Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03977 and BPUM_2380
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:28
# Commandline: needle
# -asequence dna-align/BSNT_03977___alaS.1.24716.seq
# -bsequence dna-align/BPUM_2380___alaS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03977___alaS-BPUM_2380___alaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03977___alaS-BPUM_2380___alaS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03977___alaS
# 2: BPUM_2380___alaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2688
# Identity: 2029/2688 (75.5%)
# Similarity: 2029/2688 (75.5%)
# Gaps: 102/2688 ( 3.8%)
# Score: 7448.0
#
#
#=======================================
BSNT_03977___ 1 ATGAAACAC-TTAACTTCTGCGGAAGTGCGTCAAATGTTTTTGGATTTCT 49
|||||| || ||||||||.||..||||.||.|||||||||||.||.||.|
BPUM_2380___a 1 ATGAAA-ACTTTAACTTCAGCTCAAGTACGCCAAATGTTTTTAGACTTTT 49
BSNT_03977___ 50 TTAAAGAAAAAGGACATGCGGTAGAGCCAAGCGCGTCATTAGTGCCTCAT 99
|||||||||||||||||||.|||||.||.||.||.|||.|.||.||.|||
BPUM_2380___a 50 TTAAAGAAAAAGGACATGCTGTAGAACCGAGTGCCTCACTCGTACCGCAT 99
BSNT_03977___ 100 GAGGATCCTTCACTGCTTTGGATCAACAGCGGTGTTGCGACGCTGAAAAA 149
||.|||||..||||..|.||||||||||||||.||.||.||..|.||.||
BPUM_2380___a 100 GATGATCCGACACTTTTGTGGATCAACAGCGGGGTGGCAACATTAAAGAA 149
BSNT_03977___ 150 ATATTTTGACGGCCGTGTCGTGCCGGAAAATCCAAGAATCGTA-----AA 194
|||.|||||.|||||.|||||.||.||.||||| .|||| ||
BPUM_2380___a 150 ATACTTTGATGGCCGCGTCGTACCTGACAATCC-----GCGTATTTGCAA 194
BSNT_03977___ 195 CGCTCAAAAAGCGATCAGAACAAACGATATAGAAAATGTAGGTAAAACTG 244
|||.||||||.|.||..|.|||||.|||||.|||||.|||||.|||||.|
BPUM_2380___a 195 CGCGCAAAAATCAATTCGTACAAATGATATTGAAAACGTAGGGAAAACAG 244
BSNT_03977___ 245 CGCGGCATCACACTTTCTTTGAAATGCTCGGAAACTTTTCCATCGGCGAT 294
|.||.|||||.||.||||||||||||||.||||||||.||.||.||.|||
BPUM_2380___a 245 CACGTCATCATACGTTCTTTGAAATGCTTGGAAACTTCTCTATTGGTGAT 294
BSNT_03977___ 295 TATTTCAAAGAAGAAGCCATTACATGGGCTTGGGAGTTTTTAACGAGCGA 344
|||||.|||||||||||.|||..||||||.|||||.||..|.||.||.||
BPUM_2380___a 295 TATTTTAAAGAAGAAGCGATTGAATGGGCGTGGGAATTCCTCACAAGTGA 344
BSNT_03977___ 345 CAAGTGGATTGGCTTCGAC---AAAGAGCTT--CTCTCTGTTACGGTTCA 389
|.|.|||||||||||.||| || || .|.|||||.||.|||||
BPUM_2380___a 345 CGAATGGATTGGCTTTGACCCGAA-----TTTGTTATCTGTCACTGTTCA 389
BSNT_03977___ 390 TCCTGAAGATGAAGAGGCATATGAGTT-TTGGGCGA-AAAAAATCGGTAT 437
|||.||.||.|||||.||.||| ||| |..||.|| |.|||||||||.|
BPUM_2380___a 390 TCCAGAGGACGAAGAAGCGTAT--GTTCTATGGAGAGATAAAATCGGTGT 437
BSNT_03977___ 438 TCCTGAAGAAAGAATTATCCGTCTGGAAGGGAACTTCTGGGATATCGGTG 487
.|||||.|||.|.|||||.||.||.||||||||||||||||||||.||.|
BPUM_2380___a 438 ACCTGAGGAACGTATTATTCGCCTTGAAGGGAACTTCTGGGATATTGGAG 487
BSNT_03977___ 488 AAGGGCCGAGCGGACCGAATACGGAAATCTTTTACGACCGCGGTGAAGCA 537
|.||.||.||.|||||||||||.|||||.||.||.||||||||||||.||
BPUM_2380___a 488 AGGGCCCAAGTGGACCGAATACAGAAATTTTCTATGACCGCGGTGAATCA 537
BSNT_03977___ 538 TACGGTAATGATCCA-GAA-GATCCGGAGCTTTACCCAGGCGGAGAAAAC 585
||||||.|.||| | ||| |||||.||..|.||.||.|||||||||||.
