Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03685 and BPUM_2204
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_03685___comGB.1.24716.seq
# -bsequence dna-align/BPUM_2204___comGB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03685___comGB-BPUM_2204___comGB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03685___comGB-BPUM_2204___comGB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03685___comGB
# 2: BPUM_2204___comGB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1144
# Identity: 632/1144 (55.2%)
# Similarity: 632/1144 (55.2%)
# Gaps: 275/1144 (24.0%)
# Score: 1453.5
#
#
#=======================================
BSNT_03685___ 0 -------------------------------------------------- 0
BPUM_2204___c 1 ATGAAGAAGCAAGCCTCTAAAGCGTGGTCTAAAAAGGATCAAGCGGAATG 50
BSNT_03685___ 1 -------------------ATGACTGCGGGC-GGATATACGCTTCTGGAT 30
.||| |.|.||| ||||||||..|..|.||.
BPUM_2204___c 51 TCTATCAAAACTTTCTCAATTGA-TTCAGGCTGGATATACATTGATTGAG 99
BSNT_03685___ 31 GGATTACGCCTGATGGAACTTCAGAT---GAATAAGAGGCAGGCGGCTGA 77
|.||||....||.||.|..|||||.| ||||||....|| ||..| |
BPUM_2204___c 100 GCATTAACAATGGTGAATATTCAGTTGTCGAATAAACAACA-GCAAC--A 146
BSNT_03685___ 78 CTTGACTGGTTCGGTCACT---TGTTTGAGGGAAGGGGCTCCGTTTTATC 124
.||.|| ..|||.||.| ||.|||...|||||||..||.||||||.
BPUM_2204___c 147 ATTAAC---ACCGGGCATTCAGTGGTTGCTCGAAGGGGAGCCTTTTTATA 193
BSNT_03685___ 125 AAGTACT--AAAGAGTTTGTC--ATTTCATAAGGAAGCCGTAGGTATTTG 170
..||.|| |||.| .|| ||||||...|||||.|.|.|..|||
BPUM_2204___c 194 TTGTGCTAGAAAAA----CTCCAATTTCAGCGGGAAGTCATCGCCATT-- 237
BSNT_03685___ 171 TTA--TTTTGCTGAAACACATGGTGAACTGCCT-GCTTC----CATGATC 213
||| |||..|.||||..||||| |.|.|| ||..| |.||| .
BPUM_2204___c 238 TTAAGTTTCTCCGAAAAGCATGG----CAGTCTAGCAACAGCACTTGA-A 282
BSNT_03685___ 214 CAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGACCAGCTGAA 263
||.||||.|..|.|..|.||...||||||...||||.|||||..|.|.||
BPUM_2204___c 283 CAAAGCGCACGGTTTTTAGAGAAAAAAATCAAACAGACAGACACGTTTAA 332
BSNT_03685___ 264 AAGTGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGT 313
|.|..||.|.||.||.|||.|||||||||||||||||||..|..||.||.
