Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03730 and BPUM_2226

See Amino acid alignment / Visit BSNT_03730 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:15
# Commandline: needle
#    -asequence dna-align/BSNT_03730___pstC.1.24716.seq
#    -bsequence dna-align/BPUM_2226___pstC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03730___pstC-BPUM_2226___pstC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03730___pstC-BPUM_2226___pstC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03730___pstC
# 2: BPUM_2226___pstC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 949
# Identity:     704/949 (74.2%)
# Similarity:   704/949 (74.2%)
# Gaps:          41/949 ( 4.3%)
# Score: 2560.0
# 
#
#=======================================

BSNT_03730___      1 AT------GATA-AACAATAGAGAAAATATGTCTGTGAGCGAGCGTTTAA     43
                     ||      |||| ||| |||.||||         |.||||||.||..|.|
BPUM_2226___p      1 ATGAAGCAGATAGAAC-ATACAGAA---------GCGAGCGATCGACTGA     40

BSNT_03730___     44 TCAGCTCAAGGCAAAATCGGCAATTGGATGAAGTTCGGGGAAGAATGATT     93
                     |..||||.|.|.|||||.|||||.||||||||||..|.|||||.||..|.
BPUM_2226___p     41 TTCGCTCGAAGAAAAATAGGCAAATGGATGAAGTAAGAGGAAGTATTTTG     90

BSNT_03730___     94 GTGACAGCATGTGCGCTGATT----ATGATTGCGGCATCTGTTGCAATCA    139
                     |||  ||..|.|||||  |||    ||||||||.|.|||..|.||.||||
BPUM_2226___p     91 GTG--AGATTCTGCGC--ATTCTTAATGATTGCTGTATCGATCGCCATCA    136

BSNT_03730___    140 CCATTTTCCTCGGCGTGAAGGGGCTGCAATCTTTTCTTGTAAATGGTGTA    189
                     ||||.|||||.||..|.|||||..|.||||||||..|.||||||||||||
BPUM_2226___p    137 CCATCTTCCTTGGTATTAAGGGTTTACAATCTTTCATCGTAAATGGTGTA    186

BSNT_03730___    190 AGCCCAATTGAATTCTTAACGAGCTTAAATTGGAATCCTA---CAGATAG    236
                     |||||||||||.||||||||.||..|.||||||||.||.|   ||||.| 
BPUM_2226___p    187 AGCCCAATTGAGTTCTTAACCAGTATCAATTGGAACCCAACAGCAGAAA-    235

BSNT_03730___    237 TGATCCGAAATACGGAGTGCTGCCATTTATTTTTGGCTCATTTGCAGTAA    286
                       |.|||.|.|||||.|...|.||.||||||||.||.|||.||||.||.|
BPUM_2226___p    236 --ACCCGCAGTACGGCGCATTTCCTTTTATTTTCGGATCAATTGCCGTCA    283

BSNT_03730___    287 CGATTCTTTCTGCTCTAATCGCTGCGCCGCTTGGCATTGCAGGTGCGATT    336
                     ||.|.||.||.||.||.||.||.|||||.||.|||||||||||.||.||.
BPUM_2226___p    284 CGCTCCTATCGGCACTTATTGCAGCGCCACTAGGCATTGCAGGCGCAATC    333

BSNT_03730___    337 TTTATGACAGAGATTGCCCCGAATTGGGGAAAGAAAGTGCTGCAGCCGGT    386
                     |||||||||||.|||||.||...|||||||...|||.|.||.|||||.||
BPUM_2226___p    334 TTTATGACAGAAATTGCACCTGCTTGGGGACGTAAAATCCTCCAGCCAGT    383

BSNT_03730___    387 GATTGA---GCTTTTAGTCGGTATTCCATCTGTTGTTTATGGATTCATAG    433
                     .||.||   ||||   ||.||.||||||||.||||||||.||||||||||
BPUM_2226___p    384 CATCGAATTGCTT---GTAGGGATTCCATCCGTTGTTTACGGATTCATAG    430