BPUM_2380___a 538 TACGGTCACGAT--ATGAACGATCCAGAATTATATCCTGGCGGAGAAAAT 585
BSNT_03977___ 586 GACCGTTACCTGGAAGTATGGAACCTTGTGTTCTCAGAGTTCAACCATAA 635
||.|||||.||.|||||.||||||||.||||||||.||.||.||||||||
BPUM_2380___a 586 GAGCGTTATCTAGAAGTGTGGAACCTAGTGTTCTCTGAATTTAACCATAA 635
BSNT_03977___ 636 CCCTGACGGCACGTACACACCGCTTCCGAAGAAAAACATTGATACAGGCA 685
.||.||.||..|.|||||.|||||.|||||||||||.|||||||||||.|
BPUM_2380___a 636 TCCAGATGGGTCATACACGCCGCTGCCGAAGAAAAATATTGATACAGGGA 685
BSNT_03977___ 686 TGGGTCTTGAAAGAATGGTATCTGTCATCCAGAATGTTCCGACAAACTTT 735
|||||||||||.||||||||||||||||.||.||.||.||.||.||||||
BPUM_2380___a 686 TGGGTCTTGAACGAATGGTATCTGTCATTCAAAACGTGCCTACGAACTTT 735
BSNT_03977___ 736 GACACCGATTTGTTTGTTCCGATCATTAAAGCAACAGAATCGATTTCTGG 785
||.||.|||.|.||..|.||.||.|||...|||...|||.|.||||||||
BPUM_2380___a 736 GATACTGATCTATTCATGCCAATTATTCGTGCAGTTGAAACCATTTCTGG 785
BSNT_03977___ 786 TGAAACATATGGCAAAGACAATGTGAAA--GACACTGCGTTTAAAGTGAT 833
.||||..||||||.|| ||||.| |||| ||.||.||.||.|||||.||
BPUM_2380___a 786 AGAAAGCTATGGCGAA-ACAAAG-GAAAAGGATACAGCATTCAAAGTCAT 833
BSNT_03977___ 834 TGCTGACCATATCAGAACGGTTGCCTTTGCTGTCAGTGACGGTGCGCTGC 883
|||||||||.|||.|.|||||||||||||||||.|||||.||.|||||.|
BPUM_2380___a 834 TGCTGACCACATCCGGACGGTTGCCTTTGCTGTAAGTGATGGAGCGCTTC 883
BSNT_03977___ 884 CGTCAAATGAAGGCCGCGGCTATGTATTAAGACGCTTATTACGCCGTGCC 933
|.||.||||||||||||||.|||||.||||||||.||..|.||||||||.
