Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03833 and BPUM_2309
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_03833.1.24716.seq
# -bsequence dna-align/BPUM_2309___spoIIIC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03833-BPUM_2309___spoIIIC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03833-BPUM_2309___spoIIIC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03833
# 2: BPUM_2309___spoIIIC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity: 585/875 (66.9%)
# Similarity: 585/875 (66.9%)
# Gaps: 151/875 (17.3%)
# Score: 2297.5
#
#
#=======================================
BSNT_03833 0 -------------------------------------------------- 0
BPUM_2309___s 1 ATGAAAAGGGCAGCAAAAACAGACGAACTGAAGCCCGTTTTTTTCGAAAA 50
BSNT_03833 0 -------------------------------------------------- 0
BPUM_2309___s 51 AGATGATTTTTTCATCGTACAGACACAGACAATCCCCCCTTCACATACAT 100
BSNT_03833 1 -----------------------------------------ATGGTGACA 9
||.|||.||
BPUM_2309___s 101 TTGAGGATATAGGCAGTGGCCTAAACATGGTGGAGGTGAAAATCGTGGCA 150
BSNT_03833 10 GGTGTTTTCGCAGCGCTCGGCTTTGTTGTTAAAGAGCTTGTCTTTTTAGT 59
||.||.||..|||||.|.||.||..|.||.|||||..|.||.||.|||||
BPUM_2309___s 151 GGAGTATTTACAGCGATGGGATTGATGGTCAAAGAATTGGTGTTCTTAGT 200
BSNT_03833 60 ATCTTACGTGAAAAACAATGCCTTTCCACAACCGCTCTCAAGCAG-CGAA 108
.||.||.||.||||||||||||||||||||.||.||.|| .|.|| .||.
BPUM_2309___s 201 GTCCTATGTCAAAAACAATGCCTTTCCACAGCCCCTTTC-GGGAGATGAT 249
BSNT_03833 109 GAAAAAAAATACTTAGAGCTCATGGCTAAAGGG-GATGAACATGCCAGAA 157
||||||||||||||||..||.||||| |.|||| ||||||||.||.||||
BPUM_2309___s 250 GAAAAAAAATACTTAGCCCTTATGGC-ACAGGGCGATGAACACGCGAGAA 298
BSNT_03833 158 ACATGCTGATTGAGCATAATCTTCGCTTGGTCGCCCATATTGTGAAAAAG 207
|.|||||||||||.|||||.|||||..|.||||||||||||||.||.||.
BPUM_2309___s 299 ATATGCTGATTGAACATAACCTTCGGCTCGTCGCCCATATTGTCAAGAAA 348
BSNT_03833 208 TTCGAAAATACAGGTGAGGATGCAGAGGACTTAATCTCCATCGGAACGAT 257
||.||||||||.||.||.||.|||||.|||.|.|||||||||||.|||||
BPUM_2309___s 349 TTTGAAAATACCGGGGAAGACGCAGAAGACCTCATCTCCATCGGGACGAT 398
BSNT_03833 258 CGGGTTGATAAAAGGAATTGAAAGCTATTCCGCTGGTAAAGGGACAAAGC 307
|||..|.||.||||..||.||||||||||||.||||.|||||.|||||||
BPUM_2309___s 399 CGGACTCATTAAAGCCATCGAAAGCTATTCCTCTGGAAAAGGAACAAAGC 448
BSNT_03833 308 TGGCGACGTATGCTGCGAGGTGTATTGAAAATGAAATCCTCATGCATTTG 357
||||.||||||||||||.||||||||||||||||||||||.||||||||.
BPUM_2309___s 449 TGGCAACGTATGCTGCGCGGTGTATTGAAAATGAAATCCTGATGCATTTA 498
BSNT_03833 358 CGCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGG 407
|||||..|.|||||.|||||||||||.||||||.|.||.||.||.||.||
BPUM_2309___s 499 CGCGCGCTCAAAAAGACAAAAAAAGATGTCTCCTTGCATGACCCCATTGG 548
BSNT_03833 408 GCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAG 457
.||||||||.|||||.||.|||||.....|.|||||.||.||.|||||.|
BPUM_2309___s 549 TCAGGATAAAGAAGGCAACGAAATTTCATTAATTGATGTCTTAAAATCCG 598
BSNT_03833 458 AAAACGAAGACGTGATAGATACGATCCAGCTCAATATGGAGCTTGAAAAA 507
||||.|||||.|||||.||||||||.||||||||.|||||||||||||||
BPUM_2309___s 599 AAAATGAAGATGTGATTGATACGATTCAGCTCAACATGGAGCTTGAAAAA 648
BSNT_03833 508 GTGAAACAATACATTGACATTTTAGATGACCGTGAGAAGGAAGTGATTGT 557
||.||..|.||.||.||||||.|.||.|.|||.||.||.||||||||.||
BPUM_2309___s 649 GTAAAGGAGTATATCGACATTCTCGACGGCCGGGAAAAAGAAGTGATCGT 698
BSNT_03833 558 CGGTCGGTTTGGACTTGATTTGAAGAAGGAAAAAACGCAGCGAGAGATTG 607
|||.|||||.||.||||||||.|||||.||||||||||||||.||.||.|
BPUM_2309___s 699 CGGCCGGTTCGGTCTTGATTTAAAGAAAGAAAAAACGCAGCGGGAAATAG 748
BSNT_03833 608 CCAAAGAACTCGGTATCTCGCGCAGCTATGTATCGCGGATTGAAAAGCGG 657
||||.||.|||||.||.|||||.||||||||.||.||.|||||.|||||.
BPUM_2309___s 749 CCAAGGAGCTCGGGATATCGCGGAGCTATGTGTCACGTATTGAGAAGCGA 798
BSNT_03833 658 GCGTTGATGAAGATGTTTCATGAGTTTTATCGGGCAGAGA---AGGAAAA 704
|||.||||||||||||||||||||||||..|||||.|||| ||||||
BPUM_2309___s 799 GCGCTGATGAAGATGTTTCATGAGTTTTCCCGGGCGGAGAAAGAGGAAA- 847
BSNT_03833 705 GCGGAAGAAGGCGAAGGGGAAATAA 729
||||.|..||.||| |||||.|.|
BPUM_2309___s 848 -CGGAGGCGGGAGAA-GGGAAGTGA 870
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