Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03819 and BPUM_2301
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_03819___yqeH.1.24716.seq
# -bsequence dna-align/BPUM_2301___yqeH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03819___yqeH-BPUM_2301___yqeH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03819___yqeH-BPUM_2301___yqeH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03819___yqeH
# 2: BPUM_2301___yqeH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1122
# Identity: 814/1122 (72.5%)
# Similarity: 814/1122 (72.5%)
# Gaps: 42/1122 ( 3.7%)
# Score: 2861.5
#
#
#=======================================
BSNT_03819___ 1 ATGGAAAAGGTTGTTTGTATCGGGTGCGGAGTTACGATCCAAACCGAGGA 50
||||||||||||||||||||.||.|||||.||..|.||.||.||.||.||
BPUM_2301___y 1 ATGGAAAAGGTTGTTTGTATTGGCTGCGGTGTAGCCATTCAGACGGAAGA 50
BSNT_03819___ 51 CAAAACAGGT---TTGGGGTACGCGCCGCCTGCATCGCTTACGAAAGAAA 97
.|| ||.| ||.||.||.||||||.|.|||||.||.|.|||||||.
BPUM_2301___y 51 TAA---AGATCAATTAGGATATGCGCCGGCAGCATCTCTAATGAAAGAAG 97
BSNT_03819___ 98 ATGTGATTTGCCAGCGTTGCTTCAGACTGAAAAACTATAATGAAATACAA 147
||||.||.||.|||||.||.||.||..|.||.|||||.||||||||||||
BPUM_2301___y 98 ATGTAATCTGTCAGCGCTGTTTTAGGTTAAAGAACTACAATGAAATACAA 147
BSNT_03819___ 148 GATGTCTCCTTAACTGATGATGATTTTTTGAACATTCTTCACGGTATTGG 197
|||||.||.|||||.||.||.||.|||||.||.||..|.|||.|.||.||
BPUM_2301___y 148 GATGTTTCTTTAACAGAAGACGACTTTTTAAATATATTGCACAGCATCGG 197
BSNT_03819___ 198 AGAAACGGACTCTCTTGTCGTAAAAATTGTTGATATTTTTGATTTTAACG 247
|||.||.||.|||||..|.||.||..|.||||||||||||||.|||||||
BPUM_2301___y 198 AGAGACAGATTCTCTGATTGTCAAGGTCGTTGATATTTTTGACTTTAACG 247
BSNT_03819___ 248 GCAGCTGGATTAATGGGCTGCAG-CGCTTGGTGGGGGGAAACCCTATCTT 296
|.|||||||||||||||||| || ||..|.||.||.||.|||||.||.||
BPUM_2301___y 248 GAAGCTGGATTAATGGGCTG-AGTCGTATTGTCGGTGGTAACCCGATTTT 296
BSNT_03819___ 297 ATTAGTTGGCAATAAAGCGGATATTTTGCCTAAGTCACTGAAAAGAGAGC 346
|.|.||.|||||.||||..||||||||.||.||.||..||||||.|||.|
BPUM_2301___y 297 ACTTGTCGGCAACAAAGTAGATATTTTACCGAAATCCGTGAAAAAAGATC 346
BSNT_03819___ 347 GTCTGATCCAATGGATGAAGCGTGAAGCGAAAGAGCTTGGCTTAAAACCG 396
||.||.|.||.||||||||.||.|||||||||||....||.||.||.|||
BPUM_2301___y 347 GTTTGGTTCATTGGATGAAACGGGAAGCGAAAGAAAACGGATTGAACCCG 396
BSNT_03819___ 397 GTTGACGTATTTTTGGTCAGTGCGGGACGCGGCCAGGGAATAAGAGAAGT 446
.|.|..||.||.||..|||||||..|..|.||.||.||..||...||.||
BPUM_2301___y 397 ATCGCTGTGTTCTTAATCAGTGCAAGCAGAGGTCAAGGCGTACCTGAGGT 446
BSNT_03819___ 447 AATTGACGCGATTGAGCATTACCGCAACGGAAAAGACGTCTATGTTGTCG 496
.||.||.|||||.||.|||||||||.|.||||.|.|.||||||||.||||
BPUM_2301___y 447 GATGGAAGCGATCGATCATTACCGCGAAGGAAGAAATGTCTATGTCGTCG 496
BSNT_03819___ 497 GATGTACAAATGTAGGAAAGTCAACCTTTATTAACCGGATTATTAAAGAA 546
|.|||||.|||||.||.||.||.||.|||||.||.||.||.||.||||||
BPUM_2301___y 497 GCTGTACGAATGTTGGGAAATCCACATTTATCAATCGAATCATCAAAGAA 546
BSNT_03819___ 547 GTGTCAGGTGAAGAAGATATTATTACAACATCCCAATTTCCTGGCACAAC 596
||.||.||.|||||..|..|.||.||.||||||||.|.|||.||.|||||
BPUM_2301___y 547 GTATCTGGCGAAGAGAACGTGATCACCACATCCCAGTATCCAGGTACAAC 596
BSNT_03819___ 597 CCTTGATGCGATTGAAATCCCGCTGGATGACGGTTCATCGCTTTATGATA 646
.||||||||.|||||.||.|||||.||||||||.||..|.||.|.|||||
BPUM_2301___y 597 ACTTGATGCCATTGAGATTCCGCTTGATGACGGATCTGCTCTATTTGATA 646
BSNT_03819___ 647 CACCGGGAATTATCAACAACCATCAAATGGCGCATTATGTCAATAAAAAG 696
|||||||.|||||||||...|||||.||||||||.|||||||..|||||.
