Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03731 and BPUM_2227
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_03731___pstS.1.24716.seq
# -bsequence dna-align/BPUM_2227___pstS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03731___pstS-BPUM_2227___pstS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03731___pstS-BPUM_2227___pstS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03731___pstS
# 2: BPUM_2227___pstS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity: 702/945 (74.3%)
# Similarity: 702/945 (74.3%)
# Gaps: 69/945 ( 7.3%)
# Score: 2564.5
#
#
#=======================================
BSNT_03731___ 1 ATGAAAAAAAACAAATT---GGTGCTTA---TGCTTCTGATGGC------ 38
||||||||.|||||||| |.|||||| |.|||...||.||
BPUM_2227___p 1 ATGAAAAAGAACAAATTATGGCTGCTTACTTTCCTTACAATCGCATTGTT 50
BSNT_03731___ 39 TGCATT--------TATGATG--ATTGCAGCTGCATGCGGAAATGCAGGA 78
.||||| .|||..| |..|||||| ||.|||||.||.||..|
BPUM_2227___p 51 AGCATTCGTTACAGCATGCGGAAACAGCAGCT-CAAGCGGAGATTCAAAA 99
BSNT_03731___ 79 GAAAGTAAAAAATCGAATAGCGATTCTGCAAA-AGGAGAAGAAAAGGCAT 127
||.|||||| .||| ||.||.|||| | ||||..||||||
BPUM_2227___p 100 GACAGTAAA----GGAA-----ATGCTTCAAACA----AAGATGAGGCAT 136
BSNT_03731___ 128 CAGGTTCTTTAACCATTTCTGGTTCATCGGCAATGCAGCCACTAGTACTT 177
|||||||..|.|||||.||.||.|||||.||.||||||||..||||.|||
BPUM_2227___p 137 CAGGTTCCATTACCATCTCAGGATCATCTGCGATGCAGCCTTTAGTTCTT 186
BSNT_03731___ 178 GCAGCCGCGGAAAAATTTATGGAAGAAAACCCTGATGCTGATATACAGGT 227
||.||.||.||||||||.|||||..||.|.||..|.||.|||||.||.||
BPUM_2227___p 187 GCGGCAGCAGAAAAATTCATGGATAAACATCCAAAAGCCGATATTCAAGT 236
BSNT_03731___ 228 ACAAGCTGGCGGTTCTGGAACAGGGCTTTCTCAAGTCTCTGAAGGAGCTG 277
||||||.||||||||.||||||||||||||||||||.||.||||||.|||
BPUM_2227___p 237 ACAAGCCGGCGGTTCAGGAACAGGGCTTTCTCAAGTGTCAGAAGGATCTG 286
BSNT_03731___ 278 TTCAGATCGGGAATTCAGACGTTTTTGCAGAAGAAAAAGAAGGCATCGAT 327
|.||.||.||.||.|||||.||.||.||||||||.|||||.||.|||||.
BPUM_2227___p 287 TACAAATTGGTAACTCAGATGTATTCGCAGAAGAGAAAGACGGGATCGAC 336
BSNT_03731___ 328 GCAAAAGCGCTTGTC-GATCATCAAGTCGCTGTAGTTGGTATGGCAGCAG 376
|||||||| .||..| ||.||..||||.||.||.|||||.|||||.||||
BPUM_2227___p 337 GCAAAAGC-TTTAACAGACCACAAAGTAGCAGTTGTTGGAATGGCTGCAG 385
BSNT_03731___ 377 CTGTAAACCCTGATGCTGGTGTGAAGGATATTTCAAAAGATGAATTGAAA 426
|||||||||||||.|..|||||.||.||.||.|||||.||.|||||||||
BPUM_2227___p 386 CTGTAAACCCTGAAGTGGGTGTCAAAGACATCTCAAAGGACGAATTGAAA 435
BSNT_03731___ 427 AAAATCTTCACTGGCAAAATTAAAAACTGGAAAGAGCTCGGCGGCAAAGA 476
||||||||||||||.|||||.|||||||||||||||||.|||||.|||||
BPUM_2227___p 436 AAAATCTTCACTGGTAAAATCAAAAACTGGAAAGAGCTTGGCGGGAAAGA 485
BSNT_03731___ 477 CCAAAAGATTACACTTGTAAACCGTCCTGATTCTTCTGGCACACGTGCTA 526
||||||.||.||.|||||.|||.|.|||||.|||||.||.||.|||||.|
BPUM_2227___p 486 CCAAAAAATCACTCTTGTGAACAGACCTGACTCTTCAGGAACTCGTGCAA 535
BSNT_03731___ 527 CATTTGTGAAATATGCGCTTGACGGAGAAGAACCTGCAGAAGGCATTACT 576
||||||||||.|||||.|||||.||.|.|..||||||||||||.||.||.
BPUM_2227___p 536 CATTTGTGAAGTATGCACTTGATGGTGCAACACCTGCAGAAGGAATCACA 585
BSNT_03731___ 577 GAAGATTCCTCCAACACGGTGAAAAAAATCATTGCTGATACTCCGGGAGC 626
||||||||.||.|||||.|||||||||.|.|||||.||.||.||.||.||
BPUM_2227___p 586 GAAGATTCTTCAAACACAGTGAAAAAATTGATTGCAGAAACACCAGGTGC 635
BSNT_03731___ 627 GATTGGATATCTTGCATTCTCATATTTAACAGATGACAAAGT--AACTGC 674
|||||||||.||.||||||||.||||||||||||||||||.| .||.||
BPUM_2227___p 636 GATTGGATACCTAGCATTCTCTTATTTAACAGATGACAAAATTACACCGC 685
BSNT_03731___ 675 TCTATCTATTGACGGTGTTAAACCTGAAGCGAAA--AATGTAGCAACTGG 722
| ||.| |||||.|||||.|||||.||| |||| |||||||.||..||
BPUM_2227___p 686 T-TAGC-ATTGATGGTGTGAAACCGGAA--GAAAGCAATGTAGAAAGCGG 731
BSNT_03731___ 723 CGAGTATCCGATCTGGGCTTATCAGCATTCTTATACAAAAGGTGAAGCGA 772
..|.|||.|.||.||||||||..||||||||||||||||||||||..||.
BPUM_2227___p 732 TAAATATACAATTTGGGCTTACGAGCATTCTTATACAAAAGGTGAGCCGG 781
BSNT_03731___ 773 CAGGTTTAGCTAAAGAATTTCTT-GATTATCTAAAGAGTGAAGACATTCA 821
..|||.||||.|||.|| ||||| |||||.||.|.||||||.||..|.||
BPUM_2227___p 782 ATGGTCTAGCAAAACAA-TTCTTAGATTACCTCATGAGTGATGAAGTACA 830
BSNT_03731___ 822 AAAAAGCATTGTTACTGACCAAGGCTACATTCCGGTTACTGATATGAAAG 871
||||...||.||.|..||.|||||||||||..|.|||.||.|||||||||
BPUM_2227___p 831 AAAAGAAATCGTCAAAGATCAAGGCTACATCTCAGTTTCTAATATGAAAG 880
BSNT_03731___ 872 T-----GACACGCGATGCCAAC-GGGAAGCAAAGCTGA------- 903
| ||.||| |||| ||.||.|||| |.||
BPUM_2227___p 881 TAGAAAGAGACG------CAACAGGCAAACAAA-CAGATAAGTAA 918
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