Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03643 and BPUM_2171
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:10
# Commandline: needle
# -asequence dna-align/BSNT_03643___spoIIIAE.1.24716.seq
# -bsequence dna-align/BPUM_2171___spoIIIAE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03643___spoIIIAE-BPUM_2171___spoIIIAE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03643___spoIIIAE-BPUM_2171___spoIIIAE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03643___spoIIIAE
# 2: BPUM_2171___spoIIIAE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1248
# Identity: 890/1248 (71.3%)
# Similarity: 890/1248 (71.3%)
# Gaps: 102/1248 ( 8.2%)
# Score: 3037.5
#
#
#=======================================
BSNT_03643___ 1 ---------TTGA-AGCGCTTTCAATGGG--------TTTTGCTTTTGGC 32
.||| |||..||| |||| |||| |||.||||
BPUM_2171___s 1 ATGAAACGGGTGACAGCTGTTT---TGGGACTGATGCTTTT-CTTCTGGC 46
BSNT_03643___ 33 CGT----GCTGATCATAGCAGGCCGTGCAGAAATTGTACAAGCAGCTGGT 78
| |||..||| .||.| |||||||| |.|.||| |||
BPUM_2171___s 47 --TAATCGCTCCTCA-CGCGG---GTGCAGAA---GAAAAAG-AGC---- 82
BSNT_03643___ 79 AATGCAGAA--CAAACGGAAG-ACCATGCTGAAACAGCCGAGCAATTAGC 125
||..| ||| .|||| ||| |.||||.||..||.|.||
BPUM_2171___s 83 ----CATTATCCAA--TGAAGCACC-------AGCAGCAGAAGAAGTGGC 119
BSNT_03643___ 126 GGAAAGGACAGCAGCCTCGCTTGAAACAGATAAG---------ATCGGAG 166
|| ..|||||| || |||..||..|.|| ||..|.|
BPUM_2171___s 120 GG-CTGGACAG-------GC-TGATGCACTTGAGCTTCACTCCATTAGTG 160
BSNT_03643___ 167 AATTTT-GGAATGACATTAT--GACAGAATACGGCGGACTGCTGCCGGAA 213
|.|||| |||| ||..||| ||| ||.||.|||||..|.|||||.|||
BPUM_2171___s 161 ACTTTTGGGAA--ACCATATTGGAC-GAGTATGGCGGCTTTCTGCCAGAA 207
BSNT_03643___ 214 AGCCAAAAAGG--CAGCTTAATGGAGTTTATCAATGGCGATAA--ATCAT 259
||||||||||| ||| |.|.|||..|.||..|.|||||||| |.|..
BPUM_2171___s 208 AGCCAAAAAGGAACAG--TGAAGGAAATGATTGACGGCGATAAAGAGCTG 255
BSNT_03643___ 260 TCTCACCGCAAGA-ATGGCTGAAAGCTCTCTTTTC-TTATTTGTTTCATG 307
||||.|| ||| |||||||||||| ||.|.||| ||||.|||||||.|
BPUM_2171___s 256 TCTCCCC---AGACATGGCTGAAAGC-CTTTGTTCATTATCTGTTTCACG 301
BSNT_03643___ 308 AAGTGCTTGCCAACGGAAAGCTGCTGGGCACATTGATTTTGCTCACGATT 357
|.||..|.||.|||||||||||.||.||.|||.|||||||.|||||.||.
BPUM_2171___s 302 AGGTCATCGCAAACGGAAAGCTCCTTGGTACACTGATTTTACTCACCATC 351
BSNT_03643___ 358 TTTTG--CGTCATTCTGCAGCTTTTGCAAAATGCGTTTCAGCAAAGCACC 405
||.|| || .||.|||||||.|||||.|||||.|||.|.|||||||..
BPUM_2171___s 352 TTCTGTTCG--CTTTTGCAGCTATTGCAGAATGCATTTGAACAAAGCAAT 399
BSNT_03643___ 406 GTCAGTAAGGTCGCTTACTCAATTGTGTACATGGTGCTGATTATCCTTGC 455
||||||||.|||||.|||.||.||||.||.|||||||||||.||..||||
BPUM_2171___s 400 GTCAGTAAAGTCGCATACGCACTTGTTTATATGGTGCTGATCATTATTGC 449
BSNT_03643___ 456 GCTTAATAGCTTTCATGTGGCAATTAACTATGCAACTGAGGCGATTCAGA 505
.||.||.||||||||||||||.|||...||||||||.||.||.|||||.|
BPUM_2171___s 450 ACTCAACAGCTTTCATGTGGCGATTTCTTATGCAACGGAAGCCATTCAAA 499
BSNT_03643___ 506 CGATGACCAGCTTTATCCTGGCGCTCATTCCGCTCCTCTTGGCGCTTTTG 555
||||||||||.|||||.||.||.||.|||||.||..|.||.||.||..|.
