Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03726 and BPUM_2223

See Amino acid alignment / Visit BSNT_03726 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:15
# Commandline: needle
#    -asequence dna-align/BSNT_03726___pstBB.1.24716.seq
#    -bsequence dna-align/BPUM_2223___pstBB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03726___pstBB-BPUM_2223___pstBB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03726___pstBB-BPUM_2223___pstBB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03726___pstBB
# 2: BPUM_2223___pstBB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 824
# Identity:     566/824 (68.7%)
# Similarity:   566/824 (68.7%)
# Gaps:          73/824 ( 8.9%)
# Score: 1898.5
# 
#
#=======================================

BSNT_03726___      1 -------------ATG-AGTATTGCTACCGAAGCCGTAATGAAACAGGAA     36
                                  ||| ||||  ||.||.|||.|.|.|   |||.|.|||
BPUM_2223___p      1 GTGGATTTGATGAATGCAGTA--GCAACTGAAACAGCA---AAAAAAGAA     45

BSNT_03726___     37 GTCTATCAAGTCAATGGAATGAACTTATGGTATGGACAGCATCATGCTTT     86
                     ||.|.||..||.||||..||||||.|.||||||||||||||||||||.||
BPUM_2223___p     46 GTGTTTCGTGTGAATGATATGAACCTTTGGTATGGACAGCATCATGCATT     95

BSNT_03726___     87 AAAAAATATCAATTTGAGCATTTATGAAA--ATGAGGTTACGGCGATTAT    134
                     .||..||||..|.|| |||..||| ||.|  ||||.||.||.||||||||
BPUM_2223___p     96 GAAGCATATTGACTT-AGCGATTA-GAGAGCATGAAGTCACAGCGATTAT    143

BSNT_03726___    135 CGGTCCATCCGGATGCGGGAAATCGACCTTTATCAAGACATTGAATTTAA    184
                     |||.||.||.||.|||||.||.||.||.|||||.||.||.||.|||.|.|
BPUM_2223___p    144 CGGCCCGTCTGGCTGCGGAAAGTCAACGTTTATTAAAACGTTAAATCTTA    193

BSNT_03726___    185 TGATTCAAATGAC---GCCAAATGTAAAGCTTGCAGGTGAGCTGAACTAT    231
                     || .|||||  ||   ||||..|||.||..|..|.||.||..|||..|||
BPUM_2223___p    194 TG-GTCAAA--ACAGTGCCAGGTGTGAAAATCACTGGGGATATGATGTAT    240

BSNT_03726___    232 AATGGCAG----CAACATTTT-AAAGGATAAAGTGGACATCGTG--GATT    274
                     ||    ||    ||||||||| |||||            |||||  ||||
BPUM_2223___p    241 AA----AGATGACAACATTTTAAAAGG------------TCGTGTCGATT    274

BSNT_03726___    275 TA---------CGGAAAAATATCGGCATGGTATTCCAAAAAGGGAACCCG    315
                     ||         ||.||||||.||||.|||||.||.|||||||||||.||.
BPUM_2223___p    275 TAGTCGAGCTGCGTAAAAATGTCGGTATGGTGTTTCAAAAAGGGAATCCA    324

BSNT_03726___    316 TTTCCGCAATCTATTTTTGATAATGTGGCTTACGGACCGAGAGTCCACGG    365
                     ||.||.||.||.||.|||||||||||.|..||||||||.|||.|.||.||
BPUM_2223___p    325 TTCCCTCAGTCAATCTTTGATAATGTCGTATACGGACCAAGAATTCATGG    374

BSNT_03726___    366 CACCAAAAATAAGAAGAAGC------TTCAGGAAATTGTGGAAAAGTCAT    409
                           |..|||||..||||      |..|.|||||.|.||||||..|..
BPUM_2223___p    375 ------AGTTAAGAGCAAGCAGCAATTAAAAGAAATCGCGGAAAAAGCGC    418

BSNT_03726___    410 TAAAAGACGTGGCGTTATGGGATGAGGTGAAGGATCGATTGCATACGTCC    459
                     |...|||.||.||..||||||||||.|||||.|||||||||..|.|..||
BPUM_2223___p    419 TTCGAGATGTTGCCCTATGGGATGAAGTGAAAGATCGATTGAGTGCTCCC    468

BSNT_03726___    460 GCTCTTTCGCTGTCAGGGGGCCAGCAGCAGCGTCTTTGCATCGCCAGAGC    509
                     ||||||...||.||.||.||.|||||||||||||||||.|||||.|||||
BPUM_2223___p    469 GCTCTTGGCCTTTCTGGCGGTCAGCAGCAGCGTCTTTGTATCGCAAGAGC    518

BSNT_03726___    510 ACTTGCGACCAATCCTGATATTTTGCTGATGGATGAACCGACATCTGCAC    559
                     ..||||.||.|..||.|||||.||..|.|||||||||||.|||||.||||
BPUM_2223___p    519 CATTGCTACAAGCCCAGATATCTTATTAATGGATGAACCAACATCAGCAC    568

BSNT_03726___    560 TAGATCCAATCTCAACGAGAAAAATTGAAGAACTCATTCTAGAGCTAAAA    609
                     |.|||||..|.|||||...|||.|||||||||.|.|||.|..|..|.|||
BPUM_2223___p    569 TTGATCCTGTTTCAACATTAAAGATTGAAGAATTGATTATGAAATTGAAA    618

BSNT_03726___    610 AATAAATATACAATTGTCATTGTCACGCATAACATGCAGCAGGCAGCAAG    659
                     .|.||||||||.||||.||||||.|||||||||||||||||.||.||..|
BPUM_2223___p    619 GAGAAATATACGATTGCCATTGTGACGCATAACATGCAGCAAGCGGCTCG    668

BSNT_03726___    660 GGTTTCTGATCAAACCGCCTTTTTCTACATGGGCGAGCTTGTTGAATGCG    709
                     |||.||.||.|.|||.||.||.||||..|||||.||||||||||||..|.
BPUM_2223___p    669 GGTATCAGACCGAACGGCATTCTTCTTAATGGGGGAGCTTGTTGAAGTCA    718

BSNT_03726___    710 ACAATACGAATAAAATGTTCTCTAACCCGAAGGACCAAAGAACGCTCGAT    759
                     |..||||||||...|||||.|||.|.||.||.||.|||||||||...|||
BPUM_2223___p    719 ATGATACGAATGTGATGTTTTCTGAGCCAAACGATCAAAGAACGAATGAT    768

BSNT_03726___    760 TACATTTCAGGAAAGTTTGGATGA    783
                     ||.||.||.||....|||||||.|
BPUM_2223___p    769 TATATATCTGGTCGATTTGGATAA    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03726 and BPUM_2223

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
