Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03733 and BPUM_2229
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:16
# Commandline: needle
# -asequence dna-align/BSNT_03733___yqgE.1.24716.seq
# -bsequence dna-align/BPUM_2229___yqgE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03733___yqgE-BPUM_2229___yqgE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03733___yqgE-BPUM_2229___yqgE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03733___yqgE
# 2: BPUM_2229___yqgE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1350
# Identity: 919/1350 (68.1%)
# Similarity: 919/1350 (68.1%)
# Gaps: 120/1350 ( 8.9%)
# Score: 2806.5
#
#
#=======================================
BSNT_03733___ 1 ATGAGCAAACTAAAAAAAGTGATAGGCGATGTAGACGTAAACAA-AGGGT 49
|||||||.|.||||.|||.||.|.||.||..|.||.|| .|||| ||..|
BPUM_2229___y 1 ATGAGCAGATTAAAGAAAATGTTCGGGGACATGGATGT-GACAAGAGATT 49
BSNT_03733___ 50 TACTCTTTCTGCTGACCATTGGCGGGCTTTACTCGCTGGGAATTGCACTG 99
||.|..|.||.||.||.||||||||..|.||..|.||.|..|||||.||.
BPUM_2229___y 50 TAATGCTCCTCCTCACGATTGGCGGATTATATGCACTTGCCATTGCGCTT 99
BSNT_03733___ 100 TCCAATACTTTTGTTAATGTGTATCTTTGGAAGCAGTCAGGGAAATTTAT 149
||.|||||.|||||.||.||||||.|.|||||.|||||.||||||||.|.
BPUM_2229___y 100 TCTAATACGTTTGTAAACGTGTATTTATGGAAACAGTCTGGGAAATTCAC 149
BSNT_03733___ 150 TGATTTGGCGATATATAATTTATCCATTGTGACAATGCAGCCGATAACCT 199
.|||.|.|||||.||.|||.|..|.|||||.....||||||||||.||.|
BPUM_2229___y 150 CGATCTTGCGATTTACAATCTGGCTATTGTTGTGCTGCAGCCGATTACAT 199
BSNT_03733___ 200 TTTATTTGGCTGGACGGTTAGCCAAAAAAATAGACAGGGTATTCATTT-- 247
|||..||.||.||...|.|.||.||||||||||||.||| |.|||
BPUM_2229___y 200 TTTTATTCGCAGGCAAGCTCGCTAAAAAAATAGACCGGG----CGTTTGT 245
BSNT_03733___ 248 --TAAGGTTCGGCGTCATTTTTTTAGCTGCCTTTTATTTAAGTGTGCTT- 294
|..|.||||||||.||.||.||||||||.|||||.||||.||| |||
BPUM_2229___y 246 CCTTCGTTTCGGCGTTATCTTCTTAGCTGCTTTTTACTTAATTGT-CTTA 294
BSNT_03733___ 295 TTAGCCGGAGA-AACGGCGGCCAGC-CGCCTCGTGCTAATCGGCGCG-GT 341
.||||.||||| .|||..| |||| ||.||.||..||.|.|| |.| ||
BPUM_2229___y 295 ATAGCAGGAGAGCACGCAG--CAGCGCGGCTTGTTTTATTAGG-GAGTGT 341
BSNT_03733___ 342 GCTCGGAGTGGGCTATGGCTTTTATTGGCTAGCGTTTAACGTACTGACCT 391
.||.||..|.||.|||||||||||.|||||.||.|||||||||||.||||
BPUM_2229___y 342 CCTTGGGATCGGTTATGGCTTTTACTGGCTTGCTTTTAACGTACTTACCT 391
BSNT_03733___ 392 TTGAAATAACAGAGCCGGATACACGAGACTTTTTCAACGGGTTTATGGGC 441
||||.||.||.|||||.||.|||.||||.||.||.||.||.|||.|.|||
BPUM_2229___y 392 TTGAGATCACCGAGCCCGAAACAAGAGATTTCTTTAATGGATTTCTCGGC 441
BSNT_03733___ 442 ATTCTTTCTTCCTCTGCAGGAATGATCGGCCCGATTGTAGC-CGGATTCG 490
.|.||.||.||..|.||.||.||||||||.||..||.|.|| .||||| |
BPUM_2229___y 442 GTGCTGTCATCTACAGCTGGCATGATCGGTCCTCTTATTGCGGGGATT-G 490
BSNT_03733___ 491 TGATCTCAAGGC--TTGA-AAATAATACGGGTTATACAGTGATTTTCA-G 536
|.||.|| || ||.| |.||.||||.||.|||||.|||||||||| |
BPUM_2229___y 491 TCATATC---GCAATTAACAGATGATACAGGCTATACGGTGATTTTCACG 537
BSNT_03733___ 537 TCTCTCCCTCAGTTTATTTGCCCTGGCTGTCGTGATGAGCTTTTTCTTAA 586
| |.||.||...|||.|||.|.||.||.||.|||||||||||||||.|.|
BPUM_2229___y 538 T-TATCGCTTTTTTTGTTTTCACTCGCGGTTGTGATGAGCTTTTTCCTCA 586
BSNT_03733___ 587 AACGGAGAGAA------TCAAAGGGCCGTT--TTATGCTGAGCAAAGTAT 628
|||||| .|||||||...|| |.|| ..||||| ||
BPUM_2229___y 587 -----AGAGAAGGCAGTCCAAAGGGAAATTCATCAT--CAAGCAA---AT 626
BSNT_03733___ 629 TTGG--AGAGCGCCATAGCAATAT-----GAATTGGCGGAGAATCACGAA 671
.||| |||.||.||| || | |||||||||.||.||.||.|.
