Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00613 and BPUM_2332

See Amino acid alignment / Visit BSNT_00613 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:24
# Commandline: needle
#    -asequence dna-align/BSNT_00613___hxlB.1.24716.seq
#    -bsequence dna-align/BPUM_2332___hxlB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00613___hxlB-BPUM_2332___hxlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00613___hxlB-BPUM_2332___hxlB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00613___hxlB
# 2: BPUM_2332___hxlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 627
# Identity:     365/627 (58.2%)
# Similarity:   365/627 (58.2%)
# Gaps:         138/627 (22.0%)
# Score: 937.0
# 
#
#=======================================

BSNT_00613___      1 ATGAAAACGACTGAATACGTAGCGGAA----ATTCTCAATGAGTTACACA     46
                     |||||.||.|.|||.||.||    |||    |||.|.||||||.|     
BPUM_2332___h      1 ATGAAGACCAGTGACTATGT----GAAAGCCATTTTAAATGAGCT-----     41

BSNT_00613___     47 ATTC--AGCAGCT-----TATATTTCTA-ATGAAGAGGCTGACCAGCTTG     88
                      |||  |||| ||     .||| |||.| |.|||.|.||.||.|.|||||
BPUM_2332___h     42 -TTCTGAGCA-CTCGCCGGATA-TTCAAGACGAACAAGCAGAGCGGCTTG     88

BSNT_00613___     89 CCGATCA--CATT----CTGTCATCCCACCAAA----TTT---TCACCGC    125
                     .|  |||  ||||    |||      ||..|||    |||   |||    
BPUM_2332___h     89 TC--TCAAGCATTTTCACTG------CAAGAAAGGTCTTTGTGTCA----    126

BSNT_00613___    126 GGGTGCGGGTCGGTCTGGCCTGATGGCAAAATCCTTCGCGATGAGACTGA    175
                      ||.||.||..|||||||..||||||.||||||.||.||.||||||||.|
BPUM_2332___h    127 -GGGGCTGGCAGGTCTGGTTTGATGGGAAAATCATTTGCCATGAGACTCA    175

BSNT_00613___    176 TGCACATGGGCTTCAACGCCCATATAGTAGGTGAGATTCTC----ACTCC    221
                     ..||.||.|||.||||.||..||.|..|.|||||.|    |    ||.||
BPUM_2332___h    176 CACATATTGGCGTCAAGGCATATGTGATCGGTGAAA----CCAATACACC    221

BSNT_00613___    222 GCCGCTCGCCGAAGGAGATCTAGTTATTATCGGCTCAGGATCAGGCGAGA    271
                     ..|..|..|.||||.||||.|..|.|||.|.||....|||||.|||...|
BPUM_2332___h    222 TTCCTTTACAGAAGAAGATATCTTAATTGTTGGGAGCGGATCTGGCCGTA    271

BSNT_00613___    272 CAAAGA----GCTTGATTCATACCGCAGCAAAAGCAAAAAGCTTACACGG    317
                     ||.|||    |||||  ||.|  .|||..||||||||||         |.
BPUM_2332___h    272 CAGAGACTTTGCTTG--TCCT--TGCAAAAAAAGCAAAA---------GC    308

BSNT_00613___    318 AATT---------GTTGCCGCTTTAAC----------CA-TCAATCCGGA    347
                     ||||         ||.||.|||||.||          || |||  ||   
BPUM_2332___h    309 AATTGGTGGAAAAGTGGCAGCTTTTACGCTTTCTGCTCAGTCA--CC---    353

BSNT_00613___    348 ATCAAGC------GTCGGAAAACAAGCGGACCTCATCATCAGAATGCCTG    391
                      ||.|||      .||||  |..|||         |||||..|.||.|.|
BPUM_2332___h    354 -TCTAGCTGATCTATCGG--ATGAAG---------TCATCTTACTGTCAG    391

BSNT_00613___    392 GTTCTCCTAAAGACCCGTCAAAC-----GGAAGCTATAAAACCATTCAGC    436
                     ||.|.||.||.||.|     |||     ||||||.||.|.||||||||||
BPUM_2332___h    392 GTGCGCCGAAGGATC-----AACAGGGGGGAAGCCATGATACCATTCAGC    436

BSNT_00613___    437 CAATGGGATCATTATTTGAACAAACTTTGCTGCTATTC-----TATGATG    481
                     |||||||.||..|||||||.||   .|.|||  |.|||     ||.||||
BPUM_2332___h    437 CAATGGGTTCGCTATTTGAGCA---GTCGCT--TCTTCTGACATACGATG    481

BSNT_00613___    482 CAGTGATTTTAAAACTCATGGAGAAAAAAGGACTCGATTCTGAAACTATG    531
                     |.||.||||||...||.|||||.|..||||..|||||..|..|.||.|||
BPUM_2332___h    482 CGGTCATTTTACGGCTAATGGAAATGAAAGAGCTCGACACACATACAATG    531

BSNT_00613___    532 TTCACTCACCACGCAAACCTTGAATAG    558
                     |.|..||||||.|||||..|.||||||
BPUM_2332___h    532 TACGGTCACCATGCAAATTTAGAATAG    558


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