Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05138 and BPUM_2330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:48
# Commandline: needle
# -asequence dna-align/BSNT_05138___araR.1.24716.seq
# -bsequence dna-align/BPUM_2330.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05138___araR-BPUM_2330.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05138___araR-BPUM_2330.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05138___araR
# 2: BPUM_2330
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1273
# Identity: 680/1273 (53.4%)
# Similarity: 680/1273 (53.4%)
# Gaps: 356/1273 (28.0%)
# Score: 1518.0
#
#
#=======================================
BSNT_05138___ 1 ATGTTACCAAAATACGCGCAAGTAAAAGAAG----AAATCAGTTCATGGA 46
|.|.|||||||| |.|||| |.||.||
BPUM_2330 1 -------------------ATGAAAAAGAAGTACCAGATCA--TTATCGA 29
BSNT_05138___ 47 T----TAATCAAGGCAAAATACTGCCCGAT-CAAAAAATCCCTACCGAA- 90
| ||| ||.|||||||||| | ||..|.|| |||||.|
BPUM_2330 30 TGATATAA--AAAGCAAAATACT------TACAGGAGAT---TACCGGAT 68
BSNT_05138___ 91 -----AACGAATT---AATGCAGCAATTCGGC--------------GTCA 118
||||.||| |.||.|.|||..|.|| ||.|
BPUM_2330 69 CGGGGAACGTATTCCAACTGAATCAAGCCTGCAAGAGATGTATCAAGTGA 118
BSNT_05138___ 119 GCCGGCATACCATCCGCAAAGCGATCGGAGACCT------CGTATCACAA 162
||.|||||||..|.||.||.||.|||..|||..| || ||
BPUM_2330 119 GCAGGCATACGGTTCGAAAGGCCATCTTAGAATTGTCGAGCG------AA 162
BSNT_05138___ 163 GGTCTGCTGTACAGCGTGCAAGGCGGAGGCACCTTTGT--CGCTTCACGC 210
|||.|..||...||.|.|.||||...||||||.||||| |...|||...
BPUM_2330 163 GGTTTTTTGCGAAGTGAGAAAGGTTCAGGCACATTTGTGACCAATCAATA 212
BSNT_05138___ 211 TC-TGCTAAGTCAGCGCTGCATTCCAAT---AAAACGATCGGTGTTTTGA 256
|| ..|.|||.|.|||...|||.|..|| ||||||||.||.||..|.|
BPUM_2330 213 TCAAACAAAGCCTGCGGGACATGCGCATATGAAAACGATTGGCGTGATTA 262
BSNT_05138___ 257 CAACCTACATATCAGACTATATTTTCCCGAGCATCATCAGAGGAATCG-- 304
|.||.||||||||.||.||.||.|||||...|||.||..||||.||.|
BPUM_2330 263 CGACATACATATCCGATTACATATTCCCTTCCATTATTCGAGGCATTGAA 312
BSNT_05138___ 305 AGTCCTATTTAAGCGAGCAGGGGTATTCTATGCTTTTGACAAGCACAAAC 354
|| ||.| ||||.|||..||...|||||..||.|..||.|.||.|||||.
BPUM_2330 313 AG-CCGA-TTAAACGAAGAGAACTATTCGTTGTTACTGGCGAGTACAAAT 360
BSNT_05138___ 355 AA----------CAACCCGGACAACGAAAGAAGAGGCTTAGAAAACCTGC 394
|| || ||| |||| |||..|| |.||||...|||
BPUM_2330 361 AATGATGTAGATCA----GGA----GAAA-AAGGCGC-TCGAAATGATGC 400
BSNT_05138___ 395 TGTCCCAGCATATT-------GACGGACTCATCGTAGAACCGACAAAAAG 437
||||| || |||||||||||.||.||.|||||.|||||
BPUM_2330 401 TGTCC-------TTTGGTGTGGACGGACTCATTGTTGAGCCGACGAAAAG 443
BSNT_05138___ 438 CGCCCTTCAA-------ACCCCAAACATCGGCTATTATCTGAACTTGGAA 480
||| |.||||||||||...||.|| ||.|.|||..||
BPUM_2330 444 -------CAATTTATATAACCCAAACATCTCGTACTA-CTTATCTTTTAA 485
BSNT_05138___ 481 AAAA--------ACGGCATTCCTTTTGCGATGATTAACGCGTCATATGCC 522
|.|| ||.|| ||.|| ||||||||.||.|..|||
BPUM_2330 486 AGAACAGGATGTACCGC--TCATT-----ATGATTAATGCCTATTAT--- 525
BSNT_05138___ 523 GAGCTTGCCGCGCCGAGT----------TTTAC----CTTGGATGATGTG 558
|||| ||| |||.| |||||||||||||
BPUM_2330 526 GAGC-----------AGTTAGAGGTTCCTTTTCTCTGCTTGGATGATGTG 564
BSNT_05138___ 559 AA------------AGGC------GGGATGATGGCGGCGGAGCATTTGCT 590
|| ||.| |.|.||||..|..|||.||||
BPUM_2330 565 AAGTCCAGTTATTTAGCCACAAAAGAGCTGATCACCTCGGGGCAT----- 609
BSNT_05138___ 591 TTCTCTCGGCCACACGCATATGATGGG--TATTTTTAAAGCTGATGACAC 638
|| |||.|| |||| .||||..|||.|.|||||...
