Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01394 and BPUM_2348

See Amino acid alignment / Visit BSNT_01394 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:59
# Commandline: needle
#    -asequence dna-align/BSNT_01394___yfiS.1.24716.seq
#    -bsequence dna-align/BPUM_2348.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01394___yfiS-BPUM_2348.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01394___yfiS-BPUM_2348.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01394___yfiS
# 2: BPUM_2348
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1579
# Identity:     681/1579 (43.1%)
# Similarity:   681/1579 (43.1%)
# Gaps:         683/1579 (43.3%)
# Score: 1127.5
# 
#
#=======================================

BSNT_01394___      1 ATGGAAAAACCGTTGTTTCGCAATCAAAAAGGACTGATGACACTGTT---     47
                     |||.||||||..|.|   ||..||            ||||    |||   
BPUM_2348          1 ATGAAAAAACATTGG---CGGGAT------------ATGA----GTTTGC     31

BSNT_01394___     48 -------AGCC-TCGCAA-----ACCATTTCTTCACTTGGAGACTGGCTT     84
                            |||| |||.||     |.||         |.|||||.|||.||
BPUM_2348         32 TGCTTGGAGCCATCGGAATTGCGAACA---------TAGGAGAATGGATT     72

BSNT_01394___     85 CACATTTTGGCCGTGCTAACATTAGCCGCTTTTCAGCTTCATGCTTCTCC    134
                     .|.||..|.||                        |||.||| ||.||| 
BPUM_2348         73 TATATGATTGC------------------------GCTCCAT-CTACTC-     96

BSNT_01394___    135 ATTAGATATGTCGCTTTTAATGA---------TGTCGTTTGCTTT---GC    172
                            ||     ||||.|.||         ||| |.|||||.|   |.
BPUM_2348         97 -------AT-----TTTTCAAGAAACGGGCTCTGT-GCTTGCTGTAACGG    133

BSNT_01394___    173 CTGTC-AT-TGTACTCGGACCTGTATCGGGTCTGCTTGCCGACCGTTTTG    220
                     ||||| || |||  |..||||.||        |||||     |..||||.
BPUM_2348        134 CTGTCTATATGT--TGAGACCAGT--------TGCTT-----CTCTTTTA    168

BSNT_01394___    221 ACAGAAAAAC-GATCAT----GTTT------CTGTCTGAA--ATCGG-AC    256
                     ||| ||.|.| |.|| |    ||||      |.|.|||||  |.||| |.
BPUM_2348        169 ACA-AACAGCTGGTC-TGGCAGTTTGATTGACAGGCTGAATCAGCGGAAA    216

BSNT_01394___    257 GTGCCCTCACCGTTATCAGCTGCGTTTATGTCAGT-----GAGCTT--TG    299
                     |||        .|.|||||||   |..||.|||||     .|.|||  |.
BPUM_2348        217 GTG--------ATGATCAGCT---TAGATATCAGTCGGGCAATCTTGATC    255

BSNT_01394___    300 GCAGCTTTACGTA----TTGCTATGCCTTCAGAGCTGTTTTTCTTCACTT    345
                     ||  ||.||  ||    ||||.||...|||||.|     |.|||.|    
BPUM_2348        256 GC--CTGTA--TACCCTTTGCGATATTTTCAGGG-----TATCTGC----    292

BSNT_01394___    346 TTTTCACCTGCTA--AAAACGGAAAGCTTAAGGAATTGGCTCCGGAAGCA    393
                        |.||||..||  .||.||.....||||...||.||||.|   |||| 
BPUM_2348        293 ---TTACCTTGTATGTAATCGTCTTTCTTATTCAAATGGCAC---AAGC-    335

BSNT_01394___    394 CACATTCAGCAGGCTGTTTCCGCCAGCAGCATCATTGATAACAGTGCAAA    443
                                 |.||||||..||.|                        
BPUM_2348        336 ------------GATGTTTCATCCGG------------------------    349

BSNT_01394___    444 AATCTTCGGCCCTGCCCT---TGGCGGCATGCTGATCGCTGCTGTCTCTA    490
                        |||||   .||..||   ||.|||.||  ||||..|.||.|     |
BPUM_2348        350 ---CTTCG---ATGGTCTATATGACGGGAT--TGATTCCGGCGG-----A    386

BSNT_01394___    491 TA-------------------CATTCTGTTTTCTATATTA-ACGCCGGCG    520
                     ||                   |||||   .|||..||||| |..|.||.|
BPUM_2348        387 TAATCGAAAAAGATTTAATGCCATTC---GTTCATTATTACAATCGGGTG    433

BSNT_01394___    521 CCTTT---CTTCTTTCCGCTGT--CA-------TTTTGTTTTTC----CT    554
                     ..|||   |||..|.|||||||  ||       ||||.||..||    ||
BPUM_2348        434 GGTTTTTACTTGGTCCCGCTGTAGCAGGTCTGCTTTTTTTAATCGGAACT    483

BSNT_01394___    555 CCCCAAAGATGCTTTTTTACAAAAAGCCAATACACCTCAAGAAAAAACAT    604
                     ||       ||.|||||          ||||..|..||||          
BPUM_2348        484 CC-------TGTTTTTT----------CAATTTATATCAA----------    506

BSNT_01394___    605 CAGCACT---------------TGCTTCTATTAAAGAAG-GCCTTCAGTA    638
                      .|||.|               ||| |||.||.|.||.| |..|.|.|.|
BPUM_2348        507 -TGCAATTTGTCTATTGGTATCTGC-TCTGTTCACGATGTGTTTACCGAA    554