BPUM_2229___y 627 ATGGAAAGAACGTCAT-GC----TGACGAGAATTGGCGTAGGATTACAAC 671
BSNT_03733___ 672 TGCGCATTTTTTTC-AGGGTTTGAGAGAAGGGATTTTTGTCTTTTTAATC 720
.||.||.||||||| ||||.|| .|.|||||..|.||||||||.||||||
BPUM_2229___y 672 AGCTCACTTTTTTCAAGGGCTT-CGTGAAGGAGTCTTTGTCTTCTTAATC 720
BSNT_03733___ 721 AGTGTGTTTGTATTTATTGAGACAAACAGTGAACTTGCTCTCGGTACATT 770
|||||.|||||.|||||.|..||||||||||||||||||||.||.|||||
BPUM_2229___y 721 AGTGTCTTTGTGTTTATCGCAACAAACAGTGAACTTGCTCTTGGGACATT 770
BSNT_03733___ 771 CGGTCTTGTCAATTCAGCTGTTTCCTTCTTTGCCTACTACTTTGCATCCA 820
.|||.|.||.||.||||.||||.|.||.||.||.||.|.|||.||..|..
BPUM_2229___y 771 TGGTTTGGTGAACTCAGGTGTTGCTTTTTTCGCTTATTTCTTCGCTACGC 820
BSNT_03733___ 821 GGCTGATTAAGAAAAAGGCGAGAAAAAAATCGATTTTGCTGGGCGGACTT 870
|..||||||||||||||..|.|.||.|||.|.||..||||.|||||.||.
BPUM_2229___y 821 GTTTGATTAAGAAAAAGTGGCGTAAGAAAGCCATCATGCTTGGCGGGCTG 870
BSNT_03733___ 871 ATTTTGTATGGCGCGCTGTTTTTGAT--TCTGTTC------CATATG-AG 911
|||||.||.||.||..||||.||.|| ||| ||| |.|||| |.
BPUM_2229___y 871 ATTTTATACGGAGCCTTGTTCTTAATCGTCT-TTCACTTGTCCTATGTAT 919
BSNT_03733___ 912 CTTTTCGACAT-TATTAACGTACGGCGTTTTTATTGCCATCGGCTATCCT 960
|..||| .||| ||| .||..||.| |||||.||.||.|||||.
BPUM_2229___y 920 CACTTC-TCATGTAT--GCGGTCGCC------ATTGCGATAGGATATCCG 960
BSNT_03733___ 961 CTGTTGCTTGTGCCATATGTATCACTT-ACATATGATGTGATAGGGAACG 1009
||..|||||||.||||||||||| ||| |||||.|||||.||.||..|.|
BPUM_2229___y 961 CTTCTGCTTGTTCCATATGTATC-CTTAACATACGATGTCATCGGTCATG 1009
BSNT_03733___ 1010 CGAGGCATGCCAGAAAAGCAAGAATTGAATATATCGTGCTTAGAGAAATG 1059
|.|||.||||.||.|||||..|||||||||||||.|||.|.|||||..||
BPUM_2229___y 1010 CAAGGTATGCAAGGAAAGCCCGAATTGAATATATTGTGGTCAGAGAGCTG 1059
BSNT_03733___ 1060 TTCTTGAATGCCGGCAGAATTGTTTCCATTTTGTGCTTTCTCCTGATCAT 1109
||.||.|||||.|||.|.|||..|||.|||||||..|||||..|| || |
BPUM_2229___y 1060 TTTTTAAATGCTGGCCGTATTTGTTCTATTTTGTTGTTTCTTTTG-TC-T 1107
BSNT_03733___ 1110 GGCCCTT--CTGAAAGAGGATGTGGGAATTCCTTTGTCACT-----TGCG 1152
|.|.||| ||....||.||..|.||.||.|||...||.|| |||
BPUM_2229___y 1108 GTCACTTTACTTGGTGATGAGCTCGGGATACCTGCATCTCTCGTTGTGC- 1156
BSNT_03733___ 1153 ATATTGGGTATA---GGACATCCTTTGATTTATTACTTTGTCAAGGATAT 1199
|||| | ||||||.|..|.|||||||.||||||.||.|||||
BPUM_2229___y 1157 ---TTGG----AGCGGGACATACCCTCATTTATTTCTTTGTAAAAGATAT 1199
BSNT_03733___ 1200 CCGTTTTAAGGAGAAAGAAGGGGAAAA----TGAAACCAAGGAAGAAGAC 1245
.|.||| ||||||| |||| |||.|..||.||.|.||||
BPUM_2229___y 1200 TCATTT------GAAAGAA----AAAACTGCTGATATGAAAGAGGCAGAC 1239
BSNT_03733___ 1246 GGCCAAAAAC--GGGTAACAGAACCGACCCTGTTAAAAGGCGAGAGATAA 1293
||.|||||.| |..|..|||| |||.|||..|.||.||.||.||.|||
BPUM_2229___y 1240 GGTCAAAAGCCAGTTTCTCAGA--CGAACCTTATTAAGGGAGAAAGGTAA 1287
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