Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03968 and BPUM_2369

See Amino acid alignment / Visit BSNT_03968 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:27
# Commandline: needle
#    -asequence dna-align/BSNT_03968___udk.1.24716.seq
#    -bsequence dna-align/BPUM_2369___udk.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03968___udk-BPUM_2369___udk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03968___udk-BPUM_2369___udk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03968___udk
# 2: BPUM_2369___udk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity:     474/655 (72.4%)
# Similarity:   474/655 (72.4%)
# Gaps:          41/655 ( 6.3%)
# Score: 1685.0
# 
#
#=======================================

BSNT_03968___      1 ATGGGTAAGAATCCAGTAGTCATTGGAATCGCAGGAGGTTCCGGTTCAGG     50
                     |||.|.|..||.|||||.|||||||||||.||.||.||.||.||||||||
BPUM_2369___u      1 ATGAGGAGTAAACCAGTGGTCATTGGAATTGCTGGCGGCTCGGGTTCAGG     50

BSNT_03968___     51 AAAAACGAGTGTCACACGGTCCATTTATGAACAGTTTAAAGGACACTCAA    100
                     .||||||||.|||||....||.||.||||||.|.|||||||||||.||.|
BPUM_2369___u     51 TAAAACGAGCGTCACCAATTCAATCTATGAAAAATTTAAAGGACATTCCA    100

BSNT_03968___    101 TTTTAATGATCCAGCAGGACCTTTATTATAAAGACCAAAGCCATCTTCCG    150
                     |..|.|||.|.|||||.||..|.|||||.|||.|.|||||.|||.|.||.
BPUM_2369___u    101 TCCTCATGCTACAGCAAGATTTATATTACAAAAATCAAAGTCATATGCCA    150

BSNT_03968___    151 TTTGAAGAAAGGCTGAACACAAACTACGATCATCCGCTTGCGTTTGATAA    200
                     ||||||||..|.|||...||.|||||.|||||||||||.||.||.||.||
BPUM_2369___u    151 TTTGAAGAGTGTCTGCTTACGAACTATGATCATCCGCTCGCATTCGACAA    200

BSNT_03968___    201 TGAC----TATTTAATCGAGCATATT----CAGGATCTATT-------GA    235
                     ||||    |.|||    |||||| ||    |||   ||.||       ||
BPUM_2369___u    201 TGACCTGATGTTT----GAGCAT-TTGGAACAG---CTCTTAAGGTACGA    242

BSNT_03968___    236 ATTACCGCCCGATTGAAAAGCCGATTTATGACTATAAGCTTCACACACGT    285
                     ||       |.||||||||.||.||.|||||.|..|||||..||||||||
BPUM_2369___u    243 AT-------CCATTGAAAAACCAATATATGATTTCAAGCTCAACACACGT    285

BSNT_03968___    286 TCAGAAGAAACGGTTCACGTAGAGCCAAAGGATGTTATTATCCTTGAAGG    335
                     |||||||||||.||.||.||.||.|||||||||||.||.|||.|||||||
BPUM_2369___u    286 TCAGAAGAAACTGTCCATGTTGAACCAAAGGATGTAATCATCGTTGAAGG    335

BSNT_03968___    336 CATTCTTGTTCTTGAAGACAAAAGGCTTCGTGATCTGATGGATATCAAGC    385
                     |||..|||...|.||||||.||.|.||..|.||..|.||||||||.||.|
BPUM_2369___u    336 CATCTTTGCATTAGAAGACGAACGCCTAAGAGACTTAATGGATATTAAAC    385

BSNT_03968___    386 TTTATGTTGATACGGACGCTGACTTGCGTATCATCAGACGGATTATGAGA    435
                     |.|||||.|||||.||.||.||..||||.|||||..|.||.|||.|..|.
BPUM_2369___u    386 TATATGTCGATACAGATGCAGATCTGCGCATCATTCGCCGCATTTTACGC    435

BSNT_03968___    436 GATATTAATGAGCGCGGACGCTCTATTGATTCTGTCATTGAACAATATGT    485
                     ||||..||.||..|.||.||.||.||.||||||||.||||||||.|||||
BPUM_2369___u    436 GATACGAAAGAAAGAGGCCGTTCAATCGATTCTGTGATTGAACAGTATGT    485

BSNT_03968___    486 GTCAGTGGTCCGTCCGATGCATAACCAATTCGTCGAGCCGACGAAACGAT    535
                     .||.||.|||||.|||||||||||.||||||.|.||.|||||.||.||||
BPUM_2369___u    486 ATCTGTTGTCCGACCGATGCATAATCAATTCATTGAACCGACTAAGCGAT    535

BSNT_03968___    536 ACGCTGATATTATTATCCCGGAAGGCGGTCAGAATCACGTCGCAATTGAT    585
                     ||||.|||||.||.|||||.||||||||.||.|||||.||.||.||.||.
BPUM_2369___u    536 ACGCCGATATCATCATCCCAGAAGGCGGCCAAAATCATGTGGCGATCGAC    585

BSNT_03968___    586 CTGATGGTCACAAAAATTCAAACCATTCTTGAACAAAAC---GC-GATTT    631
                     .|.|||||.|||||||||||||||||||||   ||||.|   || ||   
BPUM_2369___u    586 TTAATGGTGACAAAAATTCAAACCATTCTT---CAAAGCCGAGCAGA---    629

BSNT_03968___    632 TGTAA    636
                      ||||
BPUM_2369___u    630 -GTAA    633


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