Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03666 and BPUM_2190

See Amino acid alignment / Visit BSNT_03666 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:12
# Commandline: needle
#    -asequence dna-align/BSNT_03666___yqhH.1.24716.seq
#    -bsequence dna-align/BPUM_2190___yqhH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03666___yqhH-BPUM_2190___yqhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03666___yqhH-BPUM_2190___yqhH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03666___yqhH
# 2: BPUM_2190___yqhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1768
# Identity:    1200/1768 (67.9%)
# Similarity:  1200/1768 (67.9%)
# Gaps:         191/1768 (10.8%)
# Score: 3864.5
# 
#
#=======================================

BSNT_03666___      1 ATGAATACAGAAATGATCTACGATGCAAAAT--GGCCTGAA--GAATTT-     45
                     .||||||...|||.|||.|..||| ||..||  |||   ||  |||||| 
BPUM_2190___y      1 TTGAATATTCAAACGATTTTTGAT-CAGGATTGGGC---AAGTGAATTTC     46

BSNT_03666___     46 ----GCTGAAAGACTGAAAAACGATGGCCCTTGGGCAAACTGGGAACTGT     91
                         ||.|..|| |.|.|    ||.|||||.|||||||||||||||.|||
BPUM_2190___y     47 AGCAGCGGCTAG-CAGCA----GACGGCCCCTGGGCAAACTGGGAAATGT     91

BSNT_03666___     92 AC-------AAGCTCTCTGCAGAAATCCAGAAAA-CATTAGCAATTCCAG    133
                     ||       .|||     ||||  |||||.|||| || .|||.|||   |
BPUM_2190___y     92 ACCGTTTAGCAGC-----GCAG--ATCCAAAAAATCA-CAGCCATT---G    130

BSNT_03666___    134 AT---TTTGAAGGCTTACGGGCTCCTTTATATCTGCCTTCCTTTACGCCG    180
                     ||   ||||||||..|.|..||||||....||||.|||.|.||.|||||.
BPUM_2190___y    131 ATTCATTTGAAGGACTGCAAGCTCCTGCCCATCTACCTGCATTCACGCCT    180

BSNT_03666___    181 CTCCCCCACCAGCTTGAAGTGGCGCA-AAAAGTGGTTGAAAAAATGAACG    229
                     .|....||.|||||||||||.|| || ||.|||.||.|||.|.|||||||
BPUM_2190___y    181 TTAAAACATCAGCTTGAAGTAGC-CAGAAGAGTCGTAGAAGAGATGAACG    229

BSNT_03666___    230 GGAAAGCGATTTTAGCAGATGAGGTTGGTCTCGGGAAAACGGTTGAAGCT    279
                     |.|||||.||||||||||||||.||.||.||.||.|||||.||.|||||.
BPUM_2190___y    230 GAAAAGCCATTTTAGCAGATGAAGTGGGACTTGGAAAAACCGTAGAAGCA    279

BSNT_03666___    280 GGACTGATTCTAAAAGAATATATGATTCGCGGGTTAGCAAAAAAAATTTT    329
                     |||||||||.|.||||||||.||||||||.||..|.||.|||||||||.|
BPUM_2190___y    280 GGACTGATTATCAAAGAATACATGATTCGTGGACTTGCCAAAAAAATTCT    329

BSNT_03666___    330 GATCCTTGTGCCCGCTTCACTTGTGTCACAGTGGGTCAAAGAGCTTCAGG    379
                     .||.||.||.|||||.||.||.||.||.||.|||||..|.|||||.| ||
BPUM_2190___y    330 CATACTCGTCCCCGCCTCTCTCGTATCTCAATGGGTACAGGAGCTGC-GG    378

BSNT_03666___    380 A-AAAATTT----TTGATTCCGGCTGTTGAACAAAAGAAAAGCTATGTGT    424
                     | |||||||    |||||    |||||.||||||||.||.|||||.||||
BPUM_2190___y    379 ACAAAATTTTACATTGAT----GCTGTCGAACAAAAAAAGAGCTACGTGT    424

BSNT_03666___    425 GGGAGCAATGCGATATTGTCGTCTCATCAATAGACACCGCGAAGCGCTCG    474
                     |||||||.||.||..|.||.||.||.||.||.||.||.||.||..|...|
BPUM_2190___y    425 GGGAGCAGTGTGACGTCGTGGTTTCCTCCATTGATACAGCCAAAAGACAG    474

BSNT_03666___    475 CCCCATCGAGAAATCGTTCTGTCTATCCCATATGATCTTGTCATTATTGA    524
                     ||.||.|||||.|...||.|.||.||..|.||.|||.|.|||||||||||
BPUM_2190___y    475 CCGCACCGAGACACTATTTTATCCATTGCCTACGATATGGTCATTATTGA    524

