Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04002 and BPUM_2399
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:30
# Commandline: needle
# -asequence dna-align/BSNT_04002___yrvJ.1.24716.seq
# -bsequence dna-align/BPUM_2399___blyA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04002___yrvJ-BPUM_2399___blyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04002___yrvJ-BPUM_2399___blyA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04002___yrvJ
# 2: BPUM_2399___blyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1823
# Identity: 1012/1823 (55.5%)
# Similarity: 1012/1823 (55.5%)
# Gaps: 451/1823 (24.7%)
# Score: 2761.0
#
#
#=======================================
BSNT_04002___ 1 TTGCACACCTTTTTGATTGTATTTACGCTTAGTATAAACAAATCATTTTA 50
BPUM_2399___b 0 -------------------------------------------------- 0
BSNT_04002___ 51 TTTTTATTTAAAAATCAGAAAGGACTTTACGATATTAAACAAGAATGCTT 100
BPUM_2399___b 0 -------------------------------------------------- 0
BSNT_04002___ 101 TTTTAATGATCATCAGAAAGGAGGACACAATGAACAAGAAATACTTTGTC 150
BPUM_2399___b 0 -------------------------------------------------- 0
BSNT_04002___ 151 CTTATTGTATGTATTATTTTCACCGCAGCGCTATTCCCGACCTTTTCATC 200
||| ||| |||
BPUM_2399___b 1 --------ATG-------------GCA-------------------CAT- 9
BSNT_04002___ 201 CGTTACAGCTGCTCAAGGAG---AAGCGGTCATCGCAACAGATGAAACGA 247
|.|||| ||.|||..|| ||||.||..||||.||||||||||..|
BPUM_2399___b 10 -GCTACA---GCACAAACAGATCAAGCTGTGGTCGCTACAGATGAAATCA 55
BSNT_04002___ 248 ACGTCAGAAGCGGCCCTGGGCTT-AGCTACGGCATTACAGCGGAAGTAAA 296
|.||.|||...||.||| ||||| |||||.||.||..||||.|..||.||
BPUM_2399___b 56 ATGTGAGATCAGGTCCT-GGCTTAAGCTATGGAATCGCAGCTGTTGTGAA 104
BSNT_04002___ 297 AAAGGGAGAACGCTATCCAATTTTAAAGGAAGATGGAGACTGGGTGCAGA 346
....||||||.|||||||.|||.|.|.|.||.|.||.||.||||
BPUM_2399___b 105 GCGCGGAGAAAGCTATCCCATTCTCACGAAACAAGGCGAATGGG------ 148
BSNT_04002___ 347 TACAGCTTGGT---TC---CGGAGAAAAGGGCTGGGTAGTCTCCTGGCTT 390
|||||.|.||| || |||..||||.||||||||.|||||.|||||.
BPUM_2399___b 149 TACAGATCGGTCTATCGAACGGTCAAAAAGGCTGGGTCGTCTCATGGCTG 198
BSNT_04002___ 391 ATTAC------------------AAAGG-----AAGACCAGGCCAGCA-- 415
||||| ||||| |||.|.|.|.| |||
BPUM_2399___b 199 ATTACAACATCATCTGGCAGCCAAAAGGCTGCTAAGTCAAAGAC-GCAAA 247
BSNT_04002___ 416 ---CAAGCTCCTCAGGAAGCAGTGACACTGTGACATCAACAGACCCCGAT 462
.||||||.||.||.|||||| .||.|.|||||.||||.|.|.|||
BPUM_2399___b 248 ATCAAAGCTCATCTGGCAGCAGT---TCTATTACATCGACAGCCACTGAT 294
BSNT_04002___ 463 CTGCGGATGAGAAGCGGCCCGGGCACTTCCTACGAAGTCATCGGCAAATT 512
||.||.||..|.|..|||||.||.||||||||..|||||.||||.|..||
BPUM_2399___b 295 CTTCGCATACGGACAGGCCCTGGGACTTCCTATCAAGTCGTCGGAACTTT 344
BSNT_04002___ 513 CCCGCAAGG-----CAGCCAAGCATCTGTCATTGATAAAGATTCG-GGC- 555
