Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03738 and BPUM_2234
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:16
# Commandline: needle
# -asequence dna-align/BSNT_03738___yqfZ.1.24716.seq
# -bsequence dna-align/BPUM_2234___yqfZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03738___yqfZ-BPUM_2234___yqfZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03738___yqfZ-BPUM_2234___yqfZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03738___yqfZ
# 2: BPUM_2234___yqfZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 336
# Identity: 196/336 (58.3%)
# Similarity: 196/336 (58.3%)
# Gaps: 69/336 (20.5%)
# Score: 522.5
#
#
#=======================================
BSNT_03738___ 1 ATGAAGCGTCTCACCTTAGTATGC--AGCATTGTTTTTATACTTTTTATT 48
|||..||||.|.| ||..|.||| |.||.|.|.|||.|.||.||||||
BPUM_2234___y 1 ATGCGGCGTATTA--TTTTTTTGCTAATCAGTTTGTTTGTCCTCTTTATT 48
BSNT_03738___ 49 CTTGTTTATGACCTTAAAATTGGAACCATCCCCATT----CAGGACC--- 91
.|..|||.|||..|.||||.|||.|||||||||.|| .|||.||
BPUM_2234___y 49 ATCTTTTTTGATTTGAAAAATGGCACCATCCCCGTTGAAGAAGGTCCAGC 98
BSNT_03738___ 92 --TCCCTGTCTATGAAGCATCAGCAA---------AAACGGCTGTACAAG 130
||||| |||| |||||||||...||.
BPUM_2234___y 99 AGTCCCT---------------GCAAATGCCTTTCAAACGGCTGAGAAAA 133
BSNT_03738___ 131 AACCGGCTTATAAAACGGTGAAGGTAAAGCCGGGTGATACGGTTATGTCG 180
|| ||.|||||.|.|||.|.|||.||.|..|||||.||.||..|.||.
BPUM_2234___y 134 AA---GCATATAAGAAGGTCACGGTGAAACAAGGTGAAACCGTCGTCTCT 180
BSNT_03738___ 181 ATAGTCGGATCA-GCAGGT---TCTCCGGATGA---CATTGTAAAGGATT 223
||.|| ||| .||.|| .|.|..||||| ||||| ||||||
BPUM_2234___y 181 ATCGT----TCATACAAGTAAGCCACTTGATGAAGTCATTG---AGGATT 223
BSNT_03738___ 224 TTGAAGCACTGAATCCAAATGTGAAAGCCAATGCCATTCAAGCGGGAACA 273
|.||||..|||||||.|...||.|||||.||.|..||||..||.|| ||
BPUM_2234___y 224 TCGAAGAGCTGAATCAAGGCGTCAAAGCAAACGAAATTCGGGCAGG--CA 271
BSNT_03738___ 274 G--CGTATAAATTCCCGGTCTACCCTTAA------- 300
| |.|||||.||.|||||.|| |||
BPUM_2234___y 272 GCACATATAAGTTTCCGGTATA----TAAGAGATAA 303
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