Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03801 and BPUM_2287
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:21
# Commandline: needle
# -asequence dna-align/BSNT_03801___gpr.1.24716.seq
# -bsequence dna-align/BPUM_2287___gpr.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03801___gpr-BPUM_2287___gpr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03801___gpr-BPUM_2287___gpr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03801___gpr
# 2: BPUM_2287___gpr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity: 816/1151 (70.9%)
# Similarity: 816/1151 (70.9%)
# Gaps: 79/1151 ( 6.9%)
# Score: 2760.0
#
#
#=======================================
BSNT_03801___ 1 AT---GAAAAAGAGTGAGCTGGATGTGAATCAGTATTTGATACGTACCGA 47
|| ||||.||| |.||.|||.|.|.|...|||...||.||.||.||
BPUM_2287___g 1 ATGGAGAAACAGA---AACTTGATTTAAGTGCTTATCAAATTCGGACAGA 47
BSNT_03801___ 48 TTTGGCAGTGGAAACGAAGGA--------AGCAA-TGGCCAATCAGCAGG 88
.||.||.||.||.||.||.|| |.||| .|..|.|||.|.|
BPUM_2287___g 48 CTTAGCTGTTGAGACAAAAGAGATACTAGAACAAGAGAACGATCCGAA-- 95
BSNT_03801___ 89 CTGTGCCGACAAAAGA---AATTAAAGGCTTT------ATTGAAAAAGAG 129
|||....|||||.|| ||||.||||..|| |..|||||||||
BPUM_2287___g 96 -TGTCATTACAAAGGATGGAATTCAAGGGATTGTCGAAAAGGAAAAAGAG 144
BSNT_03801___ 130 CGTGATCATGGCGGCATTAAAATCCGCACAGTTGATGTTACAAAGGAAGG 179
||.|| |||||||...||.|||||.||.||..|.||.||.|||||
BPUM_2287___g 145 ---GAGCA---CGGCATTCGTATACGCACGGTGGAGATCACGAAAGAAGG 188
BSNT_03801___ 180 CGCAGAGCTTTCGGGAAAAAAAGAAGGGCGCTATTTAACGCTTGAAGCAC 229
.|..|.|||..|..|.|||||.|.|||....||.|||||.|||||.||.|
BPUM_2287___g 189 GGAGGCGCTGACCAGCAAAAAGGCAGGAACATACTTAACACTTGAGGCTC 238
BSNT_03801___ 230 AGGGAATCAGGGAGAATGATTCGGAAATGCAGGAGAA---GGTCTCTGCT 276
||||.||..|||||||.|||||.||.||||||||.|| |||| |..
BPUM_2287___g 239 AGGGTATTCGGGAGAAAGATTCTGAGATGCAGGAAAAAGTGGTC---GAA 285
BSNT_03801___ 277 GTCTTTGCGGAGGAATT--CTCAGCTTTTCTTGAAAACCTTAATATC--- 321
||.|||||..|..|.|| |||||.|||| || ||.|||
BPUM_2287___g 286 GTTTTTGCCCATCATTTTGCTCAGTTTTT------AA----AAGATCGAG 325
BSNT_03801___ 322 ----TCA-AAAGATGCGAGCTGT-TTGATCGTTGGGCTCGGCAACTGGAA 365
||| |..|||||.|||||| ||| |.||.|||||.||.||||||||
BPUM_2287___g 326 GCATTCAGACTGATGCAAGCTGTCTTG-TAGTAGGGCTAGGAAACTGGAA 374
BSNT_03801___ 366 CGTGACACCTGATGCGCTTGGACCGATGGCAGTAGAAAATCTGTTGGTAA 415
.||.||.||.||||||||.||.|||.|..||||.||||.||||.|.||.|
BPUM_2287___g 375 TGTCACGCCAGATGCGCTAGGTCCGCTCACAGTTGAAAGTCTGCTTGTGA 424
BSNT_03801___ 416 CAAGGCA-CTTGTTTAAGCTT-CAGCCGGAAAACGTACAGGAGGGTTACA 463
|..|||| |||.||.|| || |||||||||||.||||||||.||.|||.
