Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03787 and BPUM_2276
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:20
# Commandline: needle
# -asequence dna-align/BSNT_03787___yqeV.1.24716.seq
# -bsequence dna-align/BPUM_2276___miaB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03787___yqeV-BPUM_2276___miaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03787___yqeV-BPUM_2276___miaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03787___yqeV
# 2: BPUM_2276___miaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1378
# Identity: 1092/1378 (79.2%)
# Similarity: 1092/1378 (79.2%)
# Gaps: 38/1378 ( 2.8%)
# Score: 4270.0
#
#
#=======================================
BSNT_03787___ 1 ---ATGGCAACTGTTGCTTTCCATACGCTTGGCTGTAAAGTCAACCATTA 47
||||.|||.||.||.||||||||.|||||||||||.|||||.||.||
BPUM_2276___m 1 ATGATGGGAACAGTAGCGTTCCATACACTTGGCTGTAAGGTCAATCACTA 50
BSNT_03787___ 48 TGAAACAGAAGCAATCTGGCAGCTTTTCAAAGAAGCGGGCTATGAAAGAA 97
||||||||||||.|||||||||||.||.||||||||.|||||||||||||
BPUM_2276___m 51 TGAAACAGAAGCGATCTGGCAGCTGTTTAAAGAAGCAGGCTATGAAAGAA 100
BSNT_03787___ 98 GAGACTTTGAA-CAAACAGCTGATGTATATGTCATTAATACATGTACGGT 146
.|||.|..||| |||| |||.||.||||||||||||||.|||||||||||
BPUM_2276___m 101 AAGAGTACGAATCAAA-AGCAGACGTATATGTCATTAACACATGTACGGT 149
BSNT_03787___ 147 TACAAATACGGGAGATAAAAAAAGCCGCCAAGTGATCAGACGCGCCATTC 196
.||.|||||.||.||||||||||||||||||||.||.|||.|.|||||||
BPUM_2276___m 150 CACGAATACAGGCGATAAAAAAAGCCGCCAAGTCATTAGAAGAGCCATTC 199
BSNT_03787___ 197 GTCAAAATCCTGACGGTGTCATCTGTGTCACAGGCTGCTACGCGCAAACC 246
||||.||.||.||.||||||||.|||||.||||||||.||.||||||||.
BPUM_2276___m 200 GTCATAACCCGGATGGTGTCATTTGTGTAACAGGCTGTTATGCGCAAACA 249
BSNT_03787___ 247 TCACCTGCTGAGATTATGGCGATCCCCGGTGTCGACATTGTAGTTGGAAC 296
||.||.||.||.||.||||||||.||.|||||.||.|||||.||.|||||
BPUM_2276___m 250 TCTCCAGCAGAAATCATGGCGATTCCTGGTGTTGATATTGTCGTGGGAAC 299
BSNT_03787___ 297 ACAGGACCGTGAAAAAATGCTTGGCTACATTGACCAATACCG-AGAAGAA 345
|||.|||.|..|.|||.|.||.||.||||||||..|||..|| || ||||
BPUM_2276___m 300 ACAAGACAGACATAAATTACTCGGTTACATTGAAGAATTTCGCAG-AGAA 348
BSNT_03787___ 346 CGCCAGCCGATTAATGGCGTCAGCAACATCATGAAAGCAAGAGTATATGA 395
.|.||||||||||||||.||..||||.||||||||||||.|.||.|.|||
BPUM_2276___m 349 AGACAGCCGATTAATGGGGTTGGCAATATCATGAAAGCACGTGTGTTTGA 398
BSNT_03787___ 396 AGAGCTTGATGTGCCTGCTTTCACGGACCGCACAAGAGCGTCATTAAAAA 445
|||.||.|||||.|||||.||.||.|||.|.|||.|.|||||||||||||
BPUM_2276___m 399 AGAACTCGATGTTCCTGCCTTTACAGACAGAACACGTGCGTCATTAAAAA 448
BSNT_03787___ 446 TACAGGAGGGCTGCAATAATTTCTGCACATTCTGTATCATTCCGTGGGCG 495
|.||.||.|||||.||.||.|||||.||||||||.||.|||||.|||||.
BPUM_2276___m 449 TCCAAGAAGGCTGTAACAACTTCTGTACATTCTGCATTATTCCTTGGGCT 498
BSNT_03787___ 496 CGCGGCCTGCTCCGCTCCCGCGATCCTGAAGAAGTCATTAAACAAGCGCA 545
|||||.||.||.||.||.||.|||||.|||||.|||||.||.||||||||
BPUM_2276___m 499 CGCGGACTTCTTCGTTCTCGAGATCCAGAAGAGGTCATCAACCAAGCGCA 548
BSNT_03787___ 546 GCAGCTTGTTGATGCCGGATATAAGGAAATTGTTCTTACGGGTATTCATA 595
|||||||||.||||||||.|||||.||||||||..|.||.||||||||.|
BPUM_2276___m 549 GCAGCTTGTAGATGCCGGCTATAAAGAAATTGTATTAACAGGTATTCACA 598
BSNT_03787___ 596 CAGGCGGCTACGGCGAAGATATGAAAGATTACAACTTCGCGAAGCTTTTG 645
|||||||.|||||.|||||..|.||.|||||.|||||.||.||||||.||
BPUM_2276___m 599 CAGGCGGATACGGTGAAGACTTAAAGGATTATAACTTTGCAAAGCTTCTG 648
BSNT_03787___ 646 AGCGAATTAGACACCCGTGTGGAAGGCGTGAAACGGATCAGAATTTCTTC 695
|..||||||||....|||||..|.||..|.|||||.||..|.|||||.||
BPUM_2276___m 649 AAAGAATTAGATGAACGTGTCAACGGTTTAAAACGAATTCGTATTTCATC 698
BSNT_03787___ 696 CATCGAAGCCAGCCAAATCACTGACGAAGTGATCGAGGT-CTTAGACCGC 744
.||||||||.||||||||.||.||.|||||||||||.|| ||| ||.|..