BPUM_2204___c 333 ACGCATGTTACGTTACCCGATTTTCCTCATCTTTACGGTTTCGATCGTGC 382
BSNT_03685___ 314 T--TTATATGTTACAGTCCATCATCATTCCTCAGTTTTCCGGTATCT--- 358
| ||.| |||| |||...||.|||||||||||.||||| |.|||
BPUM_2204___c 383 TCATTCT-TGTT-CAGCAAATGATCATTCCTCAATTTTC---TCTCTTGT 427
BSNT_03685___ 359 -ATCAATCGATGAATATGGAAACCTCACG-----TTCAACCGATATGCTT 402
.|| .||||||.|||....||..|||.| ||||| |.||||
BPUM_2204___c 428 ACTC-CTCGATGGATACCCGAATGTCATGGTTGATTCAA--GGTATG--- 471
BSNT_03685___ 403 TTTG--CTTTT----TTTCAGCATATTGATCTTGTGATCAT----TTTGC 442
|||| ||||| ||.|.||||.|...|||..|..|||| |.|||
BPUM_2204___c 472 TTTGGACTTTTCCAATTGCTGCATGTATCTCTCCTTCTCATCGGCTGTGC 521
BSNT_03685___ 443 TTGTTCTTTTTACAGCAGGTAT--CGGGATTTATTATTGGCTTGTGTTTA 490
.|||..|| ||.| |.||| ||.|||..|.|..|.||||
BPUM_2204___c 522 GTGTATTT----------GTCTGACTGGA--TACTATACGTTCTTTTTTA 559
BSNT_03685___ 491 AGAAAAAAT-CACC--TGCCCGGCAAATGCTGATTTGTA-TCAGGA---T 533
.|||||||| |||| || |.|.||||| ..||| ||||.| |
BPUM_2204___c 560 GGAAAAAATCCACCCTTG------AGAAGCTGA-GAGTACTCAGCAGATT 602
BSNT_03685___ 534 TCCTTTGGTT--------GGAAAGCTTGTAAAGCTGTTTAACAGCTACTT 575
|||||| || ||||.|| .|||..|..|.|..|||.|
BPUM_2204___c 603 TCCTTT--TTTATTTAAAGGAATGC------GGCTCATGCATACGTACCT 644
BSNT_03685___ 576 TTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGC----CTCTCAATT 621
|||.|||.|.|||.|||||.|.||..| |||||| .|.||.||.
BPUM_2204___c 645 TTTCTCTCTACAGTTAAGCGGACTGCT----TCAGGCTGGATTATCGATG 690
BSNT_03685___ 622 TATGACAGCCT--TAATGCATTTAAACATCAAACGTTTCT--CCCTTTCT 667
||.||.|||.| || ||.|||||.||.|||| |.|.|| ||||||||
BPUM_2204___c 691 TACGAGAGCTTGCTA--GCTTTTAAGCAGCAAA-GCTACTTACCCTTTCT 737
BSNT_03685___ 668 ACCGCTGCGAGG------CTGAACAATTGATTGAACGGCTAA-AAGCCGG 710
.| |.| |.|.|||..||||||||..|.||| ||| .||
BPUM_2204___c 738 TC-------AAGAAATATCAGTACAGATGATTGAAGAGTTAAGAAG-AGG 779
BSNT_03685___ 711 TGAG-----------TCAATTGAATCCGCTATTTGTGGAAGCCCTTTTTA 749
.||| ||||.||| || ||||.| ||.||||.
BPUM_2204___c 780 AGAGAGCATGGCATATCAAGTGA----GC-ATTTCT------CCATTTTT 818
BSNT_03685___ 750 TGAAACTGATTTATCAAAAGTCATATCTCACG-GCCAGCTG-AGCG-GCC 796
|||||...||||..||...||||| || ||..|.|| |||| ||.
BPUM_2204___c 819 TGAAAAACATTTTGCAGCTGTCAT------CGAGCATGGTGAAGCGAGCG 862
BSNT_03685___ 797 GA----TTGGATCGGGAGCTTTTCACATACAGCCAATTCATATTACAGCG 842
|| |||.| .|.||..|.|.|||.|||||||||||..|||||.|
BPUM_2204___c 863 GAATGCTTGCA-AGAGAAATGTACACGTACAGCCAATTTCTATTAGA--- 908
BSNT_03685___ 843 GCTGGAACACAAAGCGCAAAAATGGACA----GGCATC----CTTCAGCC 884
|||..||.||| .||||||.||.| ||..|| ||.|||||
BPUM_2204___c 909 ----GAATGCAGAGC-TAAAAATTGAAAAATGGGTGTCGTGGCTGCAGCC 953
BSNT_03685___ 885 AATGATTTATGGATTTGTTG-CAGCGATGATCT--TAC---TTGTGTATT 928
..|.||.|||||| .|| |.||.|| ||| ||| |||||||||
BPUM_2204___c 954 GGTTATCTATGGA----CTGACGGCAAT--TCTAATACTCATTGTGTATT 997
BSNT_03685___ 929 TATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA 972
|||||||.|||.|.||.||||||||..|||||.|.|||.|||.|
BPUM_2204___c 998 TATCTATTCTTTTACCAATGTATCAACTGATGGAGCAAGTGTAA 1041
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