Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03795 and BPUM_2282

See Amino acid alignment / Visit BSNT_03795 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:21
# Commandline: needle
#    -asequence dna-align/BSNT_03795___hrcA.1.24716.seq
#    -bsequence dna-align/BPUM_2282___hrcA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03795___hrcA-BPUM_2282___hrcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03795___hrcA-BPUM_2282___hrcA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03795___hrcA
# 2: BPUM_2282___hrcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1070
# Identity:     766/1070 (71.6%)
# Similarity:   766/1070 (71.6%)
# Gaps:          76/1070 ( 7.1%)
# Score: 2538.0
# 
#
#=======================================

BSNT_03795___      1 ATGTTAACAAATCGTCAGCTGCTGATCCTTCAGGTTATAATCAACGATTT     50
                     ||||||||||||||||||||..||||.||.||.||.||.||.||.||.||
BPUM_2282___h      1 ATGTTAACAAATCGTCAGCTTTTGATTCTGCAAGTCATCATTAATGACTT     50

BSNT_03795___     51 TATTAAATCGGCACAGCCGGTGGGATCAAGAACTCTTTCGAAAAAAGATG    100
                     ||||...|||||.|||||.||.||.|||||.||||||||.||||||||.|
BPUM_2282___h     51 TATTCGTTCGGCGCAGCCAGTTGGGTCAAGGACTCTTTCCAAAAAAGAGG    100

BSNT_03795___    101 AAATCACATTTAGCTCTGCAACAATAAGAAACGAGATGGCTGACTTGGAG    150
                     |.||||||||.||||||||.||.||.||||||||.||||||||.||||||
BPUM_2282___h    101 ACATCACATTCAGCTCTGCGACGATTAGAAACGAAATGGCTGATTTGGAG    150

BSNT_03795___    151 GAATTGGGCTTTATTGAAAAAACCCATTCATCCTCAGGACGTGTTCCGTC    200
                     |||.|.||.|||||.|||||.||||||||.||.||||||.|..||||.||
BPUM_2282___h    151 GAACTTGGTTTTATCGAAAAGACCCATTCTTCATCAGGAAGAATTCCTTC    200

BSNT_03795___    201 AGAAAAAGGGTATCGGTACTATGTTGACCATTTGCTGTCACC-CGTCAAA    249
                     |||||||||.|||||.||.|||||.||.||||||||.||.|| || .|||
BPUM_2282___h    201 AGAAAAAGGATATCGTTATTATGTAGATCATTTGCTCTCTCCGCG-AAAA    249

BSNT_03795___    250 CTGACGAAAAGCGACCTGGACCAAATCCACTC-GATCTTCAAAGAGAAAA    298
                     |||.||...|.|||.||.|..|..|||||.|| |.|.||| |.|||||||
BPUM_2282___h    250 CTGTCGTCTAACGAGCTTGTGCTCATCCAGTCGGCTTTTC-AGGAGAAAA    298

BSNT_03795___    299 TTTTCGAGCTGGAGAAGACAGTTCAAAAATCAGCGCAAATTTTGTCCGAT    348
                     ||||.|||||.||.||.||||||||||||||.|||.|||||||.||.|||
BPUM_2282___h    299 TTTTTGAGCTTGAAAAAACAGTTCAAAAATCGGCGGAAATTTTATCAGAT    348

BSNT_03795___    349 CTGACGAATTACACATCCATCGTACTCGGGCCGAAGCTGAGTGAGAATTA    398
                     ||.||.||.||.|||||.|||||.||.||.||.|||||||||||.|||  
BPUM_2282___h    349 CTCACAAACTATACATCGATCGTGCTTGGTCCAAAGCTGAGTGAAAAT--    396

BSNT_03795___    399 CC--TTAAA-CAGATTCAAATCATTCCGATTCAGCCTGATATGGCGGTAG    445
                      |  ||||| ||.|||||..|..|.||..|||||||..|.|..||.||.|
BPUM_2282___h    397 -CGATTAAAGCAAATTCAGCTTGTCCCCGTTCAGCCAAACAAAGCAGTCG    445

BSNT_03795___    446 CGATTCTCGTTACCAATACGGGGCATGTGGAAAACAAAACGATTAACTT-    494
                     ||||..|..||||..|.|..||.|||||.|||||||||||.||||.||| 
BPUM_2282___h    446 CGATCATGATTACAGACAGCGGACATGTTGAAAACAAAACCATTACCTTC    495

