Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05300 and BPUM_2353
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:54
# Commandline: needle
# -asequence dna-align/BSNT_05300___yvcC.1.24716.seq
# -bsequence dna-align/BPUM_2353.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05300___yvcC-BPUM_2353.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05300___yvcC-BPUM_2353.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05300___yvcC
# 2: BPUM_2353
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2051
# Identity: 1058/2051 (51.6%)
# Similarity: 1058/2051 (51.6%)
# Gaps: 613/2051 (29.9%)
# Score: 2180.0
#
#
#=======================================
BSNT_05300___ 1 ATGCCAAACCAGAAA-CAAAAATCTAAAAG-TAAATTGAAACCCTTTT-- 46
|| |||| ..|||||||.|.|| | |||.| ||||
BPUM_2353 1 AT---------GAAAGGGAAAATCTCACAGCT---TTGGA----TTTTGA 34
BSNT_05300___ 47 ----TTGCCTTAGTAAGACG----------TACCAATCCTTCTTATGGAA 82
|.|| |||.|.|.| .||.|.|.||| ||||
BPUM_2353 35 TGAATCGC---AGTCAAATGGCGAATGGTCAACTAGTTCTT-TTAT---- 76
BSNT_05300___ 83 AGCTCGCCTTTGCGCTTGCCCTCAGTGTTGTA-ACCACACTGGT--CAG- 128
||| || .|||||.|.||| | ||| |||
BPUM_2353 77 --------TTT----TT---ATCAGTATCGTAGA-------GGTGGCAGC 104
BSNT_05300___ 129 ----CCTGCTCATTCCATTATTAACGAAGCAGCTTGTCGATGATTTTTCT 174
|.|||| .|.|||.||.|.||.|.|.|||||.|..|
BPUM_2353 105 TGGACTTGCT-GTGCCACTACTCACAATGAAGCTTATTAA---------- 143
BSNT_05300___ 175 ATGTCAAATCTGTCAGGCACGCAAATCGGTTTG----ATCG--------- 211
||||| |.||||..|| |.|.|||| |.||
BPUM_2353 144 ---TCAAA--TTTCAGATAC-----TGGTTTTGCATTAACGTCACTCTTA 183
BSNT_05300___ 212 -----CGCTGGTGTTTT--TCGTTCAGGCGGGTTTAAGCGCTTA-TGCC- 252
|..|||.||||| |.||.|||||| ..||||| ||||
BPUM_2353 184 CCAGTCATTGGCGTTTTAATTGTACAGGCG-------ATGCTTAGTGCCG 226
BSNT_05300___ 253 --ACCTATGCGCTTAACTATAATG-GACAAAAAATCATTTCCGGACTGCG 299
||.| ||.| |||.||| | ||.|||..| ||..
BPUM_2353 227 TTACAT------TTTA-TATGATGCG--------TCGTTTAGG---TGAA 258
BSNT_05300___ 300 GGAGTTATTATGGA---------AGAAATTAAT-------TAAGCTTCCT 333
||||||.||..|.| |||||| || ||.|||.|.|
BPUM_2353 259 GGAGTTGTTGCGAATTTACGAACAGAAAT--ATGGGAGCATATGCTACAT 306
BSNT_05300___ 334 ------GTCTCTTATTTCGATACAAATGCTTCCGGAGAAACAGTCAGCCG 377
.|..||||||.||||.||.|||..||.||.|||||..|.||.||
BPUM_2353 307 TTACGATTAACTTATTACGATGCACATGAATCTGGCGAAACGATGAGTCG 356
BSNT_05300___ 378 TGTAACGAATGATACGATGGTGGTCAAAGAACTGATTACAACCCACATCA 427
..|.|||.|.|||||.|..||.||.||.||
BPUM_2353 357 AATTACGCAGGATACAAACGTCGTAAAGGA-------------------- 386
BSNT_05300___ 428 GCGGGTTTATTACAG----GCATCATTTC---TGTCATTGGATCATT--- 467
||||.|.|||| || ||.|.|| ||| ||.||..|.||
BPUM_2353 387 ----GTTTGTAACAGAAAAGC-TCGTGTCGTTTGT-ATCGGGACTTTTCG 430
BSNT_05300___ 468 -GA---------CAATC-TTG-TTTATTATG----AACTGGAAGCTGAC- 500
|| ||||| ||| ||||.|||| .|||||||..||||
BPUM_2353 431 CGATACTCGGTGCAATCGTTGTTTTACTATGGATTGACTGGAAAATGACG 480
BSNT_05300___ 501 --ACTGCTTGTGTTAGTGGTTGTTCCGCTGGCCGCTCTTATTTTGGTG-- 546
||||||..|| .|.|..||.||.||..|| |||||.|||
BPUM_2353 481 CTACTGCTACTG---ATCGCCGTACCACTAACC------ATTTTTGTGAC 521
BSNT_05300___ 547 ----CCGATTGGACGGAAAATGTTCTCCATTTCACGGGAAACG-----CA 587
|||.|.|||...|||||||.|.|.||||| |||| | ||
BPUM_2353 522 GTATCCGTTAGGAGAAAAAATGTACGCGATTTC----GAAA-GCCAATCA 566
BSNT_05300___ 588 AGATGAAACGGCTCGTTTTACAGGCCTGCTGA--ATCA-----AATTCTC 630
||||||...|||..|.||| .||.|| ||.| ||||.|.