BPUM_2330 610 ------------CA-GCAAAT--TGGGCTCATTTCAAAAACAGATGATTT 644
BSNT_05138___ 639 ACAAGGCGTGAAA----CGGATGAACGGATTTATACAGGCGCACCG-GGA 683
||||| |||| ||.|||||.||.|.|||.||.||||.|.| |.|
BPUM_2330 645 ACAAG----GAAAGTACCGAATGAAAGGCTATATTCAAGCGCTCGGTGAA 690
BSNT_05138___ 684 GCG----TGAGTTGTTTCCTTCT-CCGGA-TATGATCGTGACATTTACAA 727
||| |.|.|| |||| ||.|| .||| ||.| |.|||.|
BPUM_2330 691 GCGAAGCTTAATT------TTCTGCCTGAGCATG-TCCT--CTTTTTC-- 729
BSNT_05138___ 728 CGGAAGAAAAAGAATCAAAAC----TTCTGG----AGAAAGTAAAAGCCA 769
||.|.||||||.||.| || ||| .||.|.||||| |.
BPUM_2330 730 -----GATACAGAATCGAAGCAGCATT-TGGGGGATGATATTAAAA--CT 771
BSNT_05138___ 770 CACTGGAGAAA--AACAGCAAGCACATGCCGACAGCCATTCTTTGTTATA 817
..||....||| |.|||||.|.| |.|||.|||.||.||||.||||
BPUM_2330 772 TTCTTATTAAAGCATCAGCATGAA----CTGACTGCCCTTGTTTGCTATA 817
BSNT_05138___ 818 ACGATGAAATTGCGCTGA-AGGT---GATTGATATGCTGAGGGAGAT-GG 862
|||||||..||| |.|.| |||| .|.|| |||| .||.||.|| ||
BPUM_2330 818 ACGATGAGGTTG-GATTAGAGGTTGCCAATG-TATG--TAGTGACATCGG 863
BSNT_05138___ 863 A-TCTTAAAGTGCCGGAGGATATGTCTATTGTCGGGTACGATGATTCACA 911
| |||..| |.||.|||||..|.||.|||.|.||..|.||..||||..|
BPUM_2330 864 ACTCTCCA--TTCCAGAGGACCTCTCCATTATTGGACAGGACAATTCGTA 911
BSNT_05138___ 912 TTTCGCCC----AAATCTCAGAAGTGAAACTAACCTCTGTCAAACATCCG 957
|.|.|||| ||||..|| |.|||||.|||||..||.|.|..||.||
BPUM_2330 912 TATTGCCCAGAAAAATGCCA-ATGTGAAGCTAACAACTTTGACCCACCC- 959
BSNT_05138___ 958 AAATCA-GTGC---TTGGAA---AAGCAGCCGCCAAATATGTCATTGACT 1000
||| |.|| |.||.| |.||||| .||||
BPUM_2330 960 ---TCAGGAGCAAATGGGGAGGGATGCAGC---------------AGACT 991
BSNT_05138___ 1001 GCTTAGAGCATAAAAAGCCGAA--GCAAG------AGGATGT-------- 1034
| ||..||||||| || ||||| ||.||.|
BPUM_2330 992 G----GATGATAAAAA----AAGTGCAAGGGAAAAAGAATCTCCCTCATC 1033
BSNT_05138___ 1035 ----CATATTTGAGCCTGAGTTGATCATTCGCCAGTCCGCACGA--AAAC 1078
|.|.|.|||.|||||.|||.| .||||.....|||| ||||
BPUM_2330 1034 AAACCTTTTATGAACCTGAATTGGT-----TCCAGGTGAAACGATCAAAC 1078
BSNT_05138___ 1079 ---TGAATG-AATAA-------- 1089
|||||| ||.||
BPUM_2330 1079 AAATGAATGCAAGAAAAAAATGA 1101
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