Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04200 and BPUM_2328

See Amino acid alignment / Visit BSNT_04200 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:43
# Commandline: needle
#    -asequence dna-align/BSNT_04200___araD.1.24716.seq
#    -bsequence dna-align/BPUM_2328___araD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04200___araD-BPUM_2328___araD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04200___araD-BPUM_2328___araD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04200___araD
# 2: BPUM_2328___araD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 791
# Identity:     452/791 (57.1%)
# Similarity:   452/791 (57.1%)
# Gaps:         187/791 (23.6%)
# Score: 1066.0
# 
#
#=======================================

BSNT_04200___      1 ATGCTTGAAACATTAAAAAAAGAAGTGCTGGCTGCCAACCTGAAGCTTCA     50
                     |||||.|||...||||||.|||||||..|.|..|||||  |..||.||.|
BPUM_2328___a      1 ATGCTAGAACGCTTAAAAGAAGAAGTATTCGAAGCCAA--TTTAGATTTA     48

BSNT_04200___     51 -AGAGCATCAG------CTGGTAACCTTTACGTGGGGAAATGTCAGCGGC     93
                      .||     ||      ||.||.|..||.||.|||||.|||||||| .||
BPUM_2328___a     49 CCGA-----AGTACGGACTTGTGAAATTCACATGGGGCAATGTCAG-TGC     92

BSNT_04200___     94 AT-TGACCGTGAAAAAGAAAGAATTGTCATCAAACCTAGCGGAGTCGAAT    142
                     .| |||.|||||.|..|....|.||||.||.||.||||||||       |
BPUM_2328___a     93 GTGTGATCGTGACAGCGGTCTATTTGTTATTAAGCCTAGCGG-------T    135

BSNT_04200___    143 ACAGC----GACC--TTA-CAGCAGATGACTTGGTTGTTTTGAACCTTGA    185
                     |.|||    ||.|  ||| ||||..|.||..|||||||..|..||.||||
BPUM_2328___a    136 ATAGCGTATGATCAATTATCAGCGAAAGATATGGTTGTAGTCGACTTTGA    185

BSNT_04200___    186 TGGAGAGGTCGTCGAAGGCTCGCTTA-AG-CCTTCTTCAGATACACCTAC    233
                     .||.||.||.||.|||||  .|..|| || |||||.|||||||||.|.||
BPUM_2328___a    186 CGGTGAAGTAGTGGAAGG--GGAATACAGCCCTTCATCAGATACAGCAAC    233

BSNT_04200___    234 CCATGTTTATCTATATAAAGCCTTTCCGA--ATATCGGGGGAATTGTC-C    280
                     .||.|.|...||.||.|||..||||  ||  |.|||||.||.||| || |
BPUM_2328___a    234 ACACGCTGTCCTTTACAAACACTTT--GATGAAATCGGCGGTATT-TCAC    280

BSNT_04200___    281 ATACCCATTCCCAATGGGCGACAAGCTGGGCGCAATCGGGCAGAGACATC    330
                     |||.|||||||...|||||.||....||||||||    |||||      .
BPUM_2328___a    281 ATAGCCATTCCATGTGGGCAACCGTTTGGGCGCA----GGCAG------G    320

BSNT_04200___    331 CCTCCGTT---AGGC-------ACGACCCATGCTGAT-TATTTTGACAGT    369
                     .|||..||   ||||       ||.||.||||||||| .||||| ||.||
BPUM_2328___a    321 TCTCGATTTACAGGCAATGGGTACAACACATGCTGATACATTTT-ACGGT    369

BSNT_04200___    370 GCGATTCCATGTACTCGA-----GAAATGTATGATGAAGAAATCATTC--    412
                     ||..||||||||.|||||     ||.|     ||.||||||.|||.||  
BPUM_2328___a    370 GCTGTTCCATGTGCTCGATTTCTGACA-----GAAGAAGAAGTCAATCGC    414

BSNT_04200___    413 ----ATGA-CTACGAAC--------TGAATACAGGAAAAGTCATAGCGGA    449
                         |||| .||..|||        |||            ||||   .||
BPUM_2328___a    415 GGTTATGAGGTAGAAACGGGCCGGTTGA------------TCAT---CGA    449

BSNT_04200___    450 AACCTTTCAGCATCATAACTACGAA---------------CAGGTGCCGG    484
                     |||.|||.||.|        |.|||               || |||||.|
BPUM_2328___a    450 AACGTTTGAGAA--------AAGAAATCTAGATGTGATGGCA-GTGCCAG    490

BSNT_04200___    485 GTG---TGCTCGTGAATAATCACGGACCGTTCTGC-TGGGGCACTGACGC    530
                     |||   ||||  |.|| ...|||||.||.|| |.| |||||.|..||.||
BPUM_2328___a    491 GTGTATTGCT--TCAA-GGCCACGGCCCATT-TACGTGGGGGAAAGATGC    536

BSNT_04200___    531 CTTAAATGCCATTCATAACGCAGT-TG-TATTAGAAACGGTTGCCGAAAT    578
                     ...||.|| |..|||.|| .|||| || |.||||||...||.|||.||||
BPUM_2328___a    537 AAAAAGTG-CGGTCACAA-ACAGTGTGATTTTAGAAGAAGTCGCCAAAAT    584

BSNT_04200___    579 GGCCTATCACTCTATTATGCTGAACAAGGATGTAACCCCAATCAATAC--    626
                     |       |.|.|||| .||..|.|||..|         |||.|||||  
BPUM_2328___a    585 G-------AATTTATT-CGCAAAGCAATTA---------AATGAATACGC    617

BSNT_04200___    627 --AGTCCT-----GCA---------TGAAAAGCATT--TTTATCGAAAAC    658
                       || |||     |||         .||.||.||||  ||.|  ||||||
BPUM_2328___a    618 GGAG-CCTCTTCCGCAGCGAATTTTAGATAAACATTACTTAA--GAAAAC    664

BSNT_04200___    659 ACGGAGCAAATGCGTATTATGGCCA------GTCATGA---    690
                     |.||.|.|.||||||||||.||.||      .|||..|   
BPUM_2328___a    665 ATGGCGAACATGCGTATTACGGACAAAAACCTTCAACATAA    705


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