BSNT_03730___    434 GTCTTACAGTATTGGTGCCGTTTATCGCCCAGTTCAAATCGAGCGGAACA    483
                     |||||||||||||.|||||||||||||..||.|||||.||.|||||..||
BPUM_2226___p    431 GTCTTACAGTATTAGTGCCGTTTATCGGTCACTTCAAGTCAAGCGGGTCA    480

BSNT_03730___    484 GGGCACAGTTTATTGGCGGGAACGATTGTCCTTTCCGTCATGATTCTCCC    533
                     |||||.||..|..|.||.||||||||||||||.||..|.||||||||.||
BPUM_2226___p    481 GGGCATAGCGTGCTAGCAGGAACGATTGTCCTGTCTATTATGATTCTGCC    530

BSNT_03730___    534 GACGATCACATCGATTTCTGCTGATGCAATGGCTTCTCTTCCGAAGAGTT    583
                     .||..|.|||||.|||.|..||||||||||||.|||.||.||.||.||||
BPUM_2226___p    531 AACCGTTACATCTATTGCGACTGATGCAATGGGTTCACTACCAAAAAGTT    580

BSNT_03730___    584 TACGAGAGGGTTCTTACGCGCTTGGTGCGACAAGATGGCAGACGATCAGA    633
                     ||||.|||||.||.|||||..|.|||||.|||||||||||.|||||.|||
BPUM_2226___p    581 TACGTGAGGGATCGTACGCATTAGGTGCAACAAGATGGCAAACGATTAGA    630

BSNT_03730___    634 AAAGTACTTGTGCCTGCAGCTTTTCCAACATTGATGACAGCTGTTGTGTT    683
                     ...||.|||||.||.||||||.|.||||||||.||||||||.||.||..|
BPUM_2226___p    631 CGTGTGCTTGTACCAGCAGCTCTGCCAACATTAATGACAGCGGTCGTTCT    680

BSNT_03730___    684 AGGCATGGCTCGGGCGTTCGGTGAAGCTTTGGCTGTTCAGATGGTCATTG    733
                     .|||||||||.|.||.|||||.|||||..|.|||||.|||||||||||||
BPUM_2226___p    681 TGGCATGGCTAGAGCATTCGGCGAAGCCCTTGCTGTACAGATGGTCATTG    730

BSNT_03730___    734 GAAATACAAGAGTA--TTGCCGGAAAGCCTGTTTGACACTGCGGGAACGC    781
                     |||  |||.|.|||  ||.||.||.|||.|..|.||.||.||.||.||..
BPUM_2226___p    731 GAA--ACACGCGTAATTTACCAGAGAGCATTATGGATACAGCTGGTACAT    778

BSNT_03730___    782 TGACAACGATCATCACGCTGAATATGGGCCACACCACATACGGAAGTGTT    831
                     |.|||||.||.||.|||.|.||.|||||.|||||.||.||.|||||||||
BPUM_2226___p    779 TAACAACCATTATTACGTTAAACATGGGTCACACAACGTATGGAAGTGTT    828

BSNT_03730___    832 GAAAACAATACGCTGTGGTCAATGGGGCTTGTGCTTCTGGTGATGTCATT    881
                     ||.||.|||||.||.|||||||||||||||||.|||||.||..|.|||||
BPUM_2226___p    829 GAGAATAATACACTTTGGTCAATGGGGCTTGTCCTTCTAGTTGTATCATT    878

BSNT_03730___    882 CCTGTTCATCCTGCTTATTCGCTACTTGTCATCTAGGAGGAAAGTGTAA    930
                     ..|||||||.||..||||..|.||||||||.|||||||||||..|.|||
BPUM_2226___p    879 TATGTTCATACTCATTATCAGATACTTGTCGTCTAGGAGGAAGATTTAA    927


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03730 and BPUM_2226

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