BPUM_2353 567 AGATGAGTTGGCAGGATTT-------GGCGGACGATTAGGGAGAATTTTA 609
BSNT_05300___ 631 CCGGAAATCAGACTCGTCAAGGCTT--CAAATGCGGAG------GATGTC 672
.|..|.||..|.||.||.||.|||| |||| |.||| ||..|.
BPUM_2353 610 ACAAACATTCGCCTTGTGAAAGCTTCGCAAA--CAGAGCAGCAAGAGCTA 657
BSNT_05300___ 673 GAATATGGTCGCGGGAAGATGGGGATTTCCTCATTATTTA--AGCTTGGC 720
|.| .||||.||.|.| || .|||.| ||||
BPUM_2353 658 GCA------GGCGGAAAAAAG----------CA-AATTCAGCAGCT---- 686
BSNT_05300___ 721 GTTC--GT-----------GAAGCCAAGGTTCAATCGCTTGTCGGCCCGC 757
||.| || |||||.|| || ||||.| ||.
BPUM_2353 687 GTACAAGTACGGATTAAAAGAAGCAAA-----AA----TTGTTG---CGA 724
BSNT_05300___ 758 TTATTTCA---------------CTCGTGTTAATGGCA------GCGCTT 786
||.||||| |||.||.|.||.|.| |||.||
BPUM_2353 725 TTCTTTCACCACTTATGACGTTGCTCATGATGATTGTAATCATTGCGATT 774
BSNT_05300___ 787 GTCGCAGTGATCGGATATGGCGG--CATGCAGGTCTCATCAGGCG----- 829
.|.||.||.||||| || |||||..|.|||||.|
BPUM_2353 775 ---------TTTGGGTACGGCGGTTCA--CAGGTTGCTTCAGGTGCCATT 813
BSNT_05300___ 830 AGCTCACAGCCGGAGCGCTCGTGGCTTTTATTTTATATTTATTTCAAATT 879
||.| |.||.|.|||.|||||..|.||..|.||||||.|.||||||
BPUM_2353 814 AGTT-----CTGGCGAGCTTGTGGCAATCATGATTTATTTAGTACAAATT 858
BSNT_05300___ 880 ATTATGCCGATGGGCCAGATTACA---------ACGTTTTTCACACAGCT 920
|||||||| || ||||| ||.||.||.||..|..|
BPUM_2353 859 ATTATGCC-AT--------TTACACAAATGGCGACATTCTTTACTGATTT 899
BSNT_05300___ 921 GCAAAAATCAATCGGTGCAACAGAACGAATGATTGAGATTTTGGCAGAGG 970
.||||||.||.|.||.||||||||.||.||..|.|||...||.|..|| |
BPUM_2353 900 ACAAAAAACACTGGGCGCAACAGAGCGTATTGTCGAGGCCTTAGATGA-G 948
BSNT_05300___ 971 AAGAG-GAAGATACAGTGACAGGAAAACAAATTGAAAATGC----GCATC 1015
|||.| |||| |||| .|||.|..||.| .|.||.||| .|| |
BPUM_2353 949 AAGCGTGAAG-TACA-AGACGGTGAACC----GGTAACTGCTACGTCA-C 991
BSNT_05300___ 1016 TGCCTATCCAGCTTGATCGCGTGTCTTTTGGATATAAGCCTGAT-CAGCT 1064
.|||.||.||..||||.|..|||||.|| |||| | ||.|
BPUM_2353 992 AGCCGATTCATTTTGAACATGTGTCGTT------TAAG-----TACAAC- 1029
BSNT_05300___ 1065 GA--------TCTTAAAAGAGGTCAGCGCTGTCATTGAAG-CAGGTAAAG 1105
|| |.||||||||..|.| ||.|..|.||.||| ||..|.||.
BPUM_2353 1030 GAAAAATACGTGTTAAAAGATATGA-CGTTTACGTTAAAGCCAAATGAAA 1078
BSNT_05300___ 1106 TCACAGCGATTGTCGGTCCGAGCGGCGGGGGGAAAACGACGCTGTTTAAG 1155
..||.||..|||||.|.|.|||.||.||.||||||||||||.|||||...
