Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03660 and BPUM_2185

See Amino acid alignment / Visit BSNT_03660 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:11
# Commandline: needle
#    -asequence dna-align/BSNT_03660___yqhM.1.24716.seq
#    -bsequence dna-align/BPUM_2185.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03660___yqhM-BPUM_2185.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03660___yqhM-BPUM_2185.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03660___yqhM
# 2: BPUM_2185
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 850
# Identity:     635/850 (74.7%)
# Similarity:   635/850 (74.7%)
# Gaps:          26/850 ( 3.1%)
# Score: 2263.5
# 
#
#=======================================

BSNT_03660___      1 ATGCAAAAAGAAACTTGGCGGTTTATAGACTCAGGCAATGCAAG-TCCTG     49
                     |||||||||||.|..|||.|.||.||.||..||||.||| |||| .||||
BPUM_2185          1 ATGCAAAAAGAGAAATGGTGTTTCATTGATACAGGAAAT-CAAGACCCTG     49

BSNT_03660___     50 CATTCAATATGGCGCTTGATGAAGC---GCTTTTATATTGGCACAGCGAA     96
                     |.||.||.|||||..|.||||||||   ||||   ||||||||.||.||.
BPUM_2185         50 CCTTTAACATGGCAATGGATGAAGCCTTGCTT---TATTGGCATAGTGAG     96

BSNT_03660___     97 AAGAAAATCCCCCCGGTTATCCGTTTTTACGGCTGGAATCCGGCGACACT    146
                     |||...|||||.||.||||||||||||||.||.|||||||||||||||.|
BPUM_2185         97 AAGTTGATCCCGCCTGTTATCCGTTTTTATGGATGGAATCCGGCGACATT    146

BSNT_03660___    147 TTCTGTAGGGTATTTTCAAAATATTAAAAAGGAAATCAATTTTGAAGCAG    196
                     .|||||.|||||||||||..||.||.||||.||||||||..|.|||||||
BPUM_2185        147 GTCTGTTGGGTATTTTCAGCATGTTGAAAAAGAAATCAACATGGAAGCAG    196

BSNT_03660___    197 TACATAAATATAATCTCGGATTCGTCAGACGCCCGACCGGCGGGAGAGGT    246
                     |..|....|||..|||.|||||.|||.|..|.|||||.||.|||.|.||.
BPUM_2185        197 TCGAGCGCTATGGTCTTGGATTTGTCCGCAGACCGACTGGAGGGCGGGGG    246

BSNT_03660___    247 GTGCTTCACGATCAGGAACTGACATACAGCGTAATTGTTTCGGAAGAGCA    296
                     ||.|||||.||||||||.|||||.||.|||||.|||||.||.||.||.||
BPUM_2185        247 GTTCTTCATGATCAGGAGCTGACCTATAGCGTGATTGTATCAGAGGAACA    296

BSNT_03660___    297 CCCCGAGATGCCGGCGACTGTTACTGAGGCTTACCGGGTTATTTCAGAAG    346
                     .||.||.|||||.|||||.||.||.|||||.|||||.||.||||||||||
BPUM_2185        297 TCCAGAAATGCCAGCGACAGTGACAGAGGCATACCGCGTCATTTCAGAAG    346

BSNT_03660___    347 GCATACTTCAAGGCTTTAGAAATCTCGGTCTGGACGCTTACTTTGCCATC    396
                     ||||..|..||||.||||.|.|.||.||.||.||.||.||.||||||||.
BPUM_2185        347 GCATTTTAGAAGGTTTTAAAGAACTGGGACTCGATGCGTATTTTGCCATT    396

BSNT_03660___    397 CCGAGAACTGAAAAAGAAAAAGAAAGCTTAAAAAATCCGCGGTCATCTGT    446
                     ||..|.||.||.||||||||||||||||||||||||||..|.||.|||||
BPUM_2185        397 CCTCGTACAGATAAAGAAAAAGAAAGCTTAAAAAATCCAAGATCGTCTGT    446

BSNT_03660___    447 TTGTTTTGACGCGCCTTCGTGGTATGAGCTAGTGGTTGAGGGGCGCAAGG    496
                     .||.|||||.||.|||||.|||||.||.||.||.||.||.||..|.||||
BPUM_2185        447 ATGCTTTGATGCCCCTTCATGGTACGAACTTGTCGTAGAAGGTAGAAAGG    496

BSNT_03660___    497 TGGCGGGAAGCGCGCAAACGAGACAAAAAGGCGTGATTCTTCAGCATGGC    546
                     |.||.||.||.||.|||||.|||||||||||.|||||.||.|||||.|||
BPUM_2185        497 TAGCAGGCAGTGCTCAAACAAGACAAAAAGGAGTGATCCTCCAGCACGGC    546

BSNT_03660___    547 TCCATTCTT-CTTGATTTAGATGAGGACAAGCTGTTCGATCT-GTTCTTA    594
                     |||| |||| .||||..|.|||||||||||.|||||||||.| .||||| 
BPUM_2185        547 TCCA-TCTTAATTGACCTTGATGAGGACAAACTGTTCGATTTATTTCTT-    594

BSNT_03660___    595 TATCCAAGTGAAAGAGTAAGAGAGCGGATGCAGCGCAATTTCAAAAACAA    644
                     |||||||..||..|.||.|||||||||||||||.|.|..||.||||||||
BPUM_2185        595 TATCCAAACGACCGTGTGAGAGAGCGGATGCAGAGAAGCTTTAAAAACAA    644

BSNT_03660___    645 AGCGGTTGCCATTAATGAACTC----ACCGAAAAGCGGGTGACGATGGAT    690
                     ||||||.|||||.||||||.||    ||||||   |..|| ||.||.||.
BPUM_2185        645 AGCGGTCGCCATCAATGAAATCTCAGACCGAA---CTTGT-ACAATAGAC    690

BSNT_03660___    691 GAGGCTCGTAAAGCCTTTAAAGAAGGATTTGAAACAGGTCTTAACATTCA    740
                     ||.||.||....||.||||||..|||||||||||.|||..|.||.|||.|
BPUM_2185        691 GATGCGCGAGTGGCGTTTAAACGAGGATTTGAAAAAGGATTAAATATTGA    740

BSNT_03660___    741 TTTGGAGCCATATGAACTTTCTCAG--GAAGAGCTTGGTTTTGTTCATCA    788
                     ..|.|.|||.|||||.|  ||.|||  |||||..|.|..|||||.|||||
BPUM_2185        741 GCTTGTGCCTTATGAGC--TCACAGATGAAGAATTAGCATTTGTCCATCA    788

BSNT_03660___    789 -CTTGGCTGAAACAAAGTACGCTTCAGATGAATGGAATTATAAGCGGTAA    837
                      ||| ||..||||.||.||.||.|||||.||.||||||||.|||||.|||
BPUM_2185        789 TCTT-GCCAAAACGAAATATGCCTCAGACGAGTGGAATTACAAGCGTTAA    837


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03660 and BPUM_2185

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
