Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03798 and BPUM_2284
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:21
# Commandline: needle
# -asequence dna-align/BSNT_03798___lepA.1.24716.seq
# -bsequence dna-align/BPUM_2284___lepA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03798___lepA-BPUM_2284___lepA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03798___lepA-BPUM_2284___lepA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03798___lepA
# 2: BPUM_2284___lepA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1854
# Identity: 1479/1854 (79.8%)
# Similarity: 1479/1854 (79.8%)
# Gaps: 30/1854 ( 1.6%)
# Score: 5897.0
#
#
#=======================================
BSNT_03798___ 1 GTGACAGATAAAGAAAAGCGTTTAGAGAGGCAATCGAGAATACGGAATTT 50
|||||||||||||||||.||.|||||..|||||||.|||||.||.|||||
BPUM_2284___l 1 GTGACAGATAAAGAAAAACGATTAGAACGGCAATCAAGAATTCGAAATTT 50
BSNT_03798___ 51 CTCTATCATTGCCCATATTGACCACGGAAAATCGACCTTAGCGGATCGTA 100
|||.||.||.|||||||||||||||||.|||||.||.||.||.||.||||
BPUM_2284___l 51 CTCCATTATCGCCCATATTGACCACGGGAAATCAACATTGGCCGACCGTA 100
BSNT_03798___ 101 TTTTAGAAAAAACGTCGGCAATCACTCAACGAGAAATGAAAGAACAATTG 150
|||||||||||||..||||.||.||.||.||||||||||||||||||||.
BPUM_2284___l 101 TTTTAGAAAAAACAGCGGCGATTACACAGCGAGAAATGAAAGAACAATTA 150
BSNT_03798___ 151 CTCGATTCTATGGATCTT-GAACGTGAGCGGGGCATAACCATTAAATTAA 199
||.|||||.||||| ||| ||.|||||.||.||||||||.||||||||||
BPUM_2284___l 151 CTTGATTCCATGGA-CTTAGAGCGTGAACGCGGCATAACGATTAAATTAA 199
BSNT_03798___ 200 ACTCTGTTCAGCTTAAATATAAAGCAAAAGACGGAGAAGAATATATCTTT 249
|||||||.|||||.||||||||.||.||.||.||||||||||||||..|.
BPUM_2284___l 200 ACTCTGTCCAGCTGAAATATAAGGCGAAGGATGGAGAAGAATATATTATG 249
BSNT_03798___ 250 CATCTAATCGATACGCCGGGACACGTCGACTTCACGTATGAAGTATCCCG 299
||.||.||.|||||.||.||.||.|||||||||||.|||||.||.||.||
BPUM_2284___l 250 CACCTGATTGATACACCAGGGCATGTCGACTTCACCTATGAGGTTTCTCG 299
BSNT_03798___ 300 AAGCCTTGCTGCCTGCGAGGGAGCGATTCTTGTCGTGGATGCAGCCCAGG 349
|||||||||||||||.||.||.||.|||||.||.||.||||||||.||.|
BPUM_2284___l 300 AAGCCTTGCTGCCTGTGAAGGTGCAATTCTCGTAGTAGATGCAGCACAAG 349
BSNT_03798___ 350 GGATTGAAGCGCAGACGCTCGCCAATGTCTACTTAGCGCTTGACAACGAT 399
|.||||||||.|||||.||.||.||.||.||.|||||.|||||.|| .|.
BPUM_2284___l 350 GAATTGAAGCACAGACACTTGCAAACGTTTATTTAGCTCTTGATAA-TAA 398
BSNT_03798___ 400 CTT-GAAATCCTTCCGGTCATCAATAAAATCGACCTTCCGAGCGCCGAGC 448
||| |||||.||||||.|.||||||||||||||.||.||.||.||.||||
BPUM_2284___l 399 CTTAGAAATTCTTCCGATTATCAATAAAATCGATCTGCCAAGTGCAGAGC 448
BSNT_03798___ 449 CCGAACGTGTGCGCCAAGAGG-----TAGAAGACGTTATCGGCCTTGACG 493
|.||.||||| |||||| |.|||||.||.|||||..|.||.|
BPUM_2284___l 449 CTGAGCGTGT-----AAGAGGAGAAATTGAAGATGTCATCGGGTTGGATG 493
BSNT_03798___ 494 CATCAGAAGCCGTGCTTGCTTCAGCAAAAGCCGGTATCGGGATTGAGGAG 543
|.||.|||||.||.||..|.||.||.||.||.|||||.|||||.||.||.