BPUM_2380___a 884 CTTCCAATGAAGGCCGCGGGTATGTGTTAAGACGTTTGCTTCGCCGTGCT 933
BSNT_03977___ 934 GTGCGTTATGCCAAAACGATCAACATCCATCGTCCGTTCATGTTTGATTT 983
|||||||||||.|||||.||..||||||||||.|||||.|||||||||.|
BPUM_2380___a 934 GTGCGTTATGCAAAAACCATTCACATCCATCGCCCGTTTATGTTTGATCT 983
BSNT_03977___ 984 AGTGCCGGTTGTCGCAGAAATCATGGCTGATTTCTATCCTGAAGTGAAAG 1033
|||.||.|||||.||.|||||||||...||||||||.||.||.||..|||
BPUM_2380___a 984 AGTTCCAGTTGTGGCGGAAATCATGAAGGATTTCTACCCAGATGTACAAG 1033
BSNT_03977___ 1034 AGAAAGCGGATTTCATCGCAAAAGTCATTAAAACCGAGGAAGAACGCTTC 1083
.|||||..||.||.||.|||||||||||.||.|..||.||||||||||||
BPUM_2380___a 1034 CGAAAGAAGAATTTATTGCAAAAGTCATCAAGAATGAAGAAGAACGCTTC 1083
BSNT_03977___ 1084 CATGAGACCCTTAATGAAGGGCTTGCGATCCTGTCAGAAATGATCAAAAA 1133
|||||.||..|.||.|||||..|.|||||..||||||||.|.||||||||
BPUM_2380___a 1084 CATGAAACATTGAACGAAGGTTTAGCGATTTTGTCAGAAGTCATCAAAAA 1133
BSNT_03977___ 1134 AGAAAAAGACAAGGGCAG----CAGCGTTATCTCAGGTGCTGATGTGTTT 1179
|||||.||||||.||||| ||| ||.|||||||..|||||.|||
BPUM_2380___a 1134 AGAAAGAGACAAAGGCAGCTCACAG----ATTTCAGGTGAAGATGTATTT 1179
BSNT_03977___ 1180 AAACTGTATGATACGTATGGATTCCCGGTTGAATTGACTGAAGAATACGC 1229
||.||||||||.||||||||||||||.||.||..|.||.||||||||.||
BPUM_2380___a 1180 AAGCTGTATGACACGTATGGATTCCCTGTCGAGCTCACAGAAGAATATGC 1229
BSNT_03977___ 1230 AGAAGACGAGAACATGACGGTTGACCATGAGGGCTTTGAGGAGGAAATGA 1279
||||||.|||.|||||||.||.||.|..||.|||||..|||..||.|||.
BPUM_2380___a 1230 AGAAGATGAGCACATGACAGTGGATCGAGAAGGCTTCCAGGCTGAGATGG 1279
BSNT_03977___ 1280 ACCAGCAGCGTGAACGGGCAAGAAACGCCCGCCAGGATGTCGGCAGCATG 1329
|..|||||||||||||.||||||||.||.||.||.|||||||||||.|||
BPUM_2380___a 1280 AAAAGCAGCGTGAACGTGCAAGAAATGCGCGACAAGATGTCGGCAGTATG 1329
BSNT_03977___ 1330 CAGGTGCAGGGCGGCGCACTGCGCGACGTGACCGATGAAAGCACATTTGT 1379
|||||.||.|||||.||..|..|.||..|.|..|..||||||||||||||
BPUM_2380___a 1330 CAGGTTCAAGGCGGTGCTTTAGGAGATATTAAAGTAGAAAGCACATTTGT 1379
BSNT_03977___ 1380 CGGCTACTCTCAAACCAAA--GCTGATGCCAATATCATTGTGCTTCTTCA 1427
|||||| |..|||.|.|| ||.|.|||..||||.||||...|.|||||
BPUM_2380___a 1380 CGGCTA--CGAAAATCTAACGGCAGTTGCTCATATGATTGAATTGCTTCA 1427
BSNT_03977___ 1428 GGACGGCCAATTAATCGAAGAGGCTTATGAAGGAGAAAGCGTTCAAATCA 1477
..|.||..||.|..||..|||.||..|||||||.||.|..||.||||| .
BPUM_2380___a 1428 AAATGGTGAAATTGTCTCAGAAGCACATGAAGGCGATACAGTACAAAT-T 1476
BSNT_03977___ 1478 TTCTT-GATGAAACACCGTTCTATGCAGAAAGCGGCGGCCAAATCGGGGA 1526
||.|| |||||||||||.||.|||||||||||||||||.|||.|.|..||
BPUM_2380___a 1477 TTATTAGATGAAACACCTTTTTATGCAGAAAGCGGCGGACAAGTGGCTGA 1526
BSNT_03977___ 1527 TAAAGG--CTAT-------CTCCGAAGCGAGCAGGCAGTTGTAAGA-ATT 1566
|||||| | || |.|.||||.||.|| || || ||.
