Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03771 and BPUM_2262

See Amino acid alignment / Visit BSNT_03771 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:18
# Commandline: needle
#    -asequence dna-align/BSNT_03771___era.1.24716.seq
#    -bsequence dna-align/BPUM_2262___era.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03771___era-BPUM_2262___era.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03771___era-BPUM_2262___era.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03771___era
# 2: BPUM_2262___era
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity:     719/929 (77.4%)
# Similarity:   719/929 (77.4%)
# Gaps:          46/929 ( 5.0%)
# Score: 2754.5
# 
#
#=======================================

BSNT_03771___      1 ATGACGAACGAAAGCTTTAAATCAGGATTTGTATCCATTATTGGAAGACC     50
                     |||||.|||||||||||.|||||||||||||||||.||||||||||||||
BPUM_2262___e      1 ATGACTAACGAAAGCTTCAAATCAGGATTTGTATCAATTATTGGAAGACC     50

BSNT_03771___     51 AAACGTAGGAAAATCTACATTTTTGAACAGAGTCATTGGACAAAAAATCG    100
                     |||.|||||||||||.||.|||.|.||..|.||.|||||||||||.||.|
BPUM_2262___e     51 AAATGTAGGAAAATCAACTTTTCTTAATCGTGTTATTGGACAAAAGATTG    100

BSNT_03771___    101 CGATCATGAGCGATAAGCCCCAAACGACGAGAAACAAGGTGCAAGGAGTA    150
                     |.||||||||.|||||||||||||||||..||||.||.||||||||.||.
BPUM_2262___e    101 CTATCATGAGTGATAAGCCCCAAACGACACGAAATAAAGTGCAAGGTGTC    150

BSNT_03771___    151 CTGACGACAGGCACATCACAAACCATTTTTATTGACACACCAGGGATTCA    200
                     .|.||.|||..|.|.||||||||.||.|||||.||.||||||||.|||||
BPUM_2262___e    151 TTAACAACAAACTCGTCACAAACGATCTTTATCGATACACCAGGTATTCA    200

BSNT_03771___    201 TAAACCTAAGCATAAGCTTGGGGACTTTATGATGAAAGTGGCGCAAAATA    250
                     |||||||||||||||||||||.||.|||||||||||||||||.|||||||
BPUM_2262___e    201 TAAACCTAAGCATAAGCTTGGTGATTTTATGATGAAAGTGGCTCAAAATA    250

BSNT_03771___    251 CATTAAAAGAAGTCGATTTGATCTTGTTTATGATCAATGCTGAGGAAGGC    300
                     ||.|.||.||||||||..||||||||||||||||||||||..||||||||
BPUM_2262___e    251 CACTGAAGGAAGTCGACCTGATCTTGTTTATGATCAATGCAAAGGAAGGC    300

BSNT_03771___    301 TACGGGAAGGGCGACGAATTCATCATTGA--GA---AATTGCAGACGATG    345
                     ||.||.|||||.||.||||||||||||||  ||   ||  |||.||   .
BPUM_2262___e    301 TATGGCAAGGGTGATGAATTCATCATTGAACGACTCAA--GCAAAC---A    345

BSNT_03771___    346 TCTACGCCTGTATTCTTAATCGTAAACAAAATCGATAAAATTCATCCCGA    395
                     |||||.||.|||||..||.||||.||.||||||||..|||||||.||.||
BPUM_2262___e    346 TCTACACCAGTATTTCTAGTCGTCAATAAAATCGACCAAATTCACCCAGA    395

BSNT_03771___    396 CCAATTGCTTCTGCTAATTGACGAATACCGCAAACGTTATCCTTTTAAGG    445
                     ..|..||.|.||..|||||||.||||||||||.|||||||||.|||||||
BPUM_2262___e    396 TGAGCTGTTCCTTTTAATTGATGAATACCGCACACGTTATCCATTTAAGG    445

BSNT_03771___    446 AAATTGTTCCGATTTCTGCTTTAGAAGGAAATAACATCGAAAC-CTTGCT    494
                     |||||||.||.|||||.|||.|.||||||||.|||||.||.|| |||   
BPUM_2262___e    446 AAATTGTGCCAATTTCAGCTCTTGAAGGAAACAACATTGATACGCTT---    492

BSNT_03771___    495 CGCT----CAGATTGAAGCGTATTTGCCGGAAGGGCCGCAATTCTATCCG    540
                       ||    |||.||||||..|||.|.||.||.||.||||||||.|| ||.
BPUM_2262___e    493 --CTTCAGCAGGTTGAAGGTTATCTTCCTGAGGGCCCGCAATTTTA-CCC    539

BSNT_03771___    541 AG-TGACCAGGTAACTGACCACCCTGAACGATTTATCATTTCTGAATTAA    589
                     || .||.||.|||||.|||||.||.||.||||||||.|||||||||||||
BPUM_2262___e    540 AGCAGATCAAGTAACAGACCATCCAGAGCGATTTATTATTTCTGAATTAA    589

BSNT_03771___    590 TCAGGGAAAAGGTGCTGCATTTGACGAGAGAAGAAATCCCGCACAGCATT    639
                     |..|.|||||.|||||||||||.|||||||||||.||.|||||.||||||
BPUM_2262___e    590 TTCGTGAAAAAGTGCTGCATTTAACGAGAGAAGAGATTCCGCATAGCATT    639

BSNT_03771___    640 GCGGTGGCCATCGAATCCATCAAAGGGCAG--GACAACG----GTTCTGT    683
                     ||.||.||.|||||||||||.||  |.|||  ||.||.|    |.||   
BPUM_2262___e    640 GCAGTTGCGATCGAATCCATTAA--GCCAGATGAAAATGGCAAGATC---    684

BSNT_03771___    684 GCACGTAGCGGCAACGATTGTGGTCGAGCGGGATTCCCAGAAAGGCATCG    733
                      ||.||.|||||.||.|||||.||.||.||.|||||.||.|||||.||.|
BPUM_2262___e    685 -CATGTGGCGGCGACCATTGTCGTAGAACGTGATTCGCAAAAAGGGATTG    733

BSNT_03771___    734 TGATCGGTAAAAAAGGAAGCCTTCTAAAAGAGGTTGGAAAAAGAGCG---    780
                     ||||.||.|||..|||.|||.|..|||||||.||.|||.|||.||||   
BPUM_2262___e    734 TGATTGGGAAACGAGGCAGCTTATTAAAAGAAGTGGGACAAAAAGCGCGC    783

BSNT_03771___    781 AGAGCGGATATTGAAGCACTGTTGGGCTCCCGTGTCTACCTTGAATTGTG    830
                     |||   |||||.||||||||..|.||.||....||.||.||.||..|.||
BPUM_2262___e    784 AGA---GATATCGAAGCACTTCTCGGTTCAAAAGTGTATCTGGAGCTTTG    830

BSNT_03771___    831 GGTGAAAGTGCAGAAAGACTGGCGTAATAAAATGTCC---CAGCTTCGCG    877
                     |||.||.||.|||||.||||||||||||||   ||||   ||.|||||.|
BPUM_2262___e    831 GGTAAAGGTTCAGAAGGACTGGCGTAATAA---GTCCACTCACCTTCGTG    877

BSNT_03771___    878 ATTTTGGCTTTAAAGAGGACGAATATTAA    906
                     |.||.||.||||.|||.||||||||||||
BPUM_2262___e    878 ACTTCGGATTTAGAGAAGACGAATATTAA    906


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