BSNT_03666___    525 TGAGGCACACAAACTGAAAAATAGCAAAACGAAGAACTATGAATTTGTCC    574
                     |||.|||||||||||||||||.|..||||||||.||||||||||||||..
BPUM_2190___y    525 TGAAGCACACAAACTGAAAAACAATAAAACGAAAAACTATGAATTTGTAA    574

BSNT_03666___    575 GGAATCTCGTAAAA----AAATATTGCCTGCTTCTTACCGCGACGCCAAT    620
                     |.|||||    |||    ||||.||||.||.|.||.||.||||||||.||
BPUM_2190___y    575 GAAATCT----AAATAAGAAATTTTGCTTGTTGCTGACAGCGACGCCTAT    620

BSNT_03666___    621 CCAGAACCGTATCGAAGAGATTTTCAATTTGGTGTCCTTATTAAAACCCG    670
                     |||.||||||||.|.|||.||.||.|||.|.||.|||.|..|.||.||.|
BPUM_2190___y    621 CCAAAACCGTATTGGAGAAATATTTAATCTTGTCTCCCTTCTGAAGCCAG    670

BSNT_03666___    671 GCCATTTAGGCAGTCAGAATCACTTTCAGGAGGAGTTCGCCAAGAA-GAA    719
                     |.||..||||.|.|.|..||||.|||.|.||.|..||.|||||.|| ||.
BPUM_2190___y    671 GTCACCTAGGGAATGAACATCAGTTTAAAGATGTCTTTGCCAAAAAGGAT    720

BSNT_03666___    720 ATCCAGTTTAGAAGCGCATGAACATTTAAAAGATCTTGTGAATAAAGTCA    769
                     .|.||| .||||||..|||||.|.|||||||.|.||.|||||||||||.|
BPUM_2190___y    721 TTACAG-CTAGAAGACCATGACCGTTTAAAACAGCTAGTGAATAAAGTGA    769

BSNT_03666___    770 TGATCCGTAACAGGCGGCATGATACCGGGCTGAATTGGAAACAGCGCCAT    819
                     ||||.||||||.|..|.||.||.||.||..|..|.||||.|.|.||.|||
BPUM_2190___y    770 TGATTCGTAACCGAAGACAAGACACAGGCATCGAGTGGACAAAACGGCAT    819

BSNT_03666___    820 GTTGAAAC-AGTGCCGATTGAATTTTCTCCATCAGAGCAGGCGCTTTATG    868
                     ||..|||| |.|.|| |||||.||.||||||.|.||.||.||..|.||||
BPUM_2190___y    820 GTCAAAACGATTTCC-ATTGATTTCTCTCCAACGGAACAAGCATTATATG    868

BSNT_03666___    869 ATGAAATTTCTCGTTTGAAG--GAAAG-----------TATCAATAAACC    905
                     |||||||.|.|      |||  |||||           ||| |.||||| 
BPUM_2190___y    869 ATGAAATCTGT------AAGCTGAAAGAGAACCCGTCCTAT-ACTAAAC-    910

BSNT_03666___    906 AGCCAGCATGTTCTCGATTATGACCTTGCAAAGAGAATGCTGTTCGAGCA    955
                          .||||||.||.||.|||||.|||.||.|||||||||||||.|||.
BPUM_2190___y    911 -----ACATGTTTTCCATCATGACTTTGGAACGAGAATGCTGTTCAAGCC    955

BSNT_03666___    956 GAGAAGCGGTGTATATGACGCTGAAAAAGATGCTTGATCAAAAAGAGAAA   1005
                     |.||.|||||.||||||||..|.|||||.||||   |..||.|.||.|||
BPUM_2190___y    956 GCGAGGCGGTCTATATGACAATTAAAAAAATGC---AGGAAGATGAAAAA   1002

BSNT_03666___   1006 CA---------AGCACCTGCCATTGATGAGGATACGATTTCAGTTTTAAT   1046
                     ||         |.|..||||.||.|         ||    ||..||  ||
BPUM_2190___y   1003 CATATTCTTGGATCCTCTGCAATAG---------CG----CAAATT--AT   1037

BSNT_03666___   1047 AGATCGAATTAATCAAGTGACA-CAAAACTCTAAAGCGCTTCAAGTTGTT   1095
                     .||...|||.|||.||||| || ||||||.|.||.||.|||.||||.||.
BPUM_2190___y   1038 GGAGAAAATCAATGAAGTG-CAGCAAAACACAAAGGCACTTGAAGTCGTC   1086

