Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03747 and BPUM_2247
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_03747___yqfR.1.24716.seq
# -bsequence dna-align/BPUM_2247___yqfR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03747___yqfR-BPUM_2247___yqfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03747___yqfR-BPUM_2247___yqfR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03747___yqfR
# 2: BPUM_2247___yqfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1394
# Identity: 973/1394 (69.8%)
# Similarity: 973/1394 (69.8%)
# Gaps: 124/1394 ( 8.9%)
# Score: 3296.0
#
#
#=======================================
BSNT_03747___ 1 ATGTGCCGCTTTAAGGAGCTGGGAAAAATGAAAGAAACGAAATTT--GA- 47
|||||.|||||.|||||| ||
BPUM_2247___y 1 ---------------------------ATGAACGAAACAAAATTTACGAC 23
BSNT_03747___ 48 ACTTTATGAATTGAAACCATTTATTATAGATGCAGTACATCGCCTTGGTT 97
| ||||||||.||..|.||||||||||||||..|.|||...||.||.|
BPUM_2247___y 24 A---TATGAATTAAAGTCTTTTATTATAGATGCTATTCATGAACTGGGCT 70
BSNT_03747___ 98 TTTACGAACCAACTGATATCCAGAAAAGGCTGATTCCTGCAGTGTTAAAA 147
||||.||.|||||||||||.||.|||||..|.||.|||||.|||||||||
BPUM_2247___y 71 TTTATGAGCCAACTGATATTCAAAAAAGAATCATCCCTGCTGTGTTAAAA 120
BSNT_03747___ 148 AAAGAAAGCGTCATCGGCCAGTCTCAGACGGGTACTGGAAAGACTCACGC 197
..|||||||||.||.||.||.||.||.||.||.||.|||||.||.|||||
BPUM_2247___y 121 GGAGAAAGCGTGATTGGTCAATCACAAACAGGAACAGGAAAAACCCACGC 170
BSNT_03747___ 198 TTATTTACTGCC-----TTTATTAAACAAAATCGATCC-TGCTAAGGATG 241
.||.|||.|||| ||.||| .|||.||||| .|| ||.||..
BPUM_2247___y 171 GTACTTATTGCCGCTGATTCATT-----CAATTGATCCAAGC-AAAGAGC 214
BSNT_03747___ 242 TCGTTCAGGTAGTCATTACGGCTCCGACAAGAGAGCTAGCCAACCAGATT 291
.|||.||.||.||.|||||.||.||.||||||||..|||||||.||.|||
BPUM_2247___y 215 ACGTACAAGTCGTGATTACTGCACCTACAAGAGAATTAGCCAATCAAATT 264
BSNT_03747___ 292 TATC-AGGAAGCGC--------TTAAAA------TCACGCAGGGTGAGGA 326
| || |.|||||.| |||||| ||.| || ||.||
BPUM_2247___y 265 T-TCAAAGAAGCCCAAACGATTTTAAAAAATGCTTCTC-CA----GAAGA 308
BSNT_03747___ 327 AGGCAGTCAGATT--CGCTCGAAATGTTTT--ATCGGAGGCACTGATAAA 372
|| ||||| .|| ||.|.||| ||.||.||.||.||.||.
BPUM_2247___y 309 AG------AGATTAAAGC----AAAGCTTTACATTGGCGGAACGGACAAG 348
BSNT_03747___ 373 CAAAAATCAATTGATAAATTGAAAATACAGCCGCATCTGGTTGTCGGTAC 422
||.|||||.|||.|.||..|.||||..|||||||||.|||||||.|||||
BPUM_2247___y 349 CAGAAATCCATTCAAAAGCTAAAAAACCAGCCGCATTTGGTTGTTGGTAC 398
BSNT_03747___ 423 ACCCGGACGGATTGCTGACTTAATCAAAGAACAGGCGTTAAGTGTTCATA 472
|||.|||||.|||||||||.|.||..|.||.||||||.|.|..|||.|.|
BPUM_2247___y 399 ACCTGGACGTATTGCTGACCTCATTCATGAGCAGGCGCTGAACGTTTACA 448
BSNT_03747___ 473 AAGCGGAATCTCTTGTTATTGATGAAGCGGATCTAATGCTGGACATGGGA 522
|||||..||||||.||.|||||||||||||||.||||||||||.||||||
BPUM_2247___y 449 AAGCGACATCTCTAGTCATTGATGAAGCGGATTTAATGCTGGATATGGGA 498
BSNT_03747___ 523 TTCCTTGCAGATGTAGATTACATCGGTTCCCGCATGCCTGAGGATCTGCA 572
||..|.|.||||||.||....||.||.||.|..|||||.||..|.||.||
BPUM_2247___y 499 TTTTTAGAAGATGTGGACCGTATTGGCTCACAAATGCCAGAACAGCTACA 548
BSNT_03747___ 573 AATGCTTGTGTTCTCAGCGACCATACCGGAAAAGCTGAAACCATTTTTGA 622
||||||||||||||||||.||.||.||.|||||.||.|||||.||..|||
BPUM_2247___y 549 AATGCTTGTGTTCTCAGCAACGATTCCAGAAAAACTAAAACCGTTCCTGA 598
BSNT_03747___ 623 AGAAATACATGGAAAATCCGAAATACGCCCATGTGGAGCCAAAACAGGTG 672
|.|||||.|||||.|||||.|||||.||||||||.||.|||||||...|.