BPUM_2380___a 1527 TAAAGGGAC-ATTGAAAAGCGCTGAAGTGATCA-----TT----GACATC 1566
BSNT_03977___ 1567 AAAGATGTTCAAAAAGCGCCAAACGGCCAGCATGTGCATGAAGGTGTTGT 1616
||||||||..||||.||.||||||||.||||||||.||||||||.||.||
BPUM_2380___a 1567 AAAGATGTGAAAAAGGCACCAAACGGTCAGCATGTTCATGAAGGAGTAGT 1616
BSNT_03977___ 1617 GGAGAGCGGTACTGTTCAAAAAGG-CCTGCATGTTACGGCTGAAGTTGAA 1665
.|..||||||||.|...||||||| |.||.| |||||.||.|||||.||
BPUM_2380___a 1617 CGTAAGCGGTACAGCCAAAAAAGGACTTGTA-GTTACTGCGGAAGTGGA- 1664
BSNT_03977___ 1666 GACCA--TATGAGAAGCGGCGTCATTAAAAACCACACGGCAACGCATTTA 1713
|.|| |.|..|||..|||.|..|.|||||||||||.||.||.|||.||
BPUM_2380___a 1665 -ATCAGCTCTTCGAAAAGGCATTGTGAAAAACCACACAGCGACACATCTA 1713
BSNT_03977___ 1714 TTGCATCAGGCTCTAAAAGACGTTCTTGGAACTCATGTCAATCAGGCTGG 1763
|||||||||||..|||||||||||.|.||.|..|||||.||.||.||.||
BPUM_2380___a 1714 TTGCATCAGGCGTTAAAAGACGTTTTGGGCAGCCATGTGAACCAAGCAGG 1763
BSNT_03977___ 1764 CTCTCTTGTAACGGAAAACCGTCTTCGTTTTGACTTCTCGCACTTTGGCC 1813
.||.||.||.|..|||||..|.|||||.|||||||||||.||.|||||.|
BPUM_2380___a 1764 ATCACTGGTGAATGAAAATAGACTTCGCTTTGACTTCTCTCATTTTGGAC 1813
BSNT_03977___ 1814 AAGTGACAAAAGAAGAG----CTCGAACAAATTGAAAGAATCGTAAACGA 1859
||||.|||||||||||| || ||.|||||||.||||||.|||||
BPUM_2380___a 1814 AAGTTACAAAAGAAGAGTTGTCT----CAGATTGAAAAAATCGTGAACGA 1859
BSNT_03977___ 1860 AAAGATCTGGGCGAGCAT-TCCGGTCAGC-ATTGATTTGAAACCGATCGC 1907
|||||||||||...|||| ||.|.| || |||||..||||.|||||.||
BPUM_2380___a 1860 AAAGATCTGGGAAGGCATCTCTGTT--GCTATTGACCTGAAGCCGATTGC 1907
BSNT_03977___ 1908 TGAAGCAAAAGAAATGGGTGCGATGGCACTGTTCGGCGAAAAATATGGCG 1957
|||||||||||||||||||||||||||.||.||.|||||.||.|||||||
BPUM_2380___a 1908 TGAAGCAAAAGAAATGGGTGCGATGGCGCTCTTTGGCGAGAAGTATGGCG 1957
BSNT_03977___ 1958 ATATTGTCCGTGTCGTTCAAGTTGGAGATTACAGCTTAGAGCTGTGCGGC 2007
||||||||||.||.||.|||||.||.|||||||||.|.||.||.||||||
BPUM_2380___a 1958 ATATTGTCCGAGTTGTCCAAGTAGGCGATTACAGCATCGAACTATGCGGC 2007
BSNT_03977___ 2008 GGCTGCCATGT-CAGAAATACAGCAGAAATCGGCTTGTTTAAAATCGTTT 2056
||.||.||.|| || ||||||.||.||||||||.|||||||||||.|..|
BPUM_2380___a 2008 GGTTGTCACGTGCA-AAATACTGCGGAAATCGGGTTGTTTAAAATTGCAT 2056
BSNT_03977___ 2057 CTGAATCCGGAATCGGAGCAGGCACAAGACGGATTGAAGCTGTAACGGGA 2106
|||||||.||.||.||.||.||.|||.|.|||||||||||.||.||.|||
BPUM_2380___a 2057 CTGAATCGGGTATTGGTGCTGGAACACGCCGGATTGAAGCAGTGACTGGA 2106
BSNT_03977___ 2107 CAAGGCGCTTACGTCG----AAATGAACAGC--CAGATTTCTGTATTGAA 2150
.||||.||.||||..| ||||||.|||| ..|||| ||..|
BPUM_2380___a 2107 AAAGGGGCATACGAAGAATTAAATGACCAGCTGGGGATT------TTAGA 2150
BSNT_03977___ 2151 GCAGACCGCTGA-CGAGCTGAAAACAAATATCAAAGAAGTGCCGAAACGG 2199
||||.|.|| || .||||||||..||||||..||.||.||.||.|||||.