||||||||| |.||.||..|.||| || ||.|| | |||
BPUM_2399___b 345 CCCGCAAGGCGCTTCCGCTAAAAAGCTG-CA--GACAA------GCGGCG 385
BSNT_04002___ 556 --TGGATCAAGATATCCTATCA-----CAGTGCCACCGGGTGGGTATCA- 597
||||..||.||.||.|||.| |||| .||.||||| |||
BPUM_2399___b 386 AATGGACAAAAATTTCGTATAAACAAGCAGT-----AGGCTGGGT-TCAC 429
BSNT_04002___ 598 TCTGAATATGTCACATCAGGAGGCAGCAGTTCA----GCGTCTGATGAGA 643
|||||.||||| .|||||.||| || ||.|||.|
BPUM_2399___b 430 TCTGATTATGT---GTCAGGCGGC-------CAAAAGGCCTCTCA----- 464
BSNT_04002___ 644 GTGACCAAACCGAGGATTCCGGTGCGTC-----------AAC-GACGGGC 681
|.|||.| ||.||.|.||| ||| |||.|||
BPUM_2399___b 465 ---ATCAAGC-------TCTGGCGAGTCCTCTCGCTCTAAACAGACAGGC 504
BSNT_04002___ 682 ACAGTCGGTGTTTCTTCGC-TAAATGTAAGAGC-CTCCGCCTCACATGAC 729
|||||.||.||.|| ..|| |.|||||||| || .||.||..|||
BPUM_2399___b 505 ACAGTTGGCGTATC-GAGCTTGAATGTAAG-GCAATCGGCAGCAC----- 547
BSNT_04002___ 730 GCGGCAATTAT-AACAAA----------ACTTGATCGCGGAACGAAAC-- 766
||| || .||||| ||||| |.||.||| |.||
BPUM_2399___b 548 ----CAA--ATGCACAAATTGTCGCTTCACTTG--CCCGCAAC-ACACAG 588
BSNT_04002___ 767 -TGACGGTTCTCAACGAGAAAAATGGCTGGGCTCACATTGAGGTGAACGG 815
|.||..||.|...||||.|.||.||||||..|.|.|||||||..||.||
BPUM_2399___b 589 GTTACTATTTTGCGCGAGCAGAACGGCTGGTATGAAATTGAGGCAAAAGG 638
BSNT_04002___ 816 GCTAAAAGGCTGGGTTGCAAGCCATTACCTTTTGACTAGTTCTGTTCCAG 865
..|.||||||||||..||||||.|||||.|..|.||.||...|| .||
BPUM_2399___b 639 CGTGAAAGGCTGGGCAGCAAGCTATTACATCGTCACAAGCAATG---GAG 685
BSNT_04002___ 866 CTGATGA-TTCAGC-----AAATGCCGGCAGTTCATC--------CTCCG 901
| || |||||| |||.| |..||||| ||.|.
BPUM_2399___b 686 C----GAGTTCAGCGGGTGAAAAG-----AACTCATCTTCTTCGACTTCC 726
BSNT_04002___ 902 CTAAA-AAAGCCTATATCATGTACGGAGGAACGAA---TCTAAGAAGTGA 947
|.||| |||||.||.||..|.||||..||.||.|| ||.||.|||
BPUM_2399___b 727 CAAAAGAAAGCATACATTGTCTACGATGGCACCAACATTCGAAAAAG--- 773
BSNT_04002___ 948 TGCGTCAACATCAGCTTCAATCGTTGAGCGTGCTGCCAAAGGAGATTCAT 997
.||.||.||.||.|||..|||.|..||..|.||..|.|||||.|.|.|.|
BPUM_2399___b 774 CGCTTCTACTTCTGCTCAAATTGCAGAAAGAGCCACAAAAGGCGCTGCCT 823
BSNT_04002___ 998 ACACCATTACCGGTTCAAAGGGAAG----CTGGTATGAAATAAAGCTTGA 1043
||...||| ||||..|.|.||| ||||||.||..|.| |.|.|
BPUM_2399___b 824 ACCAAATT----GTTCGCACGCAAGGTGACTGGTACGAGGTGA--CGTTA 867
BSNT_04002___ 1044 T--AACGGGCAAACTGCTTATGTAGCCAATTGGGTGGTCCAAACGTCTAA 1091
| |||||...|||||.|||||||||.|..|||||.||.||||||..|||
BPUM_2399___b 868 TCAAACGGCGGAACTGGTTATGTAGCAAGCTGGGTCGTTCAAACGAATAA 917
BSNT_04002___ 1092 AAGCGCAGAAGA-AGCAGGTGA---------ACCGC--CAGTCTCTGATT 1129
|| | |||| |||| |||.| ||| ||||
BPUM_2399___b 918 AA---------ATAGCA-GTGAGGCACCAAGACCACAGCAG-----GATT 952
BSNT_04002___ 1130 CCCCGTCTGGAAACGGCTCTCTAAACAATAAAACGATTATTGTTGACCCG 1179
|..||||.||||..||.|||.||||....|||||||||.||.||||.||.