BSNT_03666___   1096 GATTTGATCAAAAAGATCGACGATAAGGTCATCATTTTTACAGAATACCG   1145
                     .|..|.||..|..||.|..|.||.||||||||.|||||.||.||||||||
BPUM_2190___y   1087 AAGCTTATTCAGCAGTTAAATGAAAAGGTCATTATTTTCACCGAATACCG   1136

BSNT_03666___   1146 TGCAACTCAGATTTATCTGCAGTGGTTTCTTCAGCAAAACGGCATCAGTT   1195
                     .||.||.||.||||||.|.||.|||||||||||||||||.||||||||.|
BPUM_2190___y   1137 CGCGACACAAATTTATTTACAATGGTTTCTTCAGCAAAATGGCATCAGCT   1186

BSNT_03666___   1196 CTGTGCCGTTTAGAGGCGGATTTAAACGTGGGAAAAAAGACTGGATGAAG   1245
                     |.||.||.|||.|.|||||.||||||||.||.|||||.||.||||||||.
BPUM_2190___y   1187 CCGTTCCTTTTCGTGGCGGCTTTAAACGGGGCAAAAAGGATTGGATGAAA   1236

BSNT_03666___   1246 GATCTTTTCCG----CGGAAAAATCCAAGTCCTTATTGCAACTGAAGCAG   1291
                     |||.|.||..|    |||..|    |||||..|.|||||.||.|||||||
BPUM_2190___y   1237 GATTTATTTAGAGAACGGGCA----CAAGTGTTAATTGCTACAGAAGCAG   1282

BSNT_03666___   1292 GCGGTGAGGGAATTAACCTGCAATTTTGCAATCACATGATCAACTATGAC   1341
                     ||||.||.|||||.||.||.||.|||||.|||||.||.||||||||.||.
BPUM_2190___y   1283 GCGGCGAAGGAATCAATCTTCAGTTTTGTAATCAAATCATCAACTACGAT   1332

BSNT_03666___   1342 CTGCCATGGAATCCGATGCGACTTGAGCAAAGAATCGGAAGAATTCACAG   1391
                     ||.||.|||||.||||||||.||.||.||..|.||.||..|.||.|||.|
BPUM_2190___y   1333 CTTCCGTGGAACCCGATGCGTCTAGAACAGCGGATTGGGCGTATCCACCG   1382

BSNT_03666___   1392 ACTCGGGCAGGAGCGTGACGTGCACATTTATAACATGGCAACAAAACATA   1441
                     .||.||.||.||.||.||.||.||.|||||.||||||||||||||...||
BPUM_2190___y   1383 CCTTGGACAAGAACGGGATGTCCATATTTACAACATGGCAACAAACGGTA   1432

BSNT_03666___   1442 CGGTGGAAGAGCATATTCTAAAGCTTTTATATGAAAAAATTCATTTGTTT   1491
                     |.||.||.||.||.||..||||.||||||||.|||||||||||..||||.
BPUM_2190___y   1433 CCGTTGAGGAACACATCTTAAAACTTTTATACGAAAAAATTCAACTGTTC   1482

BSNT_03666___   1492 GAAAAAGTGGTCGGCGAACTTGATGATATTTTAACGAAAAT-----TCAA   1536
                     |||||.||..|.|||||.||.|||||||||||||||..|||     ||||
BPUM_2190___y   1483 GAAAACGTCATTGGCGATCTAGATGATATTTTAACGCGAATCGATATCAA   1532

BSNT_03666___   1537 --GTG----AACAATTTTGAAGAGCACCTTCATGACATT-TTGTATCACT   1579
                       .||    |||||           |.||.|||.|.||| ||.|     |
BPUM_2190___y   1533 AGATGCCGAAACAA-----------AGCTGCATCAGATTCTTTT-----T   1566

BSNT_03666___   1580 CAGC----AACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTC   1625
                     ||||    |.||||.|..||.|||||||         |.||.|||||| |
BPUM_2190___y   1567 CAGCACGAATCAGACGGTGACATGAAAA---------AGAAATTAACC-C   1606

BSNT_03666___   1626 ATTTTTG--TCTTAT-------AA---AAAACAGCAGCCTGCT-GAAAAA   1662
                     | .||||  ||.|||       ||   ||||||.|  |||..| ||||||
BPUM_2190___y   1607 A-GTTTGCTTCCTATTTAACAGAAGCCAAAACACC--CCTTTTAGAAAAA   1653

BSNT_03666___   1663 AG------AGGATCTTAG   1674
                     ||      |||.||.||.
BPUM_2190___y   1654 AGACAGCAAGGCTCATAA   1671


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