BSNT_03795___    495 TCCGACCAAAATGGATCTGTCTGATATTGAAAAACTGGTAAATATACTGA    544
                     ||.||.| |..|.|||.|.||.||||||||.||.|||.|.|||||..|||
BPUM_2282___h    496 TCTGAGC-ATCTCGATGTCTCCGATATTGAGAAGCTGATGAATATTTTGA    544

BSNT_03795___    545 ACGACCGTTTAAGC-GGCGTTCCAATGGATGAACTGAATGAGCGCATATT    593
                     |...|||.|| ||| ||||||||.|||||..|..||||.||..|.||.|.
BPUM_2282___h    545 ATAGCCGCTT-AGCTGGCGTTCCGATGGACCAGTTGAAGGACAGGATGTA    593

BSNT_03795___    594 TAAAGAAGTTGTCATG----TACCTAAGACAGCACA---TTAAAA-ACTA    635
                     |||||||||.||||||    |.|        |||||   |||||| |.||
BPUM_2282___h    594 TAAAGAAGTGGTCATGCTTTTGC--------GCACACATTTAAAAGATTA    635

BSNT_03795___    636 TGACAATATACTCGACGCGCTTCGTTCAAC---CTTTCATTC--CACAAA    680
                     |||..|.||..|.||.|||||..|  ||||   .||.|| ||  ||||||
BPUM_2282___h    636 TGATCACATTTTAGATGCGCTCGG--CAACACATTTACA-TCAACACAAA    682

BSNT_03795___    681 TCACAT---TGAAAAGTTGTTTTTTGGCGGGAAAATCAATATGCTGAACC    727
                         ||   |.||||.|| ||.|||||||||||.||.||||||.||||.|
BPUM_2282___h    683 ----ATGAATCAAAACTT-TTCTTTGGCGGGAAGATTAATATGTTGAATC    727

BSNT_03795___    728 AGCCTGAGTTCCATGATATCACCCGAGTTCGGTCGCTGCTTTCAT-----    772
                     |||||||.||.|||||.|||..|||..||||.||.|     ||||     
BPUM_2282___h    728 AGCCTGAATTTCATGACATCGACCGTATTCGCTCAC-----TCATGATGC    772

BSNT_03795___    773 TAATTGAG--AAAGAACAGGATGTTTTAAAGCTGGTTCAATCC---CCGC    817
                     |.||||||  |||||  |.|||||..|..|||||.||| ||||   || .
BPUM_2282___h    773 TGATTGAGCAAAAGA--ATGATGTCATGCAGCTGTTTC-ATCCAAACC-A    818

BSNT_03795___    818 GCACGGGAATTTCGATTAAAATCGGAAAAGAAAACGACTATGAAGAGATG    867
                     ||| .||.||..|.|||||||||||...|||||||.|.|..||||..|||
BPUM_2282___h    819 GCA-AGGCATCACCATTAAAATCGGTTCAGAAAACAATTTGGAAGCAATG    867

BSNT_03795___    868 GAAAATTGCAGTCTGATTACGGCTTCTTATTCCGTAGA-CCAGAAGCAGA    916
                     ||.||.||||||.||||.|||||..|||||||..|.|| |.|.||.|| .
BPUM_2282___h    868 GAGAACTGCAGTTTGATCACGGCGACTTATTCGATTGATCAAAAATCA-C    916

BSNT_03795___    917 TCGGCTCAATTGCGATTATCGGCCCGACCCGCATGAATTATTCCAGG---    963
                     |||||||.|||||..|.|||||.||.|||||||||.||||   |.||   
BPUM_2282___h    917 TCGGCTCCATTGCCGTCATCGGACCAACCCGCATGGATTA---CGGGCGA    963

BSNT_03795___    964 GTTGTCAGCCTGCTTCAGCATGTGACTTCGGACTTGTCAAAAGCA-TTAA   1012
                     ||.||.||.||..|.||.|||||..|....|||||||||||.||| ||..
BPUM_2282___h    964 GTCGTTAGTCTTTTACATCATGTATCAAAAGACTTGTCAAACGCACTTTC   1013

BSNT_03795___   1013 CAAGTCTGTATGATGAATAA   1032
                     ||| |.||||||||||.||.
BPUM_2282___h   1014 CAA-TTTGTATGATGAGTAG   1032


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