BPUM_2399___b 953 CATCGTCAGGAACTGGTTCTTTAAAAGGAAAAACGATTGTTCTTGATCCA 1002
BSNT_04002___ 1180 GGACATGGAGGAAAAGACAGCGGAACGATCGGGTATTCG-----GGGAAA 1224
||.|||||.||||||||||||||.|||||.|| || ||....
BPUM_2399___b 1003 GGTCATGGCGGAAAAGACAGCGGCACGATTGG-----CGCAGATGGTGCC 1047
BSNT_04002___ 1225 TTCGAGAAAAACCTGACGATCAAAACGGCAAAACTGCTCGCCAGCAAACT 1274
||.|||||||||.|.||.||||||||.||.||..|.||.||..|||||.|
BPUM_2399___b 1048 TTTGAGAAAAACATTACCATCAAAACAGCCAATTTACTGGCAGGCAAATT 1097
BSNT_04002___ 1275 TAGATCGGCTGGAGCGGATGTATATGTGACACGCCAG-GATGATACCTTT 1323
.||..|..|||||||..||||.|||.|.||..| .|| ||.|||||.|||
BPUM_2399___b 1098 AAGGGCTTCTGGAGCAAATGTTTATTTAACTAG-AAGTGAAGATACTTTT 1146
BSNT_04002___ 1324 GTCAGCCTGCAGTCACGGGTCTCTACCTCTCACTACCGTAACGCTGACGC 1373
.|||||||.||.||..||||..|.||.|||||.|||.|.||.||.||.||
BPUM_2399___b 1147 ATCAGCCTTCAATCGAGGGTTGCGACATCTCATTACAGAAATGCAGATGC 1196
BSNT_04002___ 1374 CTTTATCAGCATTCATTATGACAGCTATGCGGATACCTCTACA------A 1417
.|||||.||..||||||||||.||.|.|..|| ||| || |
BPUM_2399___b 1197 ATTTATTAGTCTTCATTATGATAGTTTTATGG--ACC----CAAGTGTCA 1240
BSNT_04002___ 1418 GAGGCAGTACAGCATATTACTA-CAGTCCTGCCAAAGATCAGGAACTCGC 1466
||||.|||||.||.|||||.|| ||..|.| |.|||||||||.||.|.||
BPUM_2399___b 1241 GAGGAAGTACGGCGTATTATTATCAAGCAT-CAAAAGATCAGCAATTAGC 1289
BSNT_04002___ 1467 ATCAGATGTCCACTCAGAAGTGGTGAAGCGTTCTTCCATTCCAGACCGCG 1516
|.||.|.||.||..|||||||.|..||.||.|||...||.||.||....|
BPUM_2399___b 1290 AACAAACGTTCATACAGAAGTCGCTAAACGCTCTCAAATCCCTGATAAGG 1339
BSNT_04002___ 1517 GCGTATTATTCGGAGATTATTATGTGCTCCGGGAAAACAGACAGCCCGCT 1566
|.||...||||||||||||||.|||..|..|.|||||||.||..||..||
BPUM_2399___b 1340 GTGTGAAATTCGGAGATTATTTTGTCTTAAGAGAAAACAAACGTCCTTCT 1389
BSNT_04002___ 1567 ATGCTGTACGAGCTGGGATATGTAAGCCATCCGCAGGAAGAAGCCAT--T 1614
.|..|.||.||.||.||.|||.|||||.||||.|||||.|||||||| |
BPUM_2399___b 1390 CTTTTATATGAACTCGGTTATTTAAGCAATCCTCAGGAGGAAGCCATCAT 1439
BSNT_04002___ 1615 GTACATAGCAATTCATACCAAGAAAAAGTAACAGATGGGATCGAAAG-CG 1663
.||.|..||| ||.|||||||||..|||.|||||.||.|| ||.|| .|
BPUM_2399___b 1440 CTATAGTGCA--TCTTACCAAGAACGAGTGACAGAAGGAAT-GACAGAAG 1486
BSNT_04002___ 1664 GATTAGAGAAATACTTCCAATAA 1686
|||||.|..||||.||||..|||
BPUM_2399___b 1487 GATTAAAACAATATTTCCGTTAA 1509
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