Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04202 and BPUM_2327
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_04202___araA.1.24716.seq
# -bsequence dna-align/BPUM_2327___araA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04202___araA-BPUM_2327___araA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04202___araA-BPUM_2327___araA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04202___araA
# 2: BPUM_2327___araA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1678
# Identity: 939/1678 (56.0%)
# Similarity: 939/1678 (56.0%)
# Gaps: 443/1678 (26.4%)
# Score: 2311.0
#
#
#=======================================
BSNT_04202___ 1 ATGCTTCAGACAA---AGGATTATGAATTCTGGTTT-GTGACAGGAAGCC 46
|||.| .|||| |..||.|.||||.||||||| .||.| |||...|
BPUM_2327___a 1 ATGTT---AACAAGTCAACATAAAGAATGCTGGTTTATTGTC-GGATCAC 46
BSNT_04202___ 47 AGCACCTATACGGGGAAGA-GACGCTGGAACTCGTAGATCAGCATGCTAA 95
||||..||||||| ||| ||.|| ||| .|||.|.| |||
BPUM_2327___a 47 AGCATTTATACGG---AGATGAAGC----ACT------ACAGAAAG-TAA 82
BSNT_04202___ 96 AAGCATTTG---------TGAGGG--GC------TCAGCG-GGATTTCTT 127
|||||..|| |||.|| || |.||.| ||.||.|||
BPUM_2327___a 83 AAGCAGATGCACAAAAAATGACGGATGCCTTAAATGAGAGCGGTTTACTT 132
BSNT_04202___ 128 CCAGATATAAA---ATCACTCATAAGC---CCGTC-------GTCACTTC 164
|| .|||..| |||...||..||| |.||| .|||..||
BPUM_2327___a 133 CC--TTATCCAGTGATCTTGCAGGAGCTAGCTGTCAGCGCAGATCAAATC 180
BSNT_04202___ 165 ACCGGAAACC--ATTAGAGAGCTGTTAA-----GAGAAGCGGAGTACAGT 207
|| |||.| ||.|.|||| ||||| |.|| |
BPUM_2327___a 181 AC---AAAGCTGATGAAAGAG--GTTAATTATCGCGA------------T 213
BSNT_04202___ 208 GAGACATG-TGCTGGCATCATTACATGGATGCACACATTTTCCCCTGCAA 256
||| | ||..|||.||||.||.||||||||.||||||||.||.||||
BPUM_2327___a 214 GAG----GTTGTCGGCGTCATGACGTGGATGCATACATTTTCACCGGCAA 259
BSNT_04202___ 257 AAATGTGGATA-----GAAGGCCTTTCC--TCTTAT-CAAAAACCGCTTA 298
||||||||||| || || ||||.| ||.||.||.|||.
BPUM_2327___a 260 AAATGTGGATACGCGGGA--------CCAATCTTTTGCAGAAGCCTCTTT 301
BSNT_04202___ 299 TGCAT-TTGCAT-ACCCAATATAATCGCGATATCCCGTGGGGTACGATTG 346
|.||| ||| | ||.||.|||.||....|.||.|||||||..|||||.|
BPUM_2327___a 302 TACATCTTG--TCACACAGTATTATGAAAAAATTCCGTGGGACACGATCG 349
BSNT_04202___ 347 ACATGGATTTTATGAA-CAGCAACCAATCCGCGCATGGCGATCGAGAGTA 395
|||||||.|.|||||| |..| |.|||||.||.|||||.||..||||.||
BPUM_2327___a 350 ACATGGACTATATGAATCTTC-ATCAATCGGCACATGGAGACAGAGAATA 398
BSNT_04202___ 396 CGGTTACATCAA--CTCGAGAATGGGGCTTAGCCGA------AAAGTCA- 436
.||.||.||||| |.||| ||| | |||.|||
BPUM_2327___a 399 TGGCTATATCAATGCACGA---------TTA----AATAAACAAAATCAA 435
BSNT_04202___ 437 ----TTGCCGGCTATTGGGATGATGAA----GAAGTGAAAAAAGAAATGT 478
||||.||..|.|||..| || ||.|||.|..|..||||..
