Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03703 and BPUM_2211

See Amino acid alignment / Visit BSNT_03703 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:14
# Commandline: needle
#    -asequence dna-align/BSNT_03703___yqgV.1.24716.seq
#    -bsequence dna-align/BPUM_2211___yqgV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03703___yqgV-BPUM_2211___yqgV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03703___yqgV-BPUM_2211___yqgV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03703___yqgV
# 2: BPUM_2211___yqgV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 321
# Identity:     249/321 (77.6%)
# Similarity:   249/321 (77.6%)
# Gaps:          12/321 ( 3.7%)
# Score: 951.5
# 
#
#=======================================

BSNT_03703___      1 ATGGCTATCGCAGATGTAACCATTATCCCAATCGGTACGGAAACACCCAG     50
                     |||||.||.||||||||.||.||.||.|||||.|||||.||||||||.||
BPUM_2211___y      1 ATGGCCATAGCAGATGTCACGATCATTCCAATTGGTACTGAAACACCAAG     50

BSNT_03703___     51 TGTCAGTGCTTACGTAGCCGATGTGCAAAAGATATTAGAAGGATATCAAG    100
                     ||||||||||||.|||||.|||||.||||..||.||||||||.|.||||.
BPUM_2211___y     51 TGTCAGTGCTTATGTAGCAGATGTACAAAGAATTTTAGAAGGTTTTCAAA    100

BSNT_03703___    101 CAGAAGGGAAAATCAAATATCAGCTGACACCGATGAATACGCTGATCGAG    150
                     .|||||||||||||||.|||||..|.|||||.|||||||||.|.||.||.
BPUM_2211___y    101 AAGAAGGGAAAATCAATTATCAATTAACACCAATGAATACGTTAATTGAA    150

BSNT_03703___    151 GGAGAACTCAGTGACC---TTT--TTGCAGTCATTCAG-GCAATTCACGA    194
                     ||.||.||     |||   |||  |||.|||||||||| || |||||.||
BPUM_2211___y    151 GGTGAGCT-----ACCCGTTTTACTTGAAGTCATTCAGCGC-ATTCATGA    194

BSNT_03703___    195 AGCGCCATTTCAAAAAGGATTGCACAGAGTGGCAACGAATATCCGTATCG    244
                     |||.||.|||.||||.|||||||||.|.||.||.||.|||||.||.||.|
BPUM_2211___y    195 AGCACCTTTTGAAAAGGGATTGCACCGCGTAGCGACCAATATTCGCATAG    244

BSNT_03703___    245 ATGACAGGCGTGACAAAAAAACGACGCTTGAGAGCAAAATAGAAAGTGTC    294
                     ||||||||||.||..|||..||.||||||...||||||||||||||.||.
BPUM_2211___y    245 ATGACAGGCGGGATCAAACCACAACGCTTACAAGCAAAATAGAAAGCGTG    294

BSNT_03703___    295 AATAAACATTTACAGCCATAA    315
                     |||||.|||||..|.|.||||
BPUM_2211___y    295 AATAAGCATTTGAATCAATAA    315


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