BPUM_2301___y 647 CACCGGGCATTATCAACCGTCATCAGATGGCGCACTATGTCAGCAAAAAT 696
BSNT_03819___ 697 GATCTGAAAATATTATCTCCTAAAAAGGAGCTGAAGCCTCGCACATTCCA 746
||..||||.||.|||.|.||.|||||.||..|.||.||..|.||.|||||
BPUM_2301___y 697 GACTTGAAGATCTTAACGCCGAAAAAAGAATTAAAACCGAGAACGTTCCA 746
BSNT_03819___ 747 GCTTAATGATCAG--CAAACACTGTATTTTGGCGGACTTGCAAGGTTTGA 794
..|.||.|| || |||||.||.|||||||||||.|||||..|.|||||
BPUM_2301___y 747 ATTAAACGA--AGCACAAACGCTCTATTTTGGCGGGCTTGCTCGATTTGA 794
BSNT_03819___ 795 TTATGTGTCTGGGGAAAGATCTCCTTTTATTTGCTATATGCCGAATGAGC 844
||||||....||.|..|||.|..|.|||.|.|||||||||||.|||||||
BPUM_2301___y 795 TTATGTAAAAGGCGGCAGAACATCATTTGTCTGCTATATGCCAAATGAGC 844
BSNT_03819___ 845 TGATGATTCATAGAACAAAACTTGAAAATGCAGACGCGCTTTATGAAAAG 894
|||..||.||.||||||||..|.|||||.|||||.|...|.||||||||.
BPUM_2301___y 845 TGAACATACACAGAACAAAGTTAGAAAACGCAGATGATTTATATGAAAAA 894
BSNT_03819___ 895 CATGCAGGGGAATTGCTCACACCTCCGGGTAAAGATGAAATGGATGAGTT 944
|||||||||||||||||..||||.||....|||||.|..|||||.||.||
BPUM_2301___y 895 CATGCAGGGGAATTGCTATCACCACCATCAAAAGAGGGGATGGAAGATTT 944
BSNT_03819___ 945 TCCGGAATTGGTCGCCCATACGTTTAC----GATAAAAGAC-AAAAAGAC 989
|||...|.|.||..|.|||||.||||| ||| .||.| ||||.|
BPUM_2301___y 945 TCCACCACTCGTTCCGCATACCTTTACCTTTGAT--CAGCCGAAAATG-- 990
BSNT_03819___ 990 AGATATCGTTTTCTCTGGGTTAGGCTGGGTTACTGTCCATGACGCCGATA 1039
||||||||||||||.||.|||||.|||.|.||.|...||||.||
BPUM_2301___y 991 -GATATCGTTTTCTCAGGCTTAGGATGGATCACGGCAAATGATGC----- 1034
BSNT_03819___ 1040 AAAAGGTAACTGCA----------TACGCGCCAAAAGGCGTTCATGTATT 1079
|||||| ||| ||.||||||||||||||.|||||.||
BPUM_2301___y 1035 ---AGGTAA--GCAAATCAAAGTCTATGCGCCAAAAGGCGTGCATGTGTT 1079
BSNT_03819___ 1080 TGTTCGGCGTTCATTAATTTAA 1101
|.|..|.|||||.|||||||||
BPUM_2301___y 1080 TATGAGACGTTCGTTAATTTAA 1101
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