BPUM_2327___a 436 ATTGTTGCAGGGCACTGGTCT----AAGCCGGAGGTGCAGCAGCAAATCG 481
BSNT_04202___ 479 CCCAGTGGATGGATACGGCGGCTGCATTAAATGAAAGCAGACATATTAAG 528
|..|.|||||||||..|||.||.||.|...||||||||...||.|||||.
BPUM_2327___a 482 CTGATTGGATGGATGTGGCAGCCGCCTATCATGAAAGCTTTCAGATTAAA 531
BSNT_04202___ 529 GTTGCCAGATTTGGAGATAACATGCGTCATGTAGCGGTAACGGACGGAGA 578
||.||.||.|||||.||.||||||||.|||||.||.||.||.||.|||||
BPUM_2327___a 532 GTGGCAAGGTTTGGTGACAACATGCGCCATGTGGCTGTCACAGAAGGAGA 581
BSNT_04202___ 579 CAAGGTGGGAGCGCATATTCAATTTGGCTGGCAGGTTGACGGATATGGCA 628
.||..|.|.|||.||.|||||.||.||.|||...|||||....|.|||.|
BPUM_2327___a 582 TAAAATCGAAGCCCAGATTCAGTTAGGGTGGACCGTTGATTACTTTGGGA 631
BSNT_04202___ 629 TCGGGGATCTCGTTGAA---GTGATGGATCGCATTACGGACGA---CGAG 672
|.||.||||||||.||| |||| || |||.|| ||.|| .|||
BPUM_2327___a 632 TAGGCGATCTCGTCGAATATGTGA---AT-GCAGTA--GAAGAAGCAGAG 675
BSNT_04202___ 673 GTTGACACGCTTTA--TGCCG------------AGTATGA--CAGACTAT 706
|| |.|.||.||| |||.| ||||||| .|||.|||
BPUM_2327___a 676 GT--AGATGCATTATTTGCGGAGTATTTATTGCAGTATGATGTAGAGTAT 723
BSNT_04202___ 707 ---ATGTGATCAGT----GA---GGAAACAAAACGTGACGAAGCAAAGGT 746
|.||..||||| || ||| ||||.|||.| |||||
BPUM_2327___a 724 GGAACGTATTCAGTTGAAGATTGGGA---AAAAAGTGTC------AAGGT 764
BSNT_04202___ 747 AGCGTCCATTAAAGAACAGGCGAAAAT-TGAGCTTGGCTT--AACCGCTT 793
|| |||.||.| | ||||.|||.|.| || |||||
BPUM_2327___a 765 -GC--------AAGCACGG-------TATGAGATTGCCATCCAA-CGCTT 797
BSNT_04202___ 794 TTCTTGAGCAAGGCGGATACACAGCGTTTACGAC-ATCGTTTGAAGTGCT 842
|| |.||..|||||||.||||..||.|||||||| |.| |||||||...|
BPUM_2327___a 798 TT-TAGATGAAGGCGGCTACAATGCTTTTACGACGAAC-TTTGAAGATTT 845
BSNT_04202___ 843 GCACGGAATGAAACAGCTGCCGGGACTTGCTGTTCAGCGCCTTATGGAGA 892
.||.||||||||.||.|||||.||||||||.||.|||||.||.||||..|
BPUM_2327___a 846 ACATGGAATGAAGCAACTGCCAGGACTTGCGGTACAGCGGCTGATGGCAA 895
BSNT_04202___ 893 AAGGCTACGGGTTTGCCGGTGAAGGAGATTGGAAGACAGCGGCCCTTGTA 942
|.||.||.||.||||||||.|||||.||||||||.||.||.||.| ||.|
BPUM_2327___a 896 AGGGATATGGCTTTGCCGGGGAAGGCGATTGGAAAACGGCTGCGC-TGGA 944
BSNT_04202___ 943 CGGATGATGAAA-----------ATCATGGCTAAAGGAAAAAGAACTTCC 981
|.|||.||.||| ||||| .||...|||...