BPUM_2284___l 494 CGTCTGAAGCTGTTCTCACCTCGGCTAAGGCGGGTATTGGGATCGAAGAT 543
BSNT_03798___ 544 ATTTTAGAACAAATCGTAGAAAAGGTGCCAGCTCCGACCGGAGATCCGGA 593
|||||||||||||||||.||||||||.|||||.||..|.|||||.||.||
BPUM_2284___l 544 ATTTTAGAACAAATCGTCGAAAAGGTACCAGCACCTGCTGGAGACCCAGA 593
BSNT_03798___ 594 GGCGCCGCTCAAAGCGCTGATCTTCGACTCGCTTTATGACGCCTACCGCG 643
.||.|||||..||||.||.||.||.||.||.|||||.||.||.||.||||
BPUM_2284___l 594 AGCACCGCTTCAAGCTCTTATATTTGATTCTCTTTACGATGCGTATCGCG 643
BSNT_03798___ 644 GTGTCGTGGCTTATATCAGAGTCGTTGAAGGAACGGTAAAGCCGGGACAA 693
|.||..|.||.||.||..||.|.||.||||||||.||.||.||.||.||.
BPUM_2284___l 644 GCGTTATTGCGTACATACGAATTGTGGAAGGAACCGTCAAACCAGGTCAG 693
BSNT_03798___ 694 AAAATCAAAATGATGGCAACCGGCAAAGAATTCGAAGTAACAGAGGTGGG 743
|||||||||||||||||.||.|||||||||||.||||||...||.||.||
BPUM_2284___l 694 AAAATCAAAATGATGGCGACGGGCAAAGAATTTGAAGTACTTGAAGTCGG 743
BSNT_03798___ 744 CGTGTTCACGCCGAAAGCAACTCCGACAAATGAACTGACGGTCGGTGATG 793
|||.|||||.||.|||||.|..||||||.|.|||||.||.||.||.||||
BPUM_2284___l 744 CGTATTCACACCAAAAGCCATGCCGACAGACGAACTCACTGTTGGAGATG 793
BSNT_03798___ 794 TAGGCTTCCTGACTGCCTCAATCAAAAATGTCGGTGACACACGTGTCGGT 843
|.||||.|.|.||.||..||||.|||||||||||.||.||||||||.||.
BPUM_2284___l 794 TTGGCTACTTAACAGCAGCAATTAAAAATGTCGGCGATACACGTGTGGGG 843
BSNT_03798___ 844 GATACAATAACGAGCGCTGCCAATCCTGCAGAAGAAGCGCTGCCGGGATA 893
|||||.||.||.||.||.|..||.||.|||.|||||||.|||||.|||||
BPUM_2284___l 844 GATACGATCACAAGTGCGGTGAACCCAGCACAAGAAGCACTGCCAGGATA 893
BSNT_03798___ 894 CCGCAAGCTAAACCCGATGGTGTACTGTGGTTTGTATCCGATTGATACAG 943
|.|.|||||.||.||||||||.|||||.|||.|.|||||||||||.||||
BPUM_2284___l 894 CAGAAAGCTGAATCCGATGGTTTACTGCGGTCTTTATCCGATTGACACAG 943
BSNT_03798___ 944 CGAAGTATAATGATTTAAGGGAAGCTCTTGAAAAGCTTGAGCTGAATGAT 993
||||.|||||.||.|||.|.|||||.||.|||||||||||..|.||||||
BPUM_2284___l 944 CGAAATATAACGACTTACGTGAAGCGCTAGAAAAGCTTGAATTAAATGAT 993
BSNT_03798___ 994 TCCTCCCTTCAATATGAAGCGGAAACTTCGCAAGCGCTTGGATTCGGGTT 1043
||.||.|||||||||||.||.||.||.||.|||||.|||||.|||||.||
BPUM_2284___l 994 TCTTCACTTCAATATGAGGCAGAGACATCCCAAGCACTTGGCTTCGGTTT 1043
BSNT_03798___ 1044 CCGCTGCGGATTTTTAGGCATGCTTCACATGGAGATCATTCAGGAGCGAA 1093
|||||||||.|||.|.||.||||||||.|||||.|||||.||.||.||.|
BPUM_2284___l 1044 CCGCTGCGGCTTTCTTGGAATGCTTCATATGGAAATCATCCAAGAACGGA 1093
BSNT_03798___ 1094 TTGAGCGTGAGTTCAACATCGACCTGATTACGACAGCGCCAAGCGTTATC 1143
||||.|||||.||.||.||.||.||.|||||||||||||||||.|||||.
BPUM_2284___l 1094 TTGAACGTGAATTTAAAATTGATCTTATTACGACAGCGCCAAGTGTTATT 1143
BSNT_03798___ 1144 TATGATGTGTATATGACAGACGGCGAAAAGGTCGTTGTCGACAACCCGTC 1193
||.|||||||||||||||||.||.|||||..||||.||.||.||||||||
BPUM_2284___l 1144 TACGATGTGTATATGACAGATGGAGAAAAAATCGTCGTAGATAACCCGTC 1193
BSNT_03798___ 1194 CAACATGCCGGATCCTCAAAAGATCGAAAGGGTTGAGGAGCCATACGTAA 1243
|||..||||.|||||.||||||||.|||.|..||||.||.||||||||.|
BPUM_2284___l 1194 CAATTTGCCTGATCCGCAAAAGATTGAACGAATTGAAGAACCATACGTGA 1243
BSNT_03798___ 1244 AAGCGACGATGATGGTGCCGAATGACTATGTCGGCGCTGTAATGGAGCTT 1293
||||.||.|||||||||||||||||.|||||.|||.||||.|||||||||
BPUM_2284___l 1244 AAGCAACAATGATGGTGCCGAATGATTATGTAGGCTCTGTCATGGAGCTT 1293
BSNT_03798___ 1294 TGCCAAGGAAAACGCGGCAATTTCATTGATATGCAGTATTTAGACGCAAA 1343
|||||||||||.|||||..||||||||||||||||||||.|.||.||.||
BPUM_2284___l 1294 TGCCAAGGAAAGCGCGGACATTTCATTGATATGCAGTATCTTGATGCGAA 1343
BSNT_03798___ 1344 CCGTGTCAGCATCATTTATGATATGCCATTAGCGGAAATCGTATATGAGT 1393
|||.||.|||||..|||||||.||.||.||.||.||.||||||||.||.|
BPUM_2284___l 1344 CCGCGTGAGCATTGTTTATGAAATTCCTTTGGCTGAGATCGTATACGAAT 1393
BSNT_03798___ 1394 TTTTTGATCAGCTGAAATCAAGCACTAAAGGCTATGCGTCCTTTGATTAT 1443
|.||||||||..|.||.||.|.|||.||||||||||||||||||||||||
BPUM_2284___l 1394 TCTTTGATCAATTAAAGTCCAACACAAAAGGCTATGCGTCCTTTGATTAT 1443
BSNT_03798___ 1444 GAACTGATCGGCTACAAACCGTCC----AAGCTTGTGAAAATGGACATTA 1489
||.|||||.|||| ||||||| |.|||.||||||||||||||.|
BPUM_2284___l 1444 GAGCTGATTGGCT----ACCGTCCATCGACGCTAGTGAAAATGGACATCA 1489
BSNT_03798___ 1490 TGCTGAATGGTGAAAAAATCGATGCCCTTTCCTTTATCGTGCATCGTGAT 1539
||||||||||.||||||||.|||||||||||||||||.||.||.||.|||
BPUM_2284___l 1490 TGCTGAATGGCGAAAAAATAGATGCCCTTTCCTTTATTGTTCACCGCGAT 1539
BSNT_03798___ 1540 TACGCATATGAACGGGGAAAAGTGATCGTTGAAAAACTGAAAGAACTCAT 1589
|||||.||||||||.||.|||.|.|||||.||.||.||.|||||||||||
BPUM_2284___l 1540 TACGCCTATGAACGAGGCAAAATCATCGTAGATAAGCTAAAAGAACTCAT 1589
BSNT_03798___ 1590 TCCGCGCCAGCAGTTTGAAGTTCCGGTACAAGCCGCAATCGGCCAGAAAA 1639
|||.||||||||.||||||||.||..|.|||||.||.||.||.||.||||
BPUM_2284___l 1590 TCCACGCCAGCACTTTGAAGTACCAATTCAAGCGGCGATTGGACAAAAAA 1639
BSNT_03798___ 1640 TCGTGGCCCGCTCCACCATAAAAGCAATGCGTAAAAACGTATTGGCTAAA 1689
|||||||.|||||.|||||.|||||.|||||||||||||||.|.||||||
BPUM_2284___l 1640 TCGTGGCTCGCTCTACCATTAAAGCGATGCGTAAAAACGTACTTGCTAAA 1689
BSNT_03798___ 1690 TGTTACGGAGGGGACATCTCGCGTAAACGGAAACTTCTTGAAAAACAAAA 1739
|||||.||.||.|||||.||.||.|||.|.||.||||||||.||.|||||
BPUM_2284___l 1690 TGTTATGGCGGAGACATTTCCCGAAAAAGAAAGCTTCTTGAGAAGCAAAA 1739
BSNT_03798___ 1740 AGAA-GGAAAACGCCGTATGAAGCAGGTCGGCTCAGTTGAAGTGCCGCAA 1788
|||| ||||||.| ||.|||||.||.||.|||||.||||||||.||||||
BPUM_2284___l 1740 AGAAGGGAAAAAG-CGCATGAAACAAGTGGGCTCTGTTGAAGTCCCGCAA 1788
BSNT_03798___ 1789 GAAGCATTTATGGCAGTTCTGAAAATGGACGACAG---TCCGAAAAAACA 1835
||||||||||||||.||.|||||.||||||||||| .|||||||||.|
BPUM_2284___l 1789 GAAGCATTTATGGCTGTGCTGAAGATGGACGACAGCACACCGAAAAAATA 1838
BSNT_03798___ 1836 ATAG 1839
|
BPUM_2284___l 1839 A--- 1839
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