Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03710 and BPUM_2215

See Amino acid alignment / Visit BSNT_03710 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:14
# Commandline: needle
#    -asequence dna-align/BSNT_03710___glcK.1.24716.seq
#    -bsequence dna-align/BPUM_2215___glcK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03710___glcK-BPUM_2215___glcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03710___glcK-BPUM_2215___glcK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03710___glcK
# 2: BPUM_2215___glcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1033
# Identity:     674/1033 (65.2%)
# Similarity:   674/1033 (65.2%)
# Gaps:         146/1033 (14.1%)
# Score: 2131.5
# 
#
#=======================================

BSNT_03710___      1 ATG-GACGAGATATGGTTTGCGGGCATTGACCTGGGAGGAACGACGATTA     49
                     ||| .|.|.||| |||||||..||..||||.||.||.||.|||||.||||
BPUM_2215___g      1 ATGATAGGGGAT-TGGTTTGTAGGGGTTGATCTTGGCGGTACGACAATTA     49

BSNT_03710___     50 AACTCGCTTTTATAAATCAATATGGCGAAATTCAGCATAAGTGGGAAGTT     99
                     |.||.||.||.||.||||.||||||.||||||||||||||||||||..||
BPUM_2215___g     50 AGCTTGCGTTCATTAATCTATATGGTGAAATTCAGCATAAGTGGGAGATT     99

BSNT_03710___    100 CCGACTGATAAAACCGGCGACACGATTACTGTCACAATTGCAAAAACAAT    149
                     ||.||.||||||.|.||..|.|||||.||.|||...|||||.|||.||||
BPUM_2215___g    100 CCTACGGATAAATCAGGGCAGACGATCACAGTCGATATTGCCAAATCAAT    149

BSNT_03710___    150 CGACAGCAAGCTGG-----ATGAG-CTGCAAAAACCGAAGCACATCATCA    193
                     .|||..|||..|||     ||.|| .|||..|||.|  ||||| |.||  
BPUM_2215___g    150 AGACCACAAATTGGTCGAAATCAGTATGCCCAAATC--AGCAC-TGAT--    194

BSNT_03710___    194 AAT-ACATCGGAATGGGTGCGCCAGGCCCTGTAGATA-------TGGCGG    235
                       | ..||.|||||||||||.||.||.||||||||||       ||    
BPUM_2215___g    195 --TGGGATTGGAATGGGTGCACCTGGGCCTGTAGATAAAGTATCTG----    238

BSNT_03710___    236 CAGGAGTTGTTTATGAAACAGTAAATCTAGGGTGGAAAAATTATGCTTTA    285
                       ||| ||||.|||.|||||...||||||||.||||.|||.|||.|..|.
BPUM_2215___g    239 --GGA-TTGTCTATAAAACAACGAATCTAGGCTGGACAAACTATCCACTC    285

BSNT_03710___    286 AAAAACCATCTGGAGACAGAAACCGGCATCCCAGCTGTTATAGAAAATGA    335
                     |||.|.||.||.|||.||||.||.||..|.|||.||||.||.||||||||
BPUM_2215___g    286 AAAGATCACCTAGAGGCAGAGACAGGACTTCCATCTGTCATCGAAAATGA    335

BSNT_03710___    336 CGCGAATATTGCTGCGCTCGGGGAAATGTGGAAGGGAGCGGGTGATGGCG    385
                     .||||||||||||||.|||||.||||||||||||||.||.||.|||||.|
BPUM_2215___g    336 TGCGAATATTGCTGCACTCGGTGAAATGTGGAAGGGTGCAGGCGATGGGG    385

BSNT_03710___    386 CAAAAGACGTCATTCTCGTGACGCTTGGCACAGGAGTTGGCGGCGGCATC    435
                     |||||.|..||.|..|.||.||.|||||.|||||.||||||||||||||.
BPUM_2215___g    386 CAAAAAATATCCTGATGGTCACACTTGGTACAGGTGTTGGCGGCGGCATT    435