BPUM_2327___a 945 CCGATTATTAAAGGTGATGAGTCATCAT----------CAATCCACTGGT 984
BSNT_04202___ 982 TTCATGGAAGATTACACGTACCATTTTGAACCGGGAAATGAAATGA-TTC 1030
||.|||||.||.||.|||| ||||||||| .||
BPUM_2327___a 985 TTTATGGAGGACTATACGT------------------ATGAAATGACGTC 1016
BSNT_04202___ 1031 TGGGC-----------------TCTCACATGCTTGAAGTGTGTCCGACTG 1063
|||.| |||||.|||.|.|||||...||| |
BPUM_2327___a 1017 TGGACAGGAAGCAGTGCTGCAATCTCATATGTTAGAAGTAGATCC----G 1062
BSNT_04202___ 1064 TCGCTTTGGATCAGCCGAAA------ATCGAGGT-TCATCCGCTTTCGAT 1106
.||||| |..||..||||| ||.|..|| || |||||||...||
BPUM_2327___a 1063 GCGCTT--GCCCATACGAAACCTGTCATTGTCGTATC-TCCGCTTGGAAT 1109
BSNT_04202___ 1107 TGGCGGCAAGGAGGACCCTGCGCGTTTTGTATTTAACGGCATCAGC---- 1152
.||...||.|||.||.||.||.||..||||.|||.|.|| |..|||
BPUM_2327___a 1110 CGGAAACAGGGAAGATCCAGCTCGCCTTGTGTTTGATGG-AAAAGCTGGG 1158
BSNT_04202___ 1153 ---GGTTCTGCCATTCAAGCTAGCATTGTTGATATTGGCGGGCGTTTC-- 1197
|||..||.|.|| .|| ||||.||||.||||....|.||||
BPUM_2327___a 1159 GAAGGTGTTGTCGTT---TCT---ATTGCTGATTTTGGTACTCATTTCAA 1202
BSNT_04202___ 1198 -CGCCTTGTGC-TGAA--TGAAGTC-----ACCGGTCAGGAAATTGAAAA 1238
.|.|||.|.| .||| |||||.| .|||| |||||...|.|
BPUM_2327___a 1203 ATGGCTTATACAAGAAGTTGAAGCCTTTGAGCCGG--AGGAAGCAGCA-- 1248
BSNT_04202___ 1239 AGACATGCCGAATTTACCGGTTGCCCGTGTTCTCTGG------AAGCCGG 1282
||..||||||||||.||.|||||.|||||| ||||||.
BPUM_2327___a 1249 -------CCTCATTTACCGGTGGCACGTGTGCTCTGGAAAATCAAGCCGA 1291
BSNT_04202___ 1283 A----------GCCGTCATTGAAAACAGCAGCGGAGGCATGGATTTTAGC 1322
| |.||||| |.||||||| ||.|||
BPUM_2327___a 1292 ATTTTCAGGACGGCGTCA----------------AAGCATGGA-TTAAGC 1324
BSNT_04202___ 1323 -CGGCGGTGCACATCATACCTGCCTGTCTTATGAACTGACAGCGGAGCAA 1371
.|||||.|..||||||| |.|||.||| ..|| |||
BPUM_2327___a 1325 AAGGCGGGGGTCATCATA-----CAGTCGTAT-CCCT----------CAA 1358
BSNT_04202___ 1372 ATGCTTGATTGGGCGGAAATGGCGG-GGATCGAAAGTGTTCTCATTT--- 1417
||.|| ||| .|||| |||.||| ||||||
BPUM_2327___a 1359 ----TTTAT-------------CGGTTGATC-AAATTGT--TCATTTTGC 1388
BSNT_04202___ 1418 ----CCCGTGATACGACAATTCATAAACTGAAACACGAGTTAAAATGGAA 1463
|..||| |.||.| |||| ||
BPUM_2327___a 1389 AAAGCTTGTG----------------AGTGCA----GAGT----AT---- 1410
BSNT_04202___ 1464 CGAGGCGCTTTACCGGCTTCAAAAGTAG 1491
|.||.|||| |||
BPUM_2327___a 1411 ---GTCGTTTTA-------------TAG 1422
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