Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03673 and BPUM_2196

See Amino acid alignment / Visit BSNT_03673 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:13
# Commandline: needle
#    -asequence dna-align/BSNT_03673___yqxM.1.24716.seq
#    -bsequence dna-align/BPUM_2196___yqxM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03673___yqxM-BPUM_2196___yqxM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03673___yqxM-BPUM_2196___yqxM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03673___yqxM
# 2: BPUM_2196___yqxM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     337/837 (40.3%)
# Similarity:   337/837 (40.3%)
# Gaps:         384/837 (45.9%)
# Score: 744.5
# 
#
#=======================================

BSNT_03673___      1 ATGTTTCGATTGTTTTACAATCAGCAAAAGGCGAAGACGAAACTGAAAGT     50
                                                         |.|||||    |||
BPUM_2196___y      1 ------------------------------------ATGAAAC----AGT     10

BSNT_03673___     51 ---TCTGCTTA-TCTTTCAGCTTTCAGTCATTTTCAGTCTGACTGCCGCA     96
                        |||...|| |||      |||..|.||||||   |.|||        
BPUM_2196___y     11 CGCTCTTTGTACTCT------TTTGTGCCATTTT---TTTGA--------     43

BSNT_03673___     97 ATATGCTTACAATTTTCCGATGAT-------ACAAGCGCTGCTTTTCATG    139
                         .||| ||..|.||...||||       ||.|.||||.|.|||.|.|
BPUM_2196___y     44 ----TCTT-CACGTCTCTCTTGATCTCAACAACGAACGCTTCGTTTAACG     88

BSNT_03673___    140 ATATTG-------AAACATTTGATGTCTCACTTCAAACGTGTAAAGACTT    182
                     ||.|||       |||| ||||     ||| |..||||.|||.||.|.||
BPUM_2196___y     89 ATGTTGAGCACTCAAAC-TTTG-----TCA-TGAAAACATGTGAAAATTT    131

BSNT_03673___    183 TCAGCATACAGATAAAAACTGCCA--TTATGATAAACGCTGGGATCAAAG    230
                     |.|.||.||||||.|..|.||.||  .|||.|.|     ||||||..|||
BPUM_2196___y    132 TGAACAAACAGATCAGCATTGTCAGCCTATCAAA-----TGGGATAGAAG    176

BSNT_03673___    231 TGATTTG---CACATATCAGATCAAAC--GGATACGAAAGGCACTGTATG    275
                     |||||||   |.|||   .||||||||  .|||  .|||||.||.||.||
BPUM_2196___y    177 TGATTTGGAACTCAT---TGATCAAACAATGAT--CAAAGGAACAGTCTG    221

BSNT_03673___    276 CTCACCTTTCGCCTTATTTGCTGTGCTCGAAAAT-ACAGGTGAGAAACTT    324
                     |.|||||             |...|||.||..|| |||          ||
BPUM_2196___y    222 CGCACCT-------------CAAAGCTTGAGCATCACA----------TT    248

BSNT_03673___    325 AAGAAAT------CAA----------------AGTGGAAGTGGGAGCTTC    352
                     ||.||||      |||                |.|||||.|||||..|.|
BPUM_2196___y    249 AAAAAATAGTGGACAACCTATTGCACACTCTGAATGGAAATGGGAATTAC    298

BSNT_03673___    353 AT-AAGCTTGAAAATGCCCGC--AAACCGTTAAAGGATGGGAACGTGATC    399
                     || |||  |||||| ||..||  ||.||||||.|.|||||..|..|..|.
BPUM_2196___y    299 ATAAAG--TGAAAA-GCGAGCAGAAGCCGTTACAAGATGGTCATATTCTT    345

BSNT_03673___    400 GAAAAAGGATTTGTCTC----CAATCAAATCGGCGATTCACTTTATAAA-    444
                     ||||||||      |||    ||.||...||    .|||||  .|.||| 
BPUM_2196___y    346 GAAAAAGG------CTCTATACAGTCCCTTC----TTTCAC--AAGAAAC    383

BSNT_03673___    445 ----ATTG-------AGACCAAGAAAAAAATGAAACCCGGCATTTATGCA    483
                         |.||       |||..||| .|||||.|||   .||.||||||.|.
BPUM_2196___y    384 AACCACTGTCACGACAGATAAAG-CAAAAACGAA---TGGAATTTATACG    429

BSNT_03673___    484 TTTAAAGTATATAAACCGGCAGGCT-------ACCCGGCAAACGGCAGTA    526
                     ||||||.|.|||.|.||...|||.|       |.|.|  ||..||     
BPUM_2196___y    430 TTTAAAATCTATTATCCTAAAGGTTTTGAAGGATCTG--AAGAGG-----    472

BSNT_03673___    527 CATTTGAGTGGTCGGAGCCTATGACGCTTGCAAAATG-CGATGAAAAACC    575
                     |||||...|||||..|.||||||..|||.|||||.|| |.| |||||   
BPUM_2196___y    473 CATTTATATGGTCTAAACCTATGCAGCTCGCAAAGTGTCCA-GAAAA---    518

BSNT_03673___    576 GACTGTCCCTAAAAAAGAAACAAAGTCGGACGTCAAAAAGGAGAATGAAA    625
                        .||..||.||                                     
BPUM_2196___y    519 ---GGTATCTTAA-------------------------------------    528

BSNT_03673___    626 CAACACAAAAGGATATACAGGAAAAAACAATGAAAGAAGAAACATCTCAA    675
                                                                       
BPUM_2196___y    528 --------------------------------------------------    528

BSNT_03673___    676 GAAGCTGTAACCAAAGAAAATGAAACTCAATCAGACCAGAAGGAAAGCGG    725
                                                                       
BPUM_2196___y    528 --------------------------------------------------    528

BSNT_03673___    726 GGAAGAGGATGAAAAAAGCAATGAAGCTGATCAGTAA    762
                                                          
BPUM_2196___y    528 -------------------------------------    528


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