BSNT_01394___    639 TTTG---AAAC-GGATGCCA----------CTT----CTTTTAAT-----    665
                     ||||   |||| .|||||.|          |||    ||||.|||     
BPUM_2348        555 TTTGCTCAAACAAGATGCTAACCAAAAGGGCTTTACCCTTTCAATGTTAA    604

BSNT_01394___    666 ---AGGCTTACTCACAGCTTGCGTCGTTCTC---TTTGTTTTG-------    702
                        |||   |..|..|||||     ||||||   |||..||||       
BPUM_2348        605 AAGAGG---ATGCGAAGCTT-----GTTCTCCGGTTTAGTTTGACATCAC    646

BSNT_01394___    703 --CAGATT-----GGTG--------ATTCCCAG----GCTATCA------    727
                       ||||||     ||||        |||  .||    |||||||      
BPUM_2348        647 GCCAGATTATGACGGTGTATTTGTTATT--TAGTGCTGCTATCACGGTAC    694

BSNT_01394___    728 TTCTTA-TCCG-----TTCT------------TTTTC-----AGGCGCTC    754
                     |||.|| |.||     ||||            |||.|     |.|.||||
BPUM_2348        695 TTCCTACTGCGATTGATTCTCTTGAAACAGCCTTTGCAAAAGAAGTGCTC    744

BSNT_01394___    755 CGCCTGAGCTTGCAGGCTGGTGC-----ATGGCCGTC----------AGC    789
                     |         |||.|.|||.|.|     ||||.|.||          |||
BPUM_2348        745 C---------TGCTGACTGATACACAATATGGTCTTCTTGTTAGTATAGC    785

BSNT_01394___    790 -GGAGCCGGCATGCTC------------CTTACGGCGGCAATTGCCG---    823
                      ||.||.||.||..||            ||||...|||..||||..|   
BPUM_2348        786 TGGGGCAGGTATTATCGCAGGCGCAGGTCTTAATTCGGTGATTGTGGAAA    835

BSNT_01394___    824 -GCAGACGG---CGAATCA-CCTC-------TTATTTTCTTT--------    853
                      ||.|||.|   || |||| .|||       .||.|||.|||        
BPUM_2348        836 AGCTGACTGTTTCG-ATCATGCTCGGGGTTGGTAGTTTGTTTGTGGCATG    884

BSNT_01394___    854 ---ATTTCTCAGCTGGGACCTTTCTGCTTGGACTAGCAACTGGAGGCGTG    900
                        .|.|||||         |||.|||||...|.||||            
BPUM_2348        885 TGGCTATCTCA---------TTTATGCTTTTTCCAGCA------------    913

BSNT_01394___    901 CCATT-TCTGAGCGGAATGGGAATTGCCGGCATTGCTCTTTTTATTTTCG    949
                      |||| |.||.|             ||||...|||...|||||||.||.|
BPUM_2348        914 -CATTGTTTGCG-------------GCCGCTGTTGGATTTTTTATATTAG    949

BSNT_01394___    950 C--TTTTTTCATCATGGGAGCGGCTTTT---------GGTCTGGTCCATA    988
                     |  |.||||.|           ||||||         |||.|      ||
BPUM_2348        950 CATTCTTTTTA-----------GCTTTTGCGAACACAGGTTT------TA    982

BSNT_01394___    989 TTCCATTTCAAATTCTCGTGCAAAC-AACAGTGCCGGTTGATTACAGCGG   1037
                     |..| ||||.|        .||||| ||.| |.|||||.||         
BPUM_2348        983 TGAC-TTTCTA--------TCAAACGAATA-TCCCGGTAGA---------   1013

BSNT_01394___   1038 CAGGGTGTTTGGCGCCATTCAGAGCGCGACAACCCT-----CGCCTCCAT   1082
                        |||| .|||.||.|.|   ||||.|       |     |||.|    
BPUM_2348       1014 ---GGTG-ATGGGGCGAGT---AGCGAG-------TTTTTACGCTT----   1045

BSNT_01394___   1083 CCTCGGCATGGCGGGCGGAGGCATGCTGGCG--------GAATGGAT---   1121
                             |||.|   |.||.|||.|||.||        ||..||||   
BPUM_2348       1046 --------TGGTG---GAAGCCATTCTGACGATCATGATGACAGGATTCT   1084

BSNT_01394___   1122 -CGGTG---TTTCACTTGCTTT-----------------------TC--T   1142
                      .||||   ||.|||.||.|||                       ||  |
BPUM_2348       1085 CTGGTGGACTTGCACATGTTTTATCAATCAGAACCTCCGTTGTCATCGGT   1134

BSNT_01394___   1143 TGTCTGTGGCTGCTTGCTGATCTTGATTGGGTTGATTACACTTGTAGGTA   1192
                     .||||.||..||||      |||||  |..|||.|||             
BPUM_2348       1135 AGTCTATGTATGCT------TCTTG--TCTGTTTATT-------------   1163

BSNT_01394___   1193 AGAAAGTTTCAGAAAGCAGGCGATATCTTGTCACCAAAAGTAACAAAGGA   1242
                                        ||.||.|.||||||.|....||  |.|..||
BPUM_2348       1164 -------------------GCTATGTTTTGTCATCTTTCGT--CCATTGA   1192

BSNT_01394___   1243 ---GCACAAGGATAA--------------   1254
                        |||.||.||||.              
BPUM_2348       1193 CTGGCAAAAAGATAGTGCATCCTACTTAG   1221


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