BPUM_2380___a 2151 GCAGGCAGC-GAGTGAGCTGAAGTCAAATACGAAGGATGTACCAAAACGT 2199
BSNT_03977___ 2200 GTTGCGGCTCTGCAGGCTGAACTGAAGGAAGCACAAAGAGAAAATGAATC 2249
.|.||..|..|||||||.||..|.||.||||..|||||||||||.|||||
BPUM_2380___a 2200 ATCGCTTCATTGCAGGCAGATTTAAAAGAAGTTCAAAGAGAAAACGAATC 2249
BSNT_03977___ 2250 TCTTCTTGCAAAACTAGGCAACGTGGAAGCAGGAGCAATCCTGTCGAAAG 2299
|||||||||||||.||.||.|.|..||||||||..|.||..|...|||||
BPUM_2380___a 2250 TCTTCTTGCAAAATTAAGCCAGGCTGAAGCAGGCTCTATTTTAGAGAAAG 2299
BSNT_03977___ 2300 TAAAAGAAGTTGACGGCGTAAACGTGCTTGCGGCAAAAGTAAATGCAAAA 2349
|.|.||||.|.|.|||.||.||.|||.|..|.|.|||||||||.||.|||
BPUM_2380___a 2300 TGACAGAAATCGGCGGAGTGAAAGTGTTAACTGAAAAAGTAAACGCGAAA 2349
BSNT_03977___ 2350 GACATGAATCATCTCCGCACTATGGTCGATGAACTCAAAGCAAAGCTTGG 2399
||||||||.|||.|..|.||.|||||.|||||..|.|||||.||..|.||
BPUM_2380___a 2350 GACATGAACCATTTAAGAACAATGGTTGATGATTTAAAAGCTAAATTAGG 2399
BSNT_03977___ 2400 CTCTGCGGTGATCGTGCTTGGTGCGGTACAAAACGATAAAGTTAATATCT 2449
|||.||.||.||.|||||.||.||.||.|||||||..|||||.||.||.|
BPUM_2380___a 2400 CTCAGCTGTCATTGTGCTCGGAGCCGTTCAAAACGGAAAAGTAAACATTT 2449
BSNT_03977___ 2450 CTGCCGGAGTCACAAAGGACCTCATTGAGAAAGGCCTTCACGCCGGCAAG 2499
|.||.|||||.|||||.||..||||.||.|||||.||.||.||.||.||.
BPUM_2380___a 2450 CAGCAGGAGTGACAAAAGATGTCATCGAAAAAGGTCTGCATGCAGGGAAA 2499
BSNT_03977___ 2500 CTGGTTAAACAAGCTGCGGAAGTTTGCGGCGGAGGCGGCGGAGGCCGTCC 2549
||.||.||||||||.||.|||.|.||||||||||||||.||.||.||.||
BPUM_2380___a 2500 CTTGTGAAACAAGCAGCTGAAATCTGCGGCGGAGGCGGGGGCGGACGCCC 2549
BSNT_03977___ 2550 GGACATGGCGCAGGCAGGCGGTAAACAGCCGGAAAAATTAGAAGAAGCTT 2599
.||||||||.||.||||||||.|||||.||.|||||..||||||||||..
BPUM_2380___a 2550 AGACATGGCACAAGCAGGCGGAAAACAACCAGAAAAGCTAGAAGAAGCAC 2599
BSNT_03977___ 2600 TGGCTTCTGTAGAAGATTGGGTGAAATCCGTTTTATAA 2637
||.|.|||||.|||||.|..||.|||||||||||||||
BPUM_2380___a 2600 TGACATCTGTCGAAGAATCTGTCAAATCCGTTTTATAA 2637
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