Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03681 and BPUM_2201

See Amino acid alignment / Visit BSNT_03681 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:13
# Commandline: needle
#    -asequence dna-align/BSNT_03681___comGE.1.24716.seq
#    -bsequence dna-align/BPUM_2201___comGE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03681___comGE-BPUM_2201___comGE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03681___comGE-BPUM_2201___comGE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03681___comGE
# 2: BPUM_2201___comGE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 402
# Identity:     202/402 (50.2%)
# Similarity:   202/402 (50.2%)
# Gaps:         138/402 (34.3%)
# Score: 423.5
# 
#
#=======================================

BSNT_03681___      1 ATGTGGAGAGAAAATAAAGGTTTTTCTACAATAGAAACAATGTCTGCGCT     50
                     ||||..|.|..|||||.|||.|||..|||.||.|||||..|||.|||   
BPUM_2201___c      1 ATGTTCAAAAGAAATAGAGGGTTTAGTACGATTGAAACGCTGTTTGC---     47

BSNT_03681___     51 AAGTC---TGTGGCTGTTTGTGCTGCTGACAGTCGTCCCCTTGTGGGACA     97
                     ..|||   |.|..||.|||||         ||     ||.||||      
BPUM_2201___c     48 TTGTCATATTTTCCTATTTGT---------AG-----CCATTGT------     77

BSNT_03681___     98 AGCTGAT---AGCTGATGAAAAAAT--------GG----CGGAATCACGA    132
                      |||.||   |||..||||||||||        ||    .||||..|.||
BPUM_2201___c     78 -GCTCATGCCAGCCTATGAAAAAATCATGTTAGGGAAAAAGGAAGTAAGA    126

BSNT_03681___    133 G--AAATCGGCTATCAGATGATGAATGAGAGCATTAGCAAATATGTCATG    180
                     |  |||    ||             ||| ||| |||.|||||.|..||||
BPUM_2201___c    127 GCCAAA----CT-------------TGA-AGC-TTACCAAATTTTGCATG    157

BSNT_03681___    181 -AGTGGTGAAGGAGCCG---------CGT-CAAAAACGATT-----ACAA    214
                      |..|.||||.||..||         .|| |||||.|  ||     |.||
BPUM_2201___c    158 AACAGATGAATGAATCGTTCATAGATGGTACAAAATC--TTCTGTCAAAA    205

BSNT_03681___    215 AGAA------------CAATCATATCTATGCAATGAAGTGGG---AGGAG    249
                     ||||            ||  |||||.|||.||||    ||||   |.|||
BPUM_2201___c    206 AGAAGCGAGGCGACATCA--CATATGTATTCAAT----TGGGGTAAAGAG    249

BSNT_03681___    250 GAGGGCGAATATCAAAACGTATGTATCAAAGCCACAGCTT--ATAAAGAG    297
                     .||||             .|.|||||||    .|||.|||  |.|||.||
BPUM_2201___c    250 AAGGG-------------ATGTGTATCA----TACAACTTACACAAAAAG    282

BSNT_03681___    298 -AAATCATATTGCCTCAGCATCCTGCAGACAGAATGGCTATACGCTTCTT    346
                      |.|.|||| |||.|  .||||..||.|| .|||.||..|          
BPUM_2201___c    283 CAGACCATA-TGCTT--TCATCAGGCTGA-TGAACGGTGA----------    318

BSNT_03681___    347 AA    348
                       
BPUM_2201___c    318 --    318


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