BPUM_2287___g 425 CCCGGCATCTTTTTGAA--TTGCAGCCGGAAAATGTACAGGAAGGCTACC 472
BSNT_03801___ 464 GGCCTGTCAGTG----CTTTTGCACCGGGTGTAATGGGGATAACAGGAAT 509
|.| ||||| ||||..|||||||.||.|||||..||||.||.||
BPUM_2287___g 473 GCC----CAGTGTCCTCTTTATCACCGGGAGTGATGGGACTAACCGGCAT 518
BSNT_03801___ 510 CGAAACAAGTGACATTATTAAAGGTGTGATTGAGCAATCGAAGCCTGATT 559
.||||||||.|||||.|||.|||||||.||.|||...||.||.||.||||
BPUM_2287___g 519 TGAAACAAGCGACATAATTCAAGGTGTCATCGAGAGGTCCAAACCCGATT 568
BSNT_03801___ 560 TTGTCATCGCCATTGATGCGTTGGCGGCGCGGGCGGTGGAAAGGGTCAAC 609
|||||||.||.||.|||||..|.||.||.||.||.||.|||||.||.||.
BPUM_2287___g 569 TTGTCATTGCAATCGATGCCCTTGCTGCTCGTGCAGTAGAAAGAGTGAAT 618
BSNT_03801___ 610 ACAACCATTCAAATATCGGATACAGGCATTCACCCGGGATCTGGAGTGGG 659
||.||.||||||||.||.||.|||||.||.||.||.||.||.||.||.||
BPUM_2287___g 619 ACGACGATTCAAATCTCTGACACAGGGATCCATCCTGGTTCAGGTGTAGG 668
BSNT_03801___ 660 GAATAAACGAAAAGATTTAAGCAAAGACACGCTTGGTGTTCCGGTGATTG 709
|||||||||||||||.|||||||||||.|||.|.|||.||||.|||||||
BPUM_2287___g 669 GAATAAACGAAAAGAATTAAGCAAAGAAACGTTGGGTATTCCAGTGATTG 718
BSNT_03801___ 710 CTATCGGTGTTCCGACAGTAGTTGATGCCGTGACAATTGCCAGCGACACG 759
|.||.||||||||||||||.||.||.||.||.||.|||||.||.|||||.
BPUM_2287___g 719 CGATTGGTGTTCCGACAGTCGTAGACGCAGTCACCATTGCAAGTGACACA 768
BSNT_03801___ 760 GTGGACTACATATTAAAACATTTTGGCAGAGAAATGAAGGATAACAGGCC 809
.|.||.||..|.|||||.||||||||.||||||.||||.|||.||.||||
BPUM_2287___g 769 ATTGATTATGTCTTAAAGCATTTTGGTAGAGAACTGAAAGATGACCGGCC 818
BSNT_03801___ 810 ATCAAGATCGCTTGTTCCGGCAGGCATGACGTTTGGGAAAAAGAAAGTGC 859
|||..|.||.||.||.|||||.||..|||||||||||||.||.|||||||
BPUM_2287___g 819 ATCCCGCTCTCTCGTGCCGGCTGGTTTGACGTTTGGGAAGAAAAAAGTGC 868
BSNT_03801___ 860 TCACTGAAGAAGATCTT-CCCGATCA--AAAGCAGCGCCAATCGTTCCTA 906
|.|..|||||||| ||| ||.|||.| ||| .|||.|||||.|||.||
BPUM_2287___g 869 TAAACGAAGAAGA-CTTACCAGATGAGGAAA--CGCGTCAATCATTCTTA 915
BSNT_03801___ 907 GGGATTGTCGGAACCCTTCAAGAAGATGAAAAACGGCAGCTCATTCACGA 956
||.||.||.|||||.||||.||||||.||.|||||.|||||.||.||.||
BPUM_2287___g 916 GGTATCGTAGGAACTCTTCCAGAAGAAGAGAAACGACAGCTGATCCATGA 965
BSNT_03801___ 957 GGTGCTTTCGCCTTTAGGGCACAACTTAATGGTTACACCGAAGGAAGTCG 1006
.||||||.||||..|||||||.||..|.|||||||||||.||||||||.|
BPUM_2287___g 966 AGTGCTTGCGCCACTAGGGCAAAATCTCATGGTTACACCTAAGGAAGTGG 1015
BSNT_03801___ 1007 ATTCATTTATCGACGATATGGCAAATGTTTTAGCGAACGGATTAAACACA 1056
||.||||.||.||.|||||||||||.||..|.||.||.||.|||||||||
BPUM_2287___g 1016 ATACATTCATTGATGATATGGCAAACGTACTCGCCAATGGTTTAAACACA 1065
BSNT_03801___ 1057 GCGCTTCATGAAAAAGTGTCACAAGAAAACAAAGGCTCCTACAATCACTA 1106
|||||||||.|||||.|.||.|||||.||||..||.||.||.|||||.||
BPUM_2287___g 1066 GCGCTTCATCAAAAAATCTCTCAAGATAACATGGGTTCTTATAATCATTA 1115
BSNT_03801___ 1107 A 1107
|
BPUM_2287___g 1116 A 1116
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