Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03809 and BPUM_2291

See Amino acid alignment / Visit BSNT_03809 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_03809___comEC.1.24716.seq
#    -bsequence dna-align/BPUM_2291___comEC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03809___comEC-BPUM_2291___comEC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03809___comEC-BPUM_2291___comEC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03809___comEC
# 2: BPUM_2291___comEC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2709
# Identity:    1443/2709 (53.3%)
# Similarity:  1443/2709 (53.3%)
# Gaps:         786/2709 (29.0%)
# Score: 3313.0
# 
#
#=======================================

BSNT_03809___      1 -------------------ATGGCGGCAGCTTCGGCAACGGCTGGAATTA     31
                                        .||| ||||..|||.|||.|.|.|||||||.
BPUM_2291___c      1 ATGTTTAATTATTTGCCGTTTGG-GGCAATTTCAGCAGCTGTTGGAATTG     49

BSNT_03809___     32 CTGCCGCCGC---------------TTATTTCCCCGCTATTTTTCTTTTC     66
                     ||...||.||               .|||||||   .|.|.||||||.||
BPUM_2291___c     50 CTCTAGCTGCATATCATCTTCATATGTATTTCC---TTCTCTTTCTTCTC     96

BSNT_03809___     67 ATCCTCTTTCTCCTCATCATTTTAATCAAAA---CGAGGCACGCT-TTTC    112
                     ||..||||.||.||||.|.|..|||..||||   |    ||..|| ||||
BPUM_2291___c     97 ATTATCTTACTTCTCAGCCTACTAAAAAAAATCCC----CAAACTCTTTC    142

BSNT_03809___    113 TCAT--------TATTGT----TTGTTT-----CTTCTCTTTTATATT--    143
                     ||.|        || |||    .|||.|     |||.| ||||||..|  
BPUM_2291___c    143 TCGTGGTCAGCCTA-TGTGGAGCTGTCTATACCCTTAT-TTTTATGGTTC    190

BSNT_03809___    144 ----GTTTTTTGTA----------CTGTATGCAGTCACAGATTCTCAGAA    179
                         ||||||||.|          ||||      ||| |||     |.||
BPUM_2291___c    191 ATGAGTTTTTTGAAACAGATCAACCTGT------TCA-AGA-----AAAA    228

BSNT_03809___    180 TGTCTCTTCCTATCGGCAGGGAACCTATCAATTCAAGGCAGTGATTGACA    229
                     | |||.|||    ||||          ||..||       ||||||||.|
BPUM_2291___c    229 T-TCTTTTC----CGGC----------TCCGTT-------GTGATTGAAA    256

BSNT_03809___    230 CTATTCCCAAAATTGACGGCGACCG------------TATGTCTATGATG    267
                     |||||||.||||..||.|||.|.||            |.|||||      
BPUM_2291___c    257 CTATTCCGAAAACAGATGGCAATCGATTTTCAGCAACTGTGTCT------    300

BSNT_03809___    268 GTTGAGACACCTGAT-AAGGAAAAATGGGCTGCTGCGTATCGCATTCAGT    316
                           |||..|||| ||.||..|    ||.|||...|||..||||||..
BPUM_2291___c    301 ------ACAAGTGATGAACGACTA----GCGGCTTTCTATACCATTCAAA    340

BSNT_03809___    317 CTGCTGGTGAAAAAGA-ACAGCTGTTATACATAGAACCAGGAATGTCATG    365
                     |.|...|||||||||| .|| ||...|.||.||||.|||||.|||...||
BPUM_2291___c    341 CAGAGCGTGAAAAAGAGGCA-CTAAAAGACGTAGAGCCAGGTATGAGCTG    389

BSNT_03809___    366 TGAGTTGACTGGTACATTGGAAG------AACCGAATCACGCAAC----T    405
                     |.|..||||.|||      ||||      ..||.||.||||||||    |
BPUM_2291___c    390 TCATATGACAGGT------GAAGTTCGGCCGCCTAAACACGCAACCATTT    433

BSNT_03809___    406 GTGCCGGGTGCATTTGATTATAACGAGTATCT-TTATC----GGCAGCAT    450
                     .|..||||    |||.|||||.|..|.|.||| ..|||    |||     
BPUM_2291___c    434 CTAACGGG----TTTCATTATGATCAATTTCTAAAATCAAAAGGC-----    474

BSNT_03809___    451 ATTCATTGGAACTACTCTGTCAC----GTCTATTCAAA-ACTGCAGCGAA    495
                     ||||||    .|.|.|.|.|.||    ||| |.||||| ||||.|     
BPUM_2291___c    475 ATTCAT----GCCATTTTCTTACCGCAGTC-AATCAAAGACTGTA-----    514

BSNT_03809___    496 CCTGAAAATTTTAAGTACAAGGTGCTCAGCTTGAGAAAACATATCATATC    545
                      |..|||||           |.|..||  |||       |.|||  ||||
BPUM_2291___c    515 -CAAAAAAT-----------GATCGTC--CTT-------CCTAT--TATC    541

BSNT_03809___    546 ATTCA----------CAAACAGCCTTT--------------------TGC    565
                      ||||          |||| ||..|||                    |||
BPUM_2291___c    542 -TTCAAAAGATGAGGCAAA-AGGGTTTAAGATTCTTAGAAGATCATGTGC    589

BSNT_03809___    566 CTCCTG----ATTCGGCAGGGATTGTACAGGCACTTACAGTTGGTGAC--    609
                     |    |    |.||.|.||||||||||||.||.||.|...||||.|||  
BPUM_2291___c    590 C----GAAAAACTCTGTAGGGATTGTACAAGCTCTCATTTTTGGAGACCG    635

BSNT_03809___    610 AGATTTTATGTGGAGGATGAAGTGCTTAC--------CGCGTATCAAAAG    651
                     .||.||.||        |||  |.||.||        .|..|||||||.|
BPUM_2291___c    636 TGACTTAAT--------TGA--TCCTGACACACTAAGAGACTATCAAATG    675

BSNT_03809___    652 CTTGGTGTTGTCCATCTCTTGGCAATATCAGGACTCCACGTGGGGATTTT    701
                     ||.||..||.|.|||||.||.||.||.||||||||.||.|||        
BPUM_2291___c    676 CTCGGCATTATTCATCTGTTAGCGATCTCAGGACTGCATGTG--------    717

BSNT_03809___    702 GACA----------GCAGGTTTGTTTT-ATATCATGATTCGCCTTGGTAT    740
                       ||          ||..||||.|||| .|.|| |..||||...||||.|
BPUM_2291___c    718 --CAAACGCTTCTTGCCTGTTTATTTTGGTGTC-TCCTTCGTGCTGGTGT    764

BSNT_03809___    741 AACTAGAGA-AAAG-GCGTCAATTCTGTTGCTGTTA---TTTCTGCCGCT    785
                     .||.||||| |.|| |||||  |||   |.||.|||   |||||.||..|
BPUM_2291___c    765 GACAAGAGAGACAGCGCGTC--TTC---TTCTATTATGCTTTCTTCCTGT    809

BSNT_03809___    786 CTATG--TGATGTTGACCGGCGCTGCTCCTTCAGTGCTACGCGC-CGCTC    832
                     .||||  ||  .|||||.||.|||||.||.|||||..||.|.|| .|| |
BPUM_2291___c    810 TTATGCCTG--TTTGACAGGTGCTGCACCATCAGTTTTAAGAGCTTGC-C    856

BSNT_03809___    833 TCATGTCGGGTGTTTACTTAGCTG----GAAGCCTTGTCAAATG------    872
                     |||||.|.||..|.||.|||| ||    .||||| ||.||||.|      
BPUM_2291___c    857 TCATGGCAGGAATCTATTTAG-TGATGACAAGCC-TGCCAAAAGAAATGA    904

BSNT_03809___    873 ----GCGTGTCCACTCTGC---------AACTGCAA--TTTGTCTTTCAT    907
                         ||.|      |||||         ||..||||  |||.|.||    
BPUM_2291___c    905 AACAGCCT------TCTGCTGTCGTATTAAGCGCAACGTTTTTATT----    944

BSNT_03809___    908 ACATCGTCCTTCT--GCTCTTCAATCCT-TATCATCTCTTTGAAGCCGGT    954
                             |||.|  ||..||| ||||| ||| ||||.|||||...|||.
BPUM_2291___c    945 --------CTTATTAGCGATTC-ATCCTCTAT-ATCTATTTGATATCGGA    984

BSNT_03809___    955 TTTCAGCTATCGTTCGCCGT--CAGTTTTTCTTTAATT-CTATC------    995
                     ||||||||.||.||||..||  ||.|||||.|   ||| .||||      
BPUM_2291___c    985 TTTCAGCTTTCATTCGTGGTAACACTTTTTAT---ATTGTTATCGACCAG   1031

BSNT_03809___    996 -CTCTTCTATTTTTCAT--CAGGTTAAAACCTCCTTGGGGCAGCTGA--C   1040
                      .||||         ||  ||.|..||||        |.|||| |||  |
BPUM_2291___c   1032 AATCTT---------ATCGCAAGCGAAAA--------GCGCAG-TGATGC   1063

BSNT_03809___   1041 AATTGT-----ATCAC--TCATCGCTCAGCTGGGCTCGCTTCCGATTCTC   1083
                     |.||||     |||.|  |.||.||.||.||.|.|||||||||..||||.
BPUM_2291___c   1064 AGTTGTTCCTGATCTCTTTTATTGCACAACTTGCCTCGCTTCCTGTTCTT   1113

BSNT_03809___   1084 CTATATCATTTTCATCAGTTTTCTATCATCAGCGTACCGATGAATATGTT   1133
                     .|||||||||||||.||.||||||.|..|.|||.|.||..||||||||.|
BPUM_2291___c   1114 TTATATCATTTTCAACAATTTTCTTTGCTGAGCATCCCATTGAATATGAT   1163

BSNT_03809___   1134 GATGGTACCATTTTATAC-------------CTTCTGTATTTTGCCGGGA   1170
                     ..|.||.||.||||||||             |.|||||..||        
BPUM_2291___c   1164 ATTTGTCCCTTTTTATACAACAGTTGTCCTGCCTCTGTCCTT--------   1205

BSNT_03809___   1171 GCTGTAGCAGGTGTTCTTCTATTAAGTCTTTC------CGTTTCGTTTGG   1214
                     .||.|        ||.||||.||  ||||.||      | ||.||.||||
BPUM_2291___c   1206 ACTCT--------TTTTTCTTTT--GTCTATCATTTATC-TTCCGCTTGG   1244

BSNT_03809___   1215 GAGATTGTT-TTTCAGCTGGTTTGATTTATTGATAAGCTGGACCAATAGG   1263
                     ...|.|||| ||.||.|| |.||||||...|.||        |||    |
BPUM_2291___c   1245 ACAAATGTTGTTCCAACT-GCTTGATTCGGTCAT--------CCA----G   1281

BSNT_03809___   1264 CTAA-----------TCA-CAAACATTGCAGATGTTGAAGTGTTCA---C   1298
                     ||||           ||| ||.|.||.||||.|.||||.|.|||||   .
BPUM_2291___c   1282 CTAAGTCATCAGTTGTCAGCACATATGGCAGTTTTTGATGGGTTCAATTT   1331

BSNT_03809___   1299 GA---TTATGA-----------TCGCACATCCT-----------GCACC-   1322
                     ||   ||||||           |.|||.||.||           ||||| 
BPUM_2291___c   1332 GATATTTATGAAATCGACTTGGTGGCATATTCTTCTTGAAGTGAGCACCA   1381

BSNT_03809___   1323 -TGTTTTGCTTTTTTTATTCACGGTCACGATCATCCTATTGCTTATGG-C   1370
                      ||||||.|                        |.||||   |||||| .
BPUM_2291___c   1382 TTGTTTTTC------------------------TGCTAT---TTATGGTG   1404

BSNT_03809___   1371 GATTGAAAAACGCTCCTTGTCGCAGTTGATGGTAACCGGAGGCATTTGCT   1420
                     ||.||.||.| |.|||.||              ||        ||.|  |
BPUM_2291___c   1405 GAGTGCAATA-GTTCCATG--------------AA--------ATCT--T   1429

BSNT_03809___   1421 GCACGGTGATGTTTCTGCTCTTTATATATCCGTGTCTT-AGT--------   1461
                     ..|..|||..|.|||||    |||..|||..||||||| |||        
BPUM_2291___c   1430 ATATCGTGCCGATTCTG----TTACTTATTGGTGTCTTGAGTGTGCACTA   1475

BSNT_03809___   1462 ------TCCG-------------AAGGAGAAGTGGATATGATAGATATTG   1492
                           ||||             |||||||.||....|||.|.|||.|.|
BPUM_2291___c   1476 TTTCACTCCGAATTTTCTTCAAAAAGGAGAGGTCACGATGCTGGATGTAG   1525

BSNT_03809___   1493 GACAGGGTGACAGCATGTTTGTAGGT--GCTCCGCATCAGCG---GGGGC   1537
                     ||||.||.||.||..|||||.|   |  ||||  |.|.|.||   |||.|
BPUM_2291___c   1526 GACAAGGGGATAGTTTGTTTAT---TCAGCTC--CCTTACCGAAAGGGAC   1570

BSNT_03809___   1538 GTGT-CTTAATTGATACCGGCGGC--ACTTTGTCTTACTCGTCAGAGCCT   1584
                     .|.| ||| .|.||.||.||.|||  |||||.|.||..|..|  ||.||.
BPUM_2291___c   1571 ATCTACTT-GTGGACACAGGTGGCAGACTTTCTTTTGATGAT--GAACCA   1617

BSNT_03809___   1585 TGGCGCGAAAAACAGCATCCGT----TTTC-AC--TGGGGGA--AAAGGT   1625
                     ||    ||||||.||   .|||    |.|| ||  |.||.||  |||  .
BPUM_2291___c   1618 TG----GAAAAAAAG---ACGTAAAGTGTCTACGATTGGTGATCAAA--C   1658

BSNT_03809___   1626 GCTGATTCCGTTTTTAACTGCTAAGGGAAT---CAAACAGCTTGACGCTT   1672
                     |||.|||||||||||...|.|.||.||.||   .|||   |||||.|...
BPUM_2291___c   1659 GCTAATTCCGTTTTTGCATTCAAAAGGTATAGCGAAA---CTTGATGTGC   1705

BSNT_03809___   1673 TAATTCTGACGCACGCTGACCAAGATCATATCGGAGAGGCGGAGACTC--   1720
                     |.|||||.|||||.||.||||||||.||.||.|||||.||   ||.||  
BPUM_2291___c   1706 TGATTCTCACGCATGCAGACCAAGACCACATGGGAGAAGC---GATTCGT   1752

BSNT_03809___   1721 -TGCTGAAGCATCATAAAGTAAAGCGCCTCGTGATTCCGAAAGGGTTCGT   1769
                      |..|.||||...|.|||||||||||.||.|..||.||.|||||.||  |
BPUM_2291___c   1753 TTAATCAAGCGAAAGAAAGTAAAGCGGCTGGCTATACCAAAAGGTTT--T   1800

BSNT_03809___   1770 TTCTGAA--CCTAAAGATGAGAAAGTGCT-------GCAGACAGCCAGAG   1810
                     ..|.|||  ||..|.|||||.|||.||||       ||||     |.|| 
BPUM_2291___c   1801 GCCCGAAATCCAGAGGATGAAAAACTGCTAAAAGAAGCAG-----CTGA-   1844

BSNT_03809___   1811 AAGAGGGA--GTGACAATTGAAGAGGT-GAAGCGAGGCGA----------   1847
                     ||.|||||  |||   |||||.||..| ||| .||||.||          
BPUM_2291___c   1845 AAAAGGGATCGTG---ATTGATGAATTAGAA-AGAGGAGACCAGCTCCAA   1890

BSNT_03809___   1848 --TGTATTGCAAATAAAGGATTTGCAGTTCCATGTACTGTCACC--TGG-   1892
                       ||.|..|||.||     |||||..||||        .|||||  |.| 
BPUM_2291___c   1891 GTTGGAGAGCACAT-----ATTTGAGGTTC--------TTCACCCTTCGC   1927

BSNT_03809___   1893 -AGCACCTGATCCGGCAAGCAAAAATAATTCCTCTCTCGTTCT-------   1934
                      || ||.||.|  |.||||.||.||.|||...||.||.|||||       
BPUM_2291___c   1928 AAG-ACATGGT--GACAAGTAAGAACAATGATTCACTTGTTCTATCATTT   1974

BSNT_03809___   1935 ----GTGGATGGAGACGGGCGGTATGAGCTG--GATCTTGACGGGTGACC   1978
                         .|||..|||.||||....|||...|||  ||||||||      || 
BPUM_2291___c   1975 ACTCTTGGCGGGAAACGGTTCCTATTCACTGGAGATCTTGA------AC-   2017

BSNT_03809___   1979 TGGAGAAAGAAGGGGAACAGGAGGTGATGGACGTGTTTCCAAATATTAAA   2028
                           |.|||||.||||..||..|.||.||.|..|.|||..|..|...|
BPUM_2291___c   2018 ------ATGAAGGAGAACGAGACATTATAGAAGCCTATCCTCACCTGCGA   2061

BSNT_03809___   2029 GCAGATGTCTTAAAGGTGGGGCACCATGGGAGCAAAGGCTCTACCGGTGA   2078
                     |||||||||||||||||.|||||.||||||||||||||.||.||..||||
BPUM_2291___c   2062 GCAGATGTCTTAAAGGTTGGGCATCATGGGAGCAAAGGGTCAACAAGTGA   2111

BSNT_03809___   2079 AGAATTCATCCAACAGCTTCAGCCGAAAACGGCCATTATCTCAGCCGGGA   2128
                     .||.|...|.||.||.||..|||||...|..||..|.||.||.||.||..
BPUM_2291___c   2112 TGAGTGGCTTCAGCATCTGAAGCCGTCGATCGCGCTCATTTCGGCTGGTG   2161

BSNT_03809___   2129 AAAACAATCGGTACCATCATCCTCATCAAGAAGTTCTGCAACTATTACAG   2178
                     ||...|||||.||.||.|||||||||||.||.||..||.||..|.||.||
BPUM_2291___c   2162 AACGGAATCGTTATCAGCATCCTCATCAGGATGTCTTGAAAAAACTAAAG   2211

BSNT_03809___   2179 AGA-CAT----------TCTATCCGCGTGCTGCGAACAGATCAAAACGGA   2217
                      || |||          |.|||          ||.|||||.|.|.||||.
BPUM_2291___c   2212 -GATCATCAAACGAAGGTATAT----------CGCACAGACCGAGACGGG   2250

BSNT_03809___   2218 A---CGATCC----AA--TATAGATACAAAAACAGAGTTGGAACCTTTT-   2257
                     |   .|| ||    ||  |||.|| |||.|||       |||||.|||| 
BPUM_2291___c   2251 AGTGTGA-CCTTTGAATTTATTGA-ACAGAAA-------GGAACGTTTTA   2291

BSNT_03809___   2258 ----CTGTCTATCCTCCATATGAT--------ACATCAGATATAACAGAG   2295
                         |     ||||||||||||||        |.||||   ||||     
BPUM_2291___c   2292 CACAC-----ATCCTCCATATGATATCTTACAAAATCA---ATAA-----   2328

BSNT_03809___   2296 ACGAACTAA   2304
                              
BPUM_2291___c   2328 ---------   2328


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