BPUM_2247___y 599 AAAAATATATGGACAATCCAAAATATGCCCATGTTGAACCAAAACGAATT 648
BSNT_03747___ 673 ACTGCTGCGAAAATCGAGCATATCCTCATTCCTTCGAAACATCGTGACAA 722
||.||||..||.||..|||||||..|..|.||.||.|||||.||||||||
BPUM_2247___y 649 ACAGCTGAAAACATTCAGCATATTTTAGTCCCATCTAAACAACGTGACAA 698
BSNT_03747___ 723 GGACAAGCTCCTTTTTGACATCATGTCGCATCTGAATCCATACTTGGGGA 772
|...||..|.|||..|||.||..||.||.||.|..|.||.||.||.||.|
BPUM_2247___y 699 GCTAAAATTGCTTCATGAAATGGTGACGAATGTACAGCCTTATTTAGGCA 748
BSNT_03747___ 773 TTGTGTTTGCCAACACGAAAAATACGGCTGACCATATTGCCCAGTATC-T 821
|..|.||||||||.||.||||..||.|.|||..|.||.|| ||| |
BPUM_2247___y 749 TCATTTTTGCCAATACAAAAACAACCGTTGATGAAATCGC-----ATCAT 793
BSNT_03747___ 822 GACT----GGCAAAGGCATGAAAATCGGCTTGCTGCACGGCGGATTAACA 867
..|| |..|||||.|||||..|.||..||||.||||||||||||||.
BPUM_2247___y 794 TCCTACAAGAAAAAGGAATGAAGGTTGGGGTGCTACACGGCGGATTAACG 843
BSNT_03747___ 868 CCACGTGAGCGGAAAAAAGTCATGAAGCAGATCAATGATTTGGAATTCAC 917
||.||.||.||.||||||||.||||||||.||..|||||||.||.|||||
BPUM_2247___y 844 CCGCGCGAACGTAAAAAAGTGATGAAGCAAATTGATGATTTAGAGTTCAC 893
BSNT_03747___ 918 TTATGTCATTGCAACTGACCTTGCCGCAAGAGGTATTGATATTAAAGGTG 967
||||.|..|.|||.||||.|||||.||..|.||.||||||||||||||.|
BPUM_2247___y 894 TTATATTGTGGCATCTGATCTTGCAGCCCGCGGAATTGATATTAAAGGCG 943
BSNT_03747___ 968 TCAGCCATGTTATCAACTATGAGCTGCCGGATGATCTCGATTTCTATGTT 1017
||||||||||.|||||||||||.||.||...||||||.|||||.||||||
BPUM_2247___y 944 TCAGCCATGTGATCAACTATGAACTTCCATCTGATCTTGATTTTTATGTT 993
BSNT_03747___ 1018 CACCGTGTGGGCAGAACGGCTCGTGCCGGCTCATCAGGACAAGCGATGAC 1067
||||||||.||..||||.|||||.||.||.|||||.|||...||.|||||
BPUM_2247___y 994 CACCGTGTTGGTCGAACAGCTCGAGCTGGTTCATCTGGAATTGCTATGAC 1043
BSNT_03747___ 1068 CATTTATGAGCTTACTGATGAGGATGCA-TTAGTAAGACTTGAAAAAATG 1116
|||||||||||||.|||||||||||||| |.|.|.| |.|.||.||||||
BPUM_2247___y 1044 CATTTATGAGCTTGCTGATGAGGATGCACTCATTCA-AATCGAGAAAATG 1092
BSNT_03747___ 1117 GGCATCGAATTTGATTACTTAGAGC--TTGAAAAGGGCGAATGGAAAAAA 1164
|||.|.|..||||| |..||.|.| |||.|.|.|||||||||..|.|.
BPUM_2247___y 1093 GGCGTTGTGTTTGA--AAATAAAACCATTGTACATGGCGAATGGCGAGAT 1140
BSNT_03747___ 1165 GGCGATGACCGTC----AGCGCCGCAAAAAG-CGTAAAAAAACGCCGAAT 1209
|..|||||||| | ||||.| |||| |||||||||.|.||.|||
BPUM_2247___y 1141 GCAGATGACCG-CTTGAAGCGTC----AAAGACGTAAAAAAGCACCTAAT 1185
BSNT_03747___ 1210 GAAGCGGATGAAATTGCTCATCGTCTCGTGAAAAAGCCGAAGAAG--GTT 1257
|||...||.||||..||..|.|||||.||||.|||.|||| ||| ||.
BPUM_2247___y 1186 GAAATTGAAGAAAAAGCAAAGCGTCTTGTGAGAAAACCGA--AAGCCGTC 1233
BSNT_03747___ 1258 AAGCCTGGGTATAAAAAGAAAATGAGCTATGAGATGGAGAAAATCAAGAA 1307
||.|||||.||||||||||||||||....|||||||||.|||||| ||
BPUM_2247___y 1234 AAACCTGGATATAAAAAGAAAATGACACGTGAGATGGACAAAATC---AA 1280
BSNT_03747___ 1308 AAAACAGAGA----AGAAACCAATCTAAG---AAAAGAAAGTAG 1344
||.|||| || |||| |.||.||| ||..|||||||.
BPUM_2247___y 1281 AAGACAG-GAACGTAGAA---AGTCAAAGCGTAATGGAAAGTAA 1320
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