BPUM_2353 1079 CAACGGCCTTTGTCAGCCGGAGTGGTGGCGGGAAAACGACGATGTTTTCC 1128
BSNT_05300___ 1156 CTGCTTGAACGTTTTTAT---------TC---TCCG--ACTGCAGGGTC- 1190
||..|||||||.||.||| || |.|| ||||.|.|| |
BPUM_2353 1129 CTTATTGAACGATTCTATGTCGTGACATCAGGTGCGATACTGTATGG-CA 1177
BSNT_05300___ 1191 -------CATTCGGCTGGGGGACGAGCCGATTGATACTTATTCGCTTGAA 1233
|||| ||| |.|||.| |||||.|.|
BPUM_2353 1178 AAGAAAACATT------------GAG-CAATTTA-ACTTAATAG------ 1207
BSNT_05300___ 1234 TCA-TGGCGGGAGCACATCGGGTATGTA--TCACAGGAAA-GC-CCGTTA 1278
| |||||.||||...|.||.|||||| ||| ||| || ||||||
BPUM_2353 1208 --AGTGGCGTGAGCTGTTTGGCTATGTAAGTCA----AAATGCACCGTTA 1251
BSNT_05300___ 1279 ATGTCCGGGACAATCAGAGAAAATATTTGCTACG---GGTTAGAACGTGA 1325
.| ||| ||..||| .||.|.|||||.|
BPUM_2353 1252 TT------------------AAA----TGGAACGATTCGTGACAACGTCA 1279
BSNT_05300___ 1326 TGT----GACGGATGCTGAG--ATCGAAAAA---------GCCGC----- 1355
||| ||||.||| ||| |..|||.|| |||||
BPUM_2353 1280 TGTACGGGACGAATG--GAGCAAGTGAACAAGAGGTACTTGCCGCATTAA 1327
BSNT_05300___ 1356 --GGAG---ATGGCATATGCGCTCAATTTTATAAAGGAGCTGCCGAATCA 1400
|.|| || ||.|||| |||||.|.|.|.|||||...||.||
BPUM_2353 1328 AAGCAGCCTAT-GCCTATG------ATTTTGTCATGCAGCTGGAAAAACA 1370
BSNT_05300___ 1401 GTTTGATACAGAAGTAGGCGAACGCGGCATTATGCTGTCAGGCGGACAAA 1450
..|.||||||||.||.||.|||.|.||.||||.|||.||.||.||.||||
BPUM_2353 1371 CCTCGATACAGAGGTTGGTGAAGGAGGTATTAAGCTTTCGGGTGGTCAAA 1420
BSNT_05300___ 1451 GGCAAAGAATCGCGATTGCGAGAGCACTTCTCCGTAACCCAAGCATTCTT 1500
..||..|.||.||||||||..|.||..||.|.||.||.||.|| |.||||
BPUM_2353 1421 AACAGCGTATTGCGATTGCTCGTGCGATTTTACGAAATCCGAG-AATCTT 1469
BSNT_05300___ 1501 A-TGCTCGATGAAGCTACCTC-AAGTCTCGACAGCCAATC------TGAA 1542
| |.||.|||||.||.||.|| ||.| |.||.|.|.|||| |||
BPUM_2353 1470 ATTACTTGATGAGGCGACATCGAACT-TAGATAACGAATCAGAGCGTGA- 1517
BSNT_05300___ 1543 AAATCAGTTCAGCAGGCGCTGGAGGTGCTGATGGAAGGCCGCACAACGAT 1592
|||.||||..||.||..|.|.|.|.|.|.||..|||.|..||.||
BPUM_2353 1518 -----AGTGCAGCTTGCTCTTCAAGCGTTAACGAAAAACCGGATGACAAT 1562
BSNT_05300___ 1593 TGTTATCGCTCACCGCCTATCTACCGTTGTAGATGCGGACCAGCTT-TTG 1641
..|.|||||.||.||..||||.||..||..|..|||.|||||..|| |||
BPUM_2353 1563 CATCATCGCCCATCGATTATCCACGATTACAAGTGCAGACCAAATTCTTG 1612
BSNT_05300___ 1642 TTTGTTGAAAAAGGGGAAA----TTACCGGTCGTGGAACACACCATGAGT 1687
|.| |||||.|||| | |..|.||||..||.|||||..|.|..|
BPUM_2353 1613 TCT-TTGAAGAAGG----ACGCTTGTCAGGTCAAGGCACACATGAAGCAT 1657
BSNT_05300___ 1688 T------AATGGCTTCCCATGGCC--TTTATCGGGATTTTGCTGAACAGC 1729
| || |.||| || .||||| ||||||
BPUM_2353 1658 TACAAAAAA------CACAT--CCGTATTATC------------AACAGC 1687
BSNT_05300___ 1730 AGCTG--AAAATG--------AATGCAGACTTAGAAAACAAAGCCGGGTA 1769
.||| |.|||| |.||.||| ||||
BPUM_2353 1688 -TCTGGCATAATGGTCGTTTAACTGAAGA-TTAG---------------- 1719
BSNT_05300___ 1770 A 1770
BPUM_2353 1719 - 1719
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