Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03648 and BPUM_2175

See Amino acid alignment / Visit BSNT_03648 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:10
# Commandline: needle
#    -asequence dna-align/BSNT_03648___spoIIIAA.1.24716.seq
#    -bsequence dna-align/BPUM_2175___spoIIIAA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03648___spoIIIAA-BPUM_2175___spoIIIAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03648___spoIIIAA-BPUM_2175___spoIIIAA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03648___spoIIIAA
# 2: BPUM_2175___spoIIIAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 998
# Identity:     628/998 (62.9%)
# Similarity:   628/998 (62.9%)
# Gaps:         148/998 (14.8%)
# Score: 1793.5
# 
#
#=======================================

BSNT_03648___      1 TTGAATGAAATCGCTGAG----------GTTCTCCC-----TGATT--CC     33
                               |.||.|||          .|||||||     .||||  .|
BPUM_2175___s      1 ----------TTGCGGAGTTTGTTGGATATTCTCCCGCACGCGATTGGAC     40

BSNT_03648___     34 ATGAA---AAACGCCCTTTCTGAAATACCGGAACAACAATGGCTGGAAAT     80
                     |.|||   |.||     |.||.|||     |||..|.|||||....||||
BPUM_2175___s     41 AAGAACTTAGAC-----TGCTAAAA-----GAAGCAGAATGGGATCAAAT     80

BSNT_03648___     81 CGAAGAAGTCAGAATT----CGGATCAACCGCCCTGTTGAATTGATTCGA    126
                     .||||||.|..|.|||    |||||    ||.|||.|||||||.||.|.|
BPUM_2175___s     81 AGAAGAAATTCGCATTCGCACGGAT----CGTCCTATTGAATTAATGCAA    126

BSNT_03648___    127 AGAGGACAACCTG---TTTATTTGTCCTATGCGGGCAC------GGCCGA    167
                     |||||| ||.|.|   |||.||  ||.|||     |||      || .||
BPUM_2175___s    127 AGAGGA-AAGCCGCGCTTTCTT--TCTTAT-----CACACAACAGG-AGA    167

BSNT_03648___    168 GGATG---CCCATCTGATCCTGAGCCGGCTCAGCAACTATAGTATGTATA    214
                     .||||   |.||.|| ||  |..||.||||.|||||.||.||.|||||.|
BPUM_2175___s    168 AGATGCGTCACAGCT-AT--TAGGCAGGCTGAGCAATTACAGCATGTACA    214

BSNT_03648___    215 CACTTGAAGAAGAGCTGAAGAAAGGGTATGTCACGATCAGAGGCGGCCAC    264
                     ||||||||||.|||||.|||.||||.||..||||.||...||||||.||.
BPUM_2175___s    215 CACTTGAAGAGGAGCTAAAGCAAGGCTACATCACCATTTCAGGCGGACAT    264

BSNT_03648___    265 AGAGTCGGACTGGCGGGCAGAGTCATTACG--GAAAACGGAGGTGTGAAA    312
                     .|.||.|||||.||.||||..||.||  ||  |||.||||...|||.|||
BPUM_2175___s    265 CGGGTAGGACTTGCAGGCAAGGTGAT--CGTTGAACACGGCATTGTTAAA    312

BSNT_03648___    313 GGCCTCCGTGACATCGCATCTTTTAATATACGAATTGCCCGGCAAAAG--    360
                     ||..|..|.||.|||.|.||.||||||||.||.||     .|||||||  
BPUM_2175___s    313 GGATTGAGAGATATCTCTTCATTTAATATCCGCAT-----CGCAAAAGAA    357

BSNT_03648___    361 ---CTGGGGATTGCGGAGCCGCTGCTTCCATACTTATATCA-AAACAGCT    406
                        .|.|||||||||...||..|.|||||.||.||||||.| .|.|| ||
BPUM_2175___s    358 AAAGTCGGGATTGCGCTCCCCTTTCTTCCCTATTTATATGACGAGCA-CT    406

