Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04022 and BPUM_2415

See Amino acid alignment / Visit BSNT_04022 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_04022___ruvB.1.24716.seq
#    -bsequence dna-align/BPUM_2415___ruvB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04022___ruvB-BPUM_2415___ruvB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04022___ruvB-BPUM_2415___ruvB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04022___ruvB
# 2: BPUM_2415___ruvB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1024
# Identity:     741/1024 (72.4%)
# Similarity:   741/1024 (72.4%)
# Gaps:          38/1024 ( 3.7%)
# Score: 2563.5
# 
#
#=======================================

BSNT_04022___      1 ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGAT     50
                     ||||||||||||||||||||||.|||||||||||||||||||||||..||
BPUM_2415___r      1 ATGGATGAACGGCTCGTCTCAACTGAAGCAGACAACCATGAATCAGCCAT     50

BSNT_04022___     51 AGAGCAAAGCCTGAGGCCGCA-AAATCTGGCACAGTATATCGGGCAGCAT     99
                     .||||||||.|||.||||.|| |.|..|.|| ||.||||||||.|||||.
BPUM_2415___r     51 TGAGCAAAGTCTGCGGCCTCAGACACTTAGC-CAATATATCGGTCAGCAA     99

BSNT_04022___    100 AAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACA    149
                     ||.||.||.||.||..|..|.||||||||.||.||.||....|||||.||
BPUM_2415___r    100 AAAGTTAAGGATAACCTCAGTGTGTTTATTGAAGCTGCCCGTATGAGGCA    149

BSNT_04022___    150 GGAGACGCTGGATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAA    199
                     |||.|||||.|||||.||.||..|.|||||.||||||||||||||.||||
BPUM_2415___r    150 GGAAACGCTCGATCACGTCCTCTTATACGGACCGCCCGGACTCGGGAAAA    199

BSNT_04022___    200 CAACGCTTGCTTCGATTGTTGCTAATGAAATGGGAGTGGAAT-------T    242
                     |.||||||||.||.|||.||||.||||||||       ||||       |
BPUM_2415___r    200 CGACGCTTGCGTCAATTATTGCCAATGAAAT-------GAATGTTCAGCT    242

BSNT_04022___    243 GCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTA    292
                     |||.||.|||||.||.||.|||||||||.|.||||||||||||||.||.|
BPUM_2415___r    243 GCGTACAACATCTGGACCAGCGATTGAACGTCCTGGTGATTTGGCGGCGA    292

BSNT_04022___    293 TATTAACGGCGCTGGAACCGGGAGATGTATTATTTATTGATGAAATACAT    342
                     |.||||||.|.||.||.||.||.|||||.||.|||||.||||||||.|||
BPUM_2415___r    293 TTTTAACGTCTCTTGAGCCAGGTGATGTGTTGTTTATAGATGAAATTCAT    342

BSNT_04022___    343 AGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTT    392
                     .|..||||..|.||.||.||.||.||.||||||||.||||||||.||.||
BPUM_2415___r    343 CGCTTGCAGCGTTCAATTGAGGAAGTACTTTATCCAGCAATGGAGGATTT    392

BSNT_04022___    393 TTGCCTGGACATTGTGATTGGCAAAGGCCCAT-CTGCCCGCTCGGTTCGC    441
                     |||..|.||.||.||.||||||||||| ..|| |.||.|||||.||.||.
BPUM_2415___r    393 TTGTTTAGATATCGTCATTGGCAAAGG-AGATACAGCGCGCTCTGTACGG    441

BSNT_04022___    442 CTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACGAGGGTGGGGCT    491
                     ||.||..|.|||||.|||||.||.||.||.||.||.||..|.||.|||||
BPUM_2415___r    442 CTTGATTTACCGCCATTTACACTTGTAGGTGCTACAACCCGTGTTGGGCT    491

BSNT_04022___    492 TTTGACGGCTCCTTTAAGAGACAGATTCGGCGTA-ATGTCTCGCCTTGAG    540
                     |||.||.||.||..|..|.|||||.||.||.||| ||| |..|..|.||.
BPUM_2415___r    492 TTTAACAGCGCCGCTTCGTGACAGGTTTGGGGTACATG-CAAGATTGGAA    540

BSNT_04022___    541 TACTATACACAAGAAGAACTGGCGGATATTGTCACAAGAACCGCTGATGT    590
                     ||||||...|||..|||..||||..|.|||||..|||||||.||.||..|
BPUM_2415___r    541 TACTATGAGCAAAGAGATTTGGCTCACATTGTTTCAAGAACAGCAGAGCT    590

BSNT_04022___    591 ATTCGAGGTTGAGATTGATAAACCGTCGGCTC-----TTGAAATTGCAAG    635
                     .||||||.|||..||||||    |.|| ||||     ..||.||.|||||
BPUM_2415___r    591 GTTCGAGATTGGAATTGAT----CTTC-GCTCAGCCGAAGAGATCGCAAG    635

BSNT_04022___    636 AAGATCGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGC    685
                     |.|.||..|.||.|||||..|.||.||.||.||.||.||.|||||.||..
BPUM_2415___r    636 ACGTTCCCGCGGTACGCCGAGGGTTGCCAATCGTCTACTCAGAAGAGTAA    685

BSNT_04022___    686 GCGATTTCGCCCAAGTGCTGGGTGACAGCA--GGATTACGGAAGACATTT    733
                     |.|||||.|||||.|||||.|  ||.|.||  .||||||.||.||||||.
BPUM_2415___r    686 GAGATTTTGCCCAGGTGCTTG--GAAATCATTCGATTACCGAGGACATTG    733

BSNT_04022___    734 CTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGTCTCGGTTTGGATCAT    783
                     |..|..||||.||.|||||.|||||.||.|||...||.|||.|.||||||
BPUM_2415___r    734 CGGAAGATGCCCTTGAGCGCCTTCAAGTCGACAAGCTTGGTCTTGATCAT    783

BSNT_04022___    784 ATTGATCATAAGCTGCTGATGGGCATGATCGAAAAATTCAACGGCGGCCC    833
                     ||.||||||||||||||..|..|.|||||.||||||||.|..|||||.||
BPUM_2415___r    784 ATCGATCATAAGCTGCTTTTAAGTATGATTGAAAAATTTAGAGGCGGTCC    833

BSNT_04022___    834 AGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATACGA    883
                     .||.||.|||||.||.||.|||||.||.||.||.||.|||||.|||||||
BPUM_2415___r    834 TGTTGGGCTTGACACAATCTCAGCGACAATTGGAGAