Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03815 and BPUM_2297
See
Amino acid alignment /
Visit
BSNT_03815 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:22
# Commandline: needle
# -asequence dna-align/BSNT_03815___yqeK.1.24716.seq
# -bsequence dna-align/BPUM_2297___yqeK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03815___yqeK-BPUM_2297___yqeK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03815___yqeK-BPUM_2297___yqeK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03815___yqeK
# 2: BPUM_2297___yqeK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 586
# Identity: 393/586 (67.1%)
# Similarity: 393/586 (67.1%)
# Gaps: 47/586 ( 8.0%)
# Score: 1200.0
#
#
#=======================================
BSNT_03815___ 1 ATGAATCGTGAGGAGGCACTTGCA-TGCGTGAAGCAGCAATTGACCGAAC 49
|||||||||||.||.||| |||.| ||.||.||..||||.||.||.||.|
BPUM_2297___y 1 ATGAATCGTGAAGAAGCA-TTGAACTGTGTCAAAGAGCAGTTAACAGAGC 49
BSNT_03815___ 50 ACCGATATATCCATACGGTTGGCGTGATGAACACGGCGATCGAACTTGCG 99
|..||||||..|||||..||||.||.|||.|.||.||.||...|.|.|||
BPUM_2297___y 50 ATAGATATACACATACACTTGGAGTTATGGAGACAGCCATTTCATTAGCG 99
BSNT_03815___ 100 GAGCGTTTTGGAGCCGATTCTAAAAAAGCGGAAACAGCGGCAATCTTTCA 149
||.|||||.||.||.|||...||||||||.||.|..||.||.||.|||||
BPUM_2297___y 100 GAACGTTTCGGTGCAGATGTGAAAAAAGCAGAGATCGCCGCTATTTTTCA 149
BSNT_03815___ 150 TGATTACGCCAAATTCCGCCCGAAAGAAGAAATGAAACAAATTATTGCGC 199
||||||.||.|||||..|.||.||.||.||.|||||....|||||...||
BPUM_2297___y 150 TGATTATGCGAAATTTAGACCAAAGGATGAGATGAAGGGGATTATCCAGC 199
BSNT_03815___ 200 GAGAAAAAATG---CCTGCGCATTTATTGGATCATAAT--CCGGAGCTCT 244
..|||.|.||| ||| |..||..|||| |||.| ||.|||||.|
BPUM_2297___y 200 AGGAACAGATGAACCCT---CTATTGCTGGA--ATATTCGCCCGAGCTTT 244
BSNT_03815___ 245 GGCACGCTCCGGTCGGCGCTTATTTGGTCCAAAGAGAGGCAGGGGTTCAA 294
||||.||.||||||||.||.||||||||..|||..||.||||...||.|.
BPUM_2297___y 245 GGCATGCCCCGGTCGGTGCCTATTTGGTTAAAAAGGAAGCAGCTATTAAC 294
BSNT_03815___ 295 GATGAAGACATTCTTGAC-GCCATTAGGTATCATACCTCAGGGCGCCCCG 343
||..|||||||| ||.|| ||.|||...|.||||||.|||||..|.||..
BPUM_2297___y 295 GACCAAGACATT-TTAACGGCTATTGAATTTCATACATCAGGTAGACCAA 343
BSNT_03815___ 344 GCATGACACTTTTAGAAAAAGTCATTTACGTTGCCGATTACATTGAGCCA 393
.|||||||.|..|.|||||.||||||||.||.||.|||||.||.||.|||
BPUM_2297___y 344 ACATGACATTACTTGAAAAGGTCATTTATGTCGCTGATTATATCGAACCA 393
BSNT_03815___ 394 AATCGGG----CA-TTTCCCGGTGTCGATGAGGTGCGTAAGCTTGCTGAG 438
|| || |||||.|||||.||.||.||..|..||.|.||.|||
BPUM_2297___y 394 -----GGACGTCATTTTCCTGGTGTTGAAGAAGTAAGAGAGTTAGCAGAG 438
BSNT_03815___ 439 ACAGATTTGAATCAAGCGC--TGATTCAGTCCATTAAAAATACAAT--GG 484
..|||||||.|| ||||| ||||||||||..|.|||||.||.|| |.
BPUM_2297___y 439 CAAGATTTGGAT--AGCGCATTGATTCAGTCACTGAAAAACACGATCAGC 486
BSNT_03815___ 485 TTTTT-CTTATGAAAAAAAATCAACCGGTTTTTCCAGACACATTTTTAAC 533
||||| | |||||||.|||||.||.||.||||||||.||..|...|||
BPUM_2297___y 487 TTTTTGC---TGAAAAAGAATCAGCCAGTCTTTCCAGATACGCTCGCAAC 533
BSNT_03815___ 534 ATATAACTGGCTTGTGTCTGGCAGCTGA-------- 561
.||.||||..||||| |||...||
BPUM_2297___y 534 TTACAACTCACTTGT-----GCATAAGAACAATTAA 564
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.