BPUM_2171___s 500 CGATGACCAGTTTTATTCTTGCTCTTATTCCTCTGTTATTAGCACTGATT 549
BSNT_03643___ 556 GCTTCCTCAGGCGGAGC-TGTATCTGCTGCCTTCTTTCATCCTGTTATCC 604
|||||.|||||||| || |||.||.||.|..|||||||||||.||||||.
BPUM_2171___s 550 GCTTCATCAGGCGG-GCTTGTCTCAGCCGGATTCTTTCATCCCGTTATCT 598
BSNT_03643___ 605 TCTTCCTGATGAACACGAGCGGTCTCTTGATTCAGAATATCGTCATGCCG 654
|.||..|||||||.||||||||..|.||.|||||..||.||||..|.|||
BPUM_2171___s 599 TATTTTTGATGAATACGAGCGGCGTTTTTATTCAATATGTCGTTCTTCCG 648
BSNT_03643___ 655 CTGATTTTTTTATCAGCGATTCTGAGCATTGTCAGCACGATGACTGAACA 704
||.|||||||||||||||||..|||||||||||||.|||.||||.|||||
BPUM_2171___s 649 CTTATTTTTTTATCAGCGATATTGAGCATTGTCAGTACGCTGACCGAACA 698
BSNT_03643___ 705 ATACAAAGTAACGCAGCTGGCTAACCTGCTCAGAAATATCGCCATCGGAG 754
||||||.||.||.|||||.||..|.|||.|.||||||.|.||.||.||.|
BPUM_2171___s 699 ATACAAGGTCACCCAGCTTGCCCAGCTGTTAAGAAATGTGGCGATAGGTG 748
BSNT_03643___ 755 CGCTGGCTGTTTTTCTTACCATCTTTCTCGGCGTCATCTCTGTTCAGGGA 804
.|.|.||.||||||.|.||..|||||||.||||||||.|||||.||.||.
BPUM_2171___s 749 GGTTAGCCGTTTTTTTAACTGTCTTTCTTGGCGTCATTTCTGTGCAAGGT 798
BSNT_03643___ 805 GCCTCGGCTGCAGTGACAGACGGCATTACGCTCAGGACGGCTAAATTTAT 854
||.||.|||||.||.||.||.||.||..|.||..|.||.||.||||||||
BPUM_2171___s 799 GCATCTGCTGCGGTTACGGATGGTATCGCACTTCGTACAGCCAAATTTAT 848
BSNT_03643___ 855 AACCGGAAATTTTATTCCTGTGCTTGGCCGAATGTTTACAGACGCAACAG 904
.||||||||.|||||.||.||.||||||.|||||||||||||.||.||.|
BPUM_2171___s 849 TACCGGAAACTTTATCCCCGTCCTTGGCAGAATGTTTACAGATGCGACGG 898
BSNT_03643___ 905 ATACAGTAATCAGCGCCTCTTTACTGCTGAAAAATACGGTAGGGATTCTC 954
||||.||.|||||.||||||.|..|.||.|||||||||||.||..||.|.
BPUM_2171___s 899 ATACCGTCATCAGTGCCTCTGTCTTACTTAAAAATACGGTCGGACTTGTT 948
BSNT_03643___ 955 GGTGTCGCTATTTTGATCTGTATTGCGGCATTTCCGGCAATCAAAGTGCT 1004
||.|||||||||.|.||....|||||.||.||.||.||.|||||||||||
BPUM_2171___s 949 GGCGTCGCTATTCTCATAACAATTGCCGCTTTCCCTGCGATCAAAGTGCT 998
BSNT_03643___ 1005 TTCCCTCGCTTTTATTTATAAGCTGGCAGCCGCGATTCTTCAGCCACTAG 1054
.||..|.||..|||||||||||||.||.||.||.||.|||||||||.|||
BPUM_2171___s 999 CTCTTTAGCCCTTATTTATAAGCTTGCCGCAGCTATACTTCAGCCATTAG 1048
BSNT_03643___ 1055 GAGGCGGGCCCGTCATCACCTGCCTCGACGTC--ATCAGCAAAAGCGTCA 1102
|||||||.||..|.||||.||||||.||.||| |||| |||||.||..
BPUM_2171___s 1049 GAGGCGGTCCGATTATCAGCTGCCTAGATGTCATATCA--AAAAGTGTGC 1096
BSNT_03643___ 1103 TTTATATTTTTGCAGCTCTCGCCATTGTGTCTCTCATGTTTTTTTTAAGC 1152
|||||||.|||||.||.||.||..|.||.||.||||||||.|||||||||
BPUM_2171___s 1097 TTTATATCTTTGCTGCACTTGCTGTCGTATCGCTCATGTTCTTTTTAAGC 1146
BSNT_03643___ 1153 CTTACTGTCATAATCACAGCCGGAAACCTCACGATGATGATGAAATGA 1200
.||||.|||||.|||||.||.||.|||||.||.|||||||||||.|.|
BPUM_2171___s 1147 ATTACCGTCATTATCACTGCTGGCAACCTGACCATGATGATGAAGTAA 1194
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