BPUM_2276___m 699 TATCGAAGCAAGCCAAATTACAGATGAAGTGATCGAAGTGCTT-GATCAG 747
BSNT_03787___ 745 TCAGATAAGATAGTGAATCATCTGCATATTCCTATCCAATCCGGATCAAA 794
||||||||.||.||.|..||||||||.||.||..|.|||||.||.||.||
BPUM_2276___m 748 TCAGATAAAATTGTTAGACATCTGCACATCCCGCTTCAATCTGGCTCTAA 797
BSNT_03787___ 795 CACAGTGCTTAAACGAATGAGACGCAAATATACAATGGAATTCTTTGCAG 844
|||||||||.|||.|||||.|.||.||||||||.||||||||||||||||
BPUM_2276___m 798 CACAGTGCTGAAAAGAATGCGCCGTAAATATACGATGGAATTCTTTGCAG 847
BSNT_03787___ 845 ACCGTTTAAATAAATTGAAAAAAGCACTGCCAGG-CTTAGCTGTTACTTC 893
|.|||||||..||..|||||||||||.||||||| ||| |||||.|||||
BPUM_2276___m 848 AGCGTTTAACAAAGCTGAAAAAAGCATTGCCAGGTCTT-GCTGTCACTTC 896
BSNT_03787___ 894 TGATGTCATCGTCGGATTCCCTGGAGAAACAGAAGAAGAATTTATGGAAA 943
||||||.||.||.||.|||||||||||||||||||||||||||.||||||
BPUM_2276___m 897 TGATGTGATTGTTGGGTTCCCTGGAGAAACAGAAGAAGAATTTTTGGAAA 946
BSNT_03787___ 944 CCTATAACTTTATTAAAGAACATAAATTCTCTGAACTGCATGTTTTCCCT 993
|.||.||.|||.|.|||||.|||.||||||||||||||||.||.||||||
BPUM_2276___m 947 CATACAATTTTGTCAAAGACCATCAATTCTCTGAACTGCACGTATTCCCT 996
BSNT_03787___ 994 TACAGTAAACGTACAGGAACACCAGCTGCGCGAATGGAAGACCAAGTGGA 1043
|||||||||||||||||.||.||||||||..||||||||||.||||||||
BPUM_2276___m 997 TACAGTAAACGTACAGGTACGCCAGCTGCAAGAATGGAAGATCAAGTGGA 1046
BSNT_03787___ 1044 TGAAAACGTGAAAAACGAACGTGTGCACCGCCTGATTGCTCTTTCTGACC 1093
||||||.|||||||||||||||||.||||||.||||.|||||||||||||
BPUM_2276___m 1047 TGAAAATGTGAAAAACGAACGTGTCCACCGCTTGATCGCTCTTTCTGACC 1096
BSNT_03787___ 1094 AGCTTGCAAAAGAATACGCTTCTCAG--TATGAAAATGAAGTGCTTGAGA 1141
|||||||.||||||||.||| |||| ||||||...||.||.||.||||
BPUM_2276___m 1097 AGCTTGCGAAAGAATATGCT--TCAGCTTATGAAGGGGATGTCCTAGAGA 1144
BSNT_03787___ 1142 TTATCCCTGAGGAAGCGTTTAAGGAAACAGAAG--AAG-AAAATATGTTT 1188
||||.||.||.|||.|.||.||.|||..||||| ||| |.|||.|.|.|
BPUM_2276___m 1145 TTATTCCAGAAGAATCCTTCAAAGAACAAGAAGGAAAGCACAATCTTTAT 1194
BSNT_03787___ 1189 GTCGGTTACACAGACAATTATATGAAGGTTGTTTTCAAAGGTACGGAAGA 1238
||.||.||.|||||.||.|||||||||||||||||..||||.||.||.||
BPUM_2276___m 1195 GTGGGCTATACAGATAACTATATGAAGGTTGTTTTTGAAGGAACAGAGGA 1244
BSNT_03787___ 1239 TATGATCGGCAAAATC-----GTAAAAGTCAAAATCCTAAAAGCAGGTTA 1283
.|||||||| || ||.|||||.||||||...||.||.|||||
BPUM_2276___m 1245 CATGATCGG-----TCGTTTGGTCAAAGTGAAAATCACGAAGGCGGGTTA 1289
BSNT_03787___ 1284 TCCTTACAACGAAGGACAGTTTGTCCGTGTGGTTGAG-GATGAAAT---A 1329
||||||.|||||||||||.||.||.||| .|.|| ||||||.| |
BPUM_2276___m 1290 TCCTTATAACGAAGGACAATTCGTTCGT----ATAAGCGATGAAGTACAA 1335
BSNT_03787___ 1330 ACTGAACACA-TGCGTTTGTCTTCTTAA 1356
||.| |||.| ||.|..||.|.||.|||
BPUM_2276___m 1336 ACAG-ACAAAGTGAGAATGACCTCATAA 1362
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