Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03816 and BPUM_2298

See Amino acid alignment / Visit BSNT_03816 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_03816___nadD.1.24716.seq
#    -bsequence dna-align/BPUM_2298___nadD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03816___nadD-BPUM_2298___nadD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03816___nadD-BPUM_2298___nadD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03816___nadD
# 2: BPUM_2298___nadD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 594
# Identity:     404/594 (68.0%)
# Similarity:   404/594 (68.0%)
# Gaps:          48/594 ( 8.1%)
# Score: 1238.0
# 
#
#=======================================

BSNT_03816___      1 ATGAAGAAAATCGGAATTTTCGGAGGCACGTTTGACCCTCCGCATAATGG     50
                     |||||.|||||.|||.|.|||||.||.||.|||||.|||||.||||||||
BPUM_2298___n      1 ATGAAAAAAATAGGATTGTTCGGCGGTACATTTGATCCTCCTCATAATGG     50

BSNT_03816___     51 TCACCTCTTAATGGCGAATGAGGTGCTGTACCAGGCGGGGCTTGATGAAA    100
                     .||..|..|.|||||.||||||||||..|..||.|..|||||||||||||
BPUM_2298___n     51 GCATTTGCTGATGGCAAATGAGGTGCGTTTTCAAGTAGGGCTTGATGAAA    100

BSNT_03816___    101 TTTGGTTTATGCCTAATCAAATTCCGCCGCAT-AAACAGAAC-GAAGACT    148
                     ||||||||||.||||||||.|..||.||.||| |||||||.| ||||   
BPUM_2298___n    101 TTTGGTTTATTCCTAATCACAAGCCCCCTCATAAAACAGACCGGAAG---    147

BSNT_03816___    149 ATACCGA-CAGCT----TTCATCGCGTGGAAATGCT-AAAGCTTGCAATT    192
                         ||| |||.|    .|||.||.|||.|||||.| .|||| .||.|||
BPUM_2298___n    148 ----CGAGCAGATAGTCGTCACCGGGTGAAAATGGTGGAAGC-AGCGATT    192

BSNT_03816___    193 CAATCTAATCCGTCCTTTAAGCTGGAGCTTGTTGAAATGGAAAGAGAAGG    242
                     .|.||.|||||....|||..|||||||||..||||||||||..|.||.||
BPUM_2298___n    193 GAGTCAAATCCACATTTTCGGCTGGAGCTCATTGAAATGGAGCGGGAGGG    242

BSNT_03816___    243 ACCGTCATATACCTTTGATACCGT--TTCTTTACTGAAGCAGCGTTATCC    290
                     .||.||.|||||..|.|||||.||  ..||||  |.|||.|||||.||||
BPUM_2298___n    243 TCCATCTTATACAGTAGATACGGTGGAGCTTT--TAAAGAAGCGTCATCC    290

BSNT_03816___    291 AAATGATCAGCTGTTCTTTATTATCGGCGCTGATATGATTGAATATTTGC    340
                     ..|.|||.||.|.||.|||||.||.||.||.||.|||.|.||.|||||||
BPUM_2298___n    291 TGAAGATGAGTTCTTTTTTATGATTGGAGCGGACATGGTCGAGTATTTGC    340

BSNT_03816___    341 CGAAATGGTATAAGCTGGACGAGCTGCTGAACCTCATTCAATTTATTGGA    390
                     |.||||||.||..|.|.||.||..||||..|..|.|||...||||||||.
BPUM_2298___n    341 CAAAATGGCATCGGATTGATGATTTGCTTCAGATGATTACTTTTATTGGG    390

BSNT_03816___    391 GTAAAGCGCCCCGGTTTTCATGTTGAA--ACCCCTTATCCGCTTCTCTTT    438
                     .|.||..|.||.||||.|...|  |||  ||..|.|||.|.|||.|.|||
BPUM_2298___n    391 ATGAAAAGACCGGGTTATACCG--GAAGTACGACATATTCTCTTTTGTTT    438

BSNT_03816___    439 GCAGACGTTCCGGAATTTGAGGTATCATCAACTATGATAAGGGAACGGTT    488
                     |||||.|||||.|..|||||.||||||||.||..||||.|||.|.||   
BPUM_2298___n    439 GCAGATGTTCCAGCTTTTGATGTATCATCGACATTGATTAGGCAGCG---    485

BSNT_03816___    489 TAA--AAGCA--AGAAGCCCACTGACTACTTAATCCCTGAT----AAAG-    529
                      ||  |.|||  |.||||   |||.|.| |||.|   ||.|    |||| 
BPUM_2298___n    486 -AATCATGCAGGAAAAGC---CTGTCGA-TTATT---TGTTGCCGAAAGC    527

BSNT_03816___    530 ---TGAAGAAGTATGTAGAGGAGAATGGTTTATATGAATCGTGA    570
                        || ||...|||.||.|||||.||...|||||||||||||||
BPUM_2298___n    528 TGTTG-AGCGTTATATAAAGGAGCATCACTTATATGAATCGTGA    570


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