Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03645 and BPUM_2172

See Amino acid alignment / Visit BSNT_03645 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:10
# Commandline: needle
#    -asequence dna-align/BSNT_03645___spoIIIAD.1.24716.seq
#    -bsequence dna-align/BPUM_2172___spoIIIAD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03645___spoIIIAD-BPUM_2172___spoIIIAD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03645___spoIIIAD-BPUM_2172___spoIIIAD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03645___spoIIIAD
# 2: BPUM_2172___spoIIIAD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 404
# Identity:     239/404 (59.2%)
# Similarity:   239/404 (59.2%)
# Gaps:          97/404 (24.0%)
# Score: 869.5
# 
#
#=======================================

BSNT_03645___      1 TTGCAGATTGACATTGTTCAAATTGTAGGTTTAGGGCTGATCGCCACCTT     50
                                                                       
BPUM_2172___s      0 --------------------------------------------------      0

BSNT_03645___     51 CCTTTCTTTAATTGTAAAAGAACAAAAGCCGACTTTTGCGTTTTTAATCG    100
                                                        .|||        |.|
BPUM_2172___s      1 -----------------------------------ATGC--------TTG      7

BSNT_03645___    101 TCGTTTTTGCCGGATGTGCCATTTTTCTTTATTTGGTAGACCAAATCTAC    150
                     |.||||||.|.||.||||..||.|||||.|||||..||||.|||||.||.
BPUM_2172___s      8 TTGTTTTTACAGGGTGTGTGATCTTTCTCTATTTAATAGATCAAATTTAT     57

BSNT_03645___    151 GACATTAT-TCGAATGATAGAAAAAATTGCGATTAATGCAAATGTCAACA    199
                     |.|||||| ||| ||||||||||||||||||...|.|||...||||||.|
BPUM_2172___s     58 GCCATTATCTCG-ATGATAGAAAAAATTGCGGCAAGTGCCGGTGTCAATA    106

BSNT_03645___    200 TGGTCTATGTTGAAACCATTTTAAAGATTATCGGAATCGCCTATATTGCT    249
                     ||...||||||||||||||||||||.|||||.||.||.|||||||||||.
BPUM_2172___s    107 TGAAGTATGTTGAAACCATTTTAAAAATTATTGGTATTGCCTATATTGCG    156

BSNT_03645___    250 GAATTCGGGGCACAGCTCACAAAAGATGCCGGTCAAGGAGCCATCGCCTC    299
                     ||||||||.||.|||||.|||||||||||.||.|||||.|||||.||.||
BPUM_2172___s    157 GAATTCGGCGCCCAGCTGACAAAAGATGCTGGACAAGGCGCCATTGCATC    206

BSNT_03645___    300 GAAAATAGA-ATTGGCGGGGAAAATTTTAATACTCGTAATGGCTGTGCCT    348
                     .|||||||| .||||| ||.||||||.|.||..|.||.|||||.||.||.
BPUM_2172___s    207 AAAAATAGAGCTTGGC-GGCAAAATTCTCATCTTGGTCATGGCAGTCCCC    255

BSNT_03645___    349 ATTTTAACCGTCATTATCGAAACGATTCTCGGACTTATACCTTCTATGTC    398
                     ||||||||.|||||.||.||.||.||..|.||..|.||.||.||.|||.|
BPUM_2172___s    256 ATTTTAACAGTCATCATTGAGACCATCTTAGGTATGATCCCGTCCATGAC    305

BSNT_03645___    399 ATAA    402
                     .|||
BPUM_2172___s    306 GTAA    309


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