BSNT_03648___    407 GGCTG-AATACGCTGATTATCGGACCGCCCCAAACCGGCAAAACAACACT    455
                     || || |||||.|||||.|||||.||.||.|||||.||.|||||.|||.|
BPUM_2175___s    407 GG-TGCAATACACTGATCATCGGTCCACCGCAAACAGGGAAAACGACATT    455

BSNT_03648___    456 TCTCCGGGACCTTGCGAGGCTCTCAAGCACCGGCAAAAAAAACATGCTGC    505
                     ..|.|||||..|.||.||.||..|.||.||.||.|.||||..|||.|..|
BPUM_2175___s    456 ATTGCGGGATATAGCAAGACTTGCTAGTACGGGTACAAAAGCCATTCCTC    505

BSNT_03648___    506 CCGTAAAGACAGGGATCGTCGATGAACGGTCAGAGATTGCCGGATGTCTT    555
                     |...|||.|||||.||..|.|||||.||.|||||.||.||.||.||..|.
BPUM_2175___s    506 CTAAAAAAACAGGCATTATAGATGAGCGTTCAGAAATCGCTGGGTGCATA    555

BSNT_03648___    556 CGCGGTATTCCGCAGCATCAATTTGGTCAGAGAATTGACGTGTTAGACGC    605
                     .|.||..|.||||||||.||.|||||.||..|..|.||.|||.|.||.||
BPUM_2175___s    556 AGAGGGGTGCCGCAGCACCAGTTTGGACACCGGGTGGATGTGCTCGATGC    605

BSNT_03648___    606 CTGTCCAAAAGCTGAAGGGC-TGATGATGATGATTCGATCCATGAGCCCT    654
                     .||||||||||||| ||||| ||||||||||||||||.||.|||||.||.
BPUM_2175___s    606 ATGTCCAAAAGCTG-AGGGCTTGATGATGATGATTCGGTCTATGAGTCCA    654

BSNT_03648___    655 GAGGTGATGATTGTCGATGAAATCGG-----GCGTATGGAAGATACAGAT    699
                     |||||.||||||||||||||.|||||     |||  .|||.| |.|||  
BPUM_2175___s    655 GAGGTCATGATTGTCGATGAGATCGGAAAAAGCG--AGGATG-TGCAG--    699

BSNT_03648___    700 GCACTTCTGGAGGCGCTGCATGCCGGTGTTTCAG--TAATCGTATCGGCG    747
                     ||||||.|.||.|||.|.|||||.||.|  ||||  |.|||||.||.|..
BPUM_2175___s    700 GCACTTTTAGAAGCGATTCATGCTGGGG--TCAGCATTATCGTTTCCGTT    747

BSNT_03648___    748 CATGGCTGGAGTATATCCGAC---CT----GATG-----AAGCGGCCTTC    785
                     |||||||            ||   ||    ||||     ||.||.||.||
BPUM_2175___s    748 CATGGCT------------ACTCACTAGAAGATGTGTATAAACGTCCATC    785

BSNT_03648___    786 ATTGAAGCGTTTGTGGGAAGAAAGAGC-------CTTTGACCGCTATTTG    828
                     ||||||||..||.|||       ||||       .|||||.||.|||.|.
BPUM_2175___s    786 ATTGAAGCCGTTATGG-------GAGCTTCGCGTGTTTGAACGTTATGTT    828

BSNT_03648___    829 GAATTATCAAGAGCAA--AAGGGCCGGGCACAGTGAGCCAAATTTATGAC    876
                     ||||||  ||..|.||  |.||.||.|||||..|..|..|.||.|||||.
BPUM_2175___s    829 GAATTA--AATCGTAAGGACGGTCCCGGCACGATCGGAAAGATATATGAT    876

BSNT_03648___    877 AAAGACGGAAATGTGCTGTCTAGGACGACGGGCGTGAAAACATGCTGA    924
                     .||||||||.|.|.|.||....|||.|..|||.|||.|...|||.|.|
BPUM_2175___s    877 CAAGACGGACAAGAGATGAAATGGAGGCGGGGAGTGGACGTATGTTAA    924


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