Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03793 and BPUM_2281
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:20
# Commandline: needle
# -asequence dna-align/BSNT_03793.1.24716.seq
# -bsequence dna-align/BPUM_2281___grpE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03793-BPUM_2281___grpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03793-BPUM_2281___grpE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03793
# 2: BPUM_2281___grpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 561
# Identity: 267/561 (47.6%)
# Similarity: 267/561 (47.6%)
# Gaps: 219/561 (39.0%)
# Score: 994.0
#
#
#=======================================
BSNT_03793 0 -------------------------------------------------- 0
BPUM_2281___g 1 ATGTCAGAAGAAAAACAGACACCTGAGCAAGAAGCAGAGGTTGAAGCACA 50
BSNT_03793 0 -------------------------------------------------- 0
BPUM_2281___g 51 AGAAGAAGCAGTTCAAGCAGATACTGAGGAAGTAACACAGGATGAACAGT 100
BSNT_03793 0 -------------------------------------------------- 0
BPUM_2281___g 101 CTGCCTTCCAAGAGAAAATCGATGAATTGCAGCAGCTTCTAGATGAAAAA 150
BSNT_03793 0 -------------------------------------------------- 0
BPUM_2281___g 151 GAAAACAAAATTCTGCGTGTTCAAGCAGATTTTGAAAACTATAAACGCCG 200
BSNT_03793 1 -------------ATGGA-AGCGTCCCAAAAATACCGTTCTCAAAATATC 36
.|||| |.||| .||||||||.|||||||||.||.|.
BPUM_2281___g 201 TGCTCGAACTGAAGTGGAGACCGT-GCAAAAATATCGTTCTCAACATGTT 249
BSNT_03793 37 GTGACTGATTTGCTGCCGGCTCTTGATAGCTTTGAACGAGCGCTTCAGG- 85
||.|..|||.|.||.||.||||||||.|.|||||||.|||||||| ||
BPUM_2281___g 250 GTCAGCGATCTTCTCCCAGCTCTTGACAACTTTGAAAGAGCGCTT--GGA 297
BSNT_03793 86 -TTGAAGCCGACAATGAACAGACGAAAAGTTTGCTCCAGGGAATGGAAAT 134
||||..|.||||||||.|||.||||||||||..|..|.||||||.||||
BPUM_2281___g 298 ATTGATCCAGACAATGAGCAGGCGAAAAGTTTATTAGAAGGAATGCAAAT 347
BSNT_03793 135 GGTCCACCGTCAGCTCGTAGAAGCCTTGAAAAAAGAAGGCGTCGAAGCCA 184
|||..||||.|||||.||||||||.||||||||.||||||||.|||.|.|
BPUM_2281___g 348 GGTTTACCGCCAGCTGGTAGAAGCGTTGAAAAATGAAGGCGTTGAACCAA 397
BSNT_03793 185 TCGAAGCTGTAGGGCAGGAATTTGATCCTAATCTGCACCAAGCTGTTATG 234
|.||||||||.||..|.||.||.|||||.||.||.||.|||||.||.|||
BPUM_2281___g 398 TTGAAGCTGTCGGCAAAGAGTTCGATCCAAACCTTCATCAAGCCGTCATG 447
BSNT_03793 235 CAGGCTGAAGACGAAAACTACGGCTCCAACATTGTTGTTGAGGAAATGCA 284
||.|.||||||.|||||||.||..||.||.||.||.||.||.|||.||||
BPUM_2281___g 448 CAAGTTGAAGATGAAAACTTCGATTCAAATATCGTAGTAGAAGAATTGCA 497
BSNT_03793 285 AAAAGGCTATAAGCTGAAGGATCGCGTCATTCGCCCTTCCATGGTCAAAG 334
|||.||||||||.||.||.||.||.||.|||||.||.||.|||||.||||
BPUM_2281___g 498 AAAGGGCTATAAACTCAAAGACCGAGTTATTCGTCCATCAATGGTAAAAG 547
BSNT_03793 335 TGAATCAATAA 345
|.|||||||||
BPUM_2281___g 548 TAAATCAATAA 558
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