BSNT_03710___    436 ATTGCAAATGGTGAAATTGTACATGGCATAAATGGCGCCGGCGGAGAAAT    485
                     ||||.||||||||||.||||.||.||...||..||.||.|||||||||||
BPUM_2215___g    436 ATTGTAAATGGTGAAGTTGTTCAAGGTGAAACAGGGGCTGGCGGAGAAAT    485

BSNT_03710___    486 CGGCCATATT--TGCAG---CATCCCTGAAGGCGGAGCGCCCTGCAACTG    530
                     .|||||||||  |||.|   |||.||  ||   |||||.||.||.|||||
BPUM_2215___g    486 TGGCCATATTTGTGCCGTTCCATTCC--AA---GGAGCACCGTGTAACTG    530

BSNT_03710___    531 CGGAAAAACGGGCTGTATCGAAACAATTGCGTCAGCAACCGGAATTGTAA    580
                     |||||.||||||||||||.|||||.|||||.||.||.||.||.||.||..
BPUM_2215___g    531 CGGAAGAACGGGCTGTATTGAAACGATTGCATCTGCGACTGGCATCGTCC    580

BSNT_03710___    581 GAATTGCAAAAGAAAAAATAGCAAATGTTAAAAAGATGACACGTTTAAAA    630
                     |..|||||||.||..||.|||               |.|||    .|..|
BPUM_2215___g    581 GGCTTGCAAAGGATCAATTAG---------------TCACA----GAGCA    611

BSNT_03710___    631 GCA-ACC----------GAACA--------ATTGTCAGCGCGGGATGTGT    661
                     ||| |||          |.|||        |.||.|.||...||||||||
BPUM_2215___g    612 GCATACCTCTTCACTTGGTACAGTCACGTCACTGACTGCAAAGGATGTGT    661

BSNT_03710___    662 TTGAAGCGGCGGGTGAAAAT---GATGAAATTGCCCTTGAG-GTGGTTGA    707
                     ||.|   |||.|.|||||.|   |||||..||| ||.||.| ||.||.||
BPUM_2215___g    662 TTCA---GGCAGCTGAAAGTGGAGATGACCTTG-CCATGCGTGTCGTAGA    707

BSNT_03710___    708 TTATGTAGCCAAGCATCTTGGTTTGGTGCTCGGAAATTTGGCAAGCTCGC    757
                     ..|.||..|.|..|||||||||.|.||..|.|..|||.|.||.||..||.
BPUM_2215___g    708 AGAAGTGACGACTCATCTTGGTCTAGTCTTAGCGAATCTTGCCAGTGCGT    757

BSNT_03710___    758 TTAATCCGTCCAAAATCGTTCTTGGCGGCGGCGTATCGAGAGCCGGAGAA    807
                     |.||.||..|.|||||.||..||||||||||.||.||.|.|||.||.||.
BPUM_2215___g    758 TAAACCCAACAAAAATTGTGATTGGCGGCGGTGTTTCAAAAGCAGGTGAG    807

BSNT_03710___    808 CTGCTGAGATC----AAAAGTCGAGA--------AAACATTCCGCAAATG    845
                     ||.||    ||    .|||||.||||        |||.||..||||    
BPUM_2215___g    808 CTTCT----TCGTAGTAAAGTAGAGAACGTTGTTAAATATCACGCA----    849

BSNT_03710___    846 CGCGTTTCCGCGGGCAGCCCAAGCT---GCTGAT-ATTTC--------AA    883
                         |||||||            ||   |||||| ||.||        .|
BPUM_2215___g    850 ----TTTCCGC------------CTTGCGCTGATGATGTCGAAGTTGTGA    883

BSNT_03710___    884 TCGCAGCACTTGGAAATGATGCCGGCGTTATCGGAGGCGCTTGGATCGCT    933
                     |.||..|||||||.||.|||||.||.||.||.||.||.||.|||||.||.
BPUM_2215___g    884 TTGCCTCACTTGGTAACGATGCAGGTGTCATTGGCGGTGCATGGATGGCA    933

BSNT_03710___    934 AAAAATGAATGGCTGAAACATCAAAATTGTTAA    966
                     |||||..|||||.||            |.||||
BPUM_2215___g    934 AAAAACAAATGGTTG------------TCTTAA    954


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