Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03653 and BPUM_2180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:11
# Commandline: needle
# -asequence dna-align/BSNT_03653___yqhR.1.24716.seq
# -bsequence dna-align/BPUM_2180___yqhR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03653___yqhR-BPUM_2180___yqhR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03653___yqhR-BPUM_2180___yqhR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03653___yqhR
# 2: BPUM_2180___yqhR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 579
# Identity: 364/579 (62.9%)
# Similarity: 364/579 (62.9%)
# Gaps: 93/579 (16.1%)
# Score: 1030.5
#
#
#=======================================
BSNT_03653___ 1 ATGATGACTAGCGA--AAAAGATACAGAACAAAATGAAGAATTGAATGAG 48
||||...|.|| |||||| ||||..||||| |||
BPUM_2180___y 1 ---ATGAAACGTGATGAAAAGA--------AAAACCAAGAA------GAG 33
BSNT_03653___ 49 AAGCAAAAGCCGCCTGTTTCAA----------TGGCCGGCAGGGTGGCGG 88
| ||||.|.|.||| |.||| |.|..|..||.|..||.|
BPUM_2180___y 34 A---AAAATCAGTCTG-TACAAACATCATCGCTAGTTGCAAGAGCAGCTG 79
BSNT_03653___ 89 CAACAGGTTTTTGCGGAGGCGTACTTTGGAGTTT-----CGTTGCTTATA 133
|.|||||.|||...||.||.||..|||||.|.|| .|||.||.|
BPUM_2180___y 80 CGACAGGCTTTGTTGGTGGTGTTTTTTGGGGGTTTATCGGGTTTCTGA-- 127
BSNT_03653___ 134 TCGCATATTTGTTTCATTTTTCCGAAATCAGCCCGAATATGATATTGCAG 183
|.|||| ||||||||||.||.||..|.||.||.||||||.|..|.|||
BPUM_2180___y 128 -CCCATA--TGTTTCATTTCTCAGAGGTGAGTCCCAATATGCTTCTTCAG 174
BSNT_03653___ 184 CCGTTTGTACTCGGAGAGTGGAAAAAACATGGG----CTGGGAACGGTAA 229
||.|||||.||||||||||||||||| ||| ||.||.||..|.|
BPUM_2180___y 175 CCTTTTGTGCTCGGAGAGTGGAAAAA----GGGCGGACTTGGTACTTTTA 220
BSNT_03653___ 230 TCAGCATCATTTTGATT---GGAGTAATTTCAATTGGCGCAGCATTTCTT 276
|||| ||||.||.|| ||.||..|.||..||||.||.||.|||.||
BPUM_2180___y 221 TCAG---CATTGTGCTTTTAGGGGTTTTATCGGTTGGAGCTGCCTTTATT 267
BSNT_03653___ 277 TATTTTCTTCTATTGAAACGTTTAAAAACAATG-----TGGCCGGGTATT 321
||||.|...||.|||||||| ||.|||.| |||..|||..|.
BPUM_2180___y 268 TATTATGGGCTTTTGAAACG-----AATCAAAGGCTATTGGATGGGGCTA 312
BSNT_03653___ 322 TTATACGGCTTGGTGCTTTGGCTGCTCGTGTTTTTTGTTTTTAATCCGAT 371
.||||.|||..|.|..|.|||||||||||.||||..||.|||||||||||
BPUM_2180___y 313 ATATATGGCGCGATTTTATGGCTGCTCGTTTTTTACGTATTTAATCCGAT 362
BSNT_03653___ 372 TTTTCCAGATGT-GCGCACGGTGACCGA-ACTGACATCAGA-TACAATTA 418
|||.|||||||| ..||| .|.||.| |||.|||.||.| .||..||.
BPUM_2180___y 363 TTTCCCAGATGTAAAGCA---AGTCCAAGACTTACAGCAAAGCACCGTTG 409
BSNT_03653___ 419 TTACGACCATTTGC--ATTTATTTGCTTTACGGGCTGTTTGTCGGGTATT 466
|.|||||..||||| ||..|||| |.|||||..|||||||||||||..
BPUM_2180___y 410 TCACGACATTTTGCCTATACATTT--TATACGGTATGTTTGTCGGGTACA 457
BSNT_03653___ 467 CCATTTCATTTGAATACAATGAGCTGAATT--CG---GAAAAGCTTGCAC 511
..|||||.||||||||.|| |||||| || .||||||||||..
BPUM_2180___y 458 GTATTTCGTTTGAATATAA-----TGAATTAACGAGCCAAAAGCTTGCGA 502
BSNT_03653___ 512 GTGCGCT-GGGAATGCATAG--AGAATAG 537
|.||.|| ||||| |.|| ||||||.
BPUM_2180___y 503 GGGCACTCGGGAA---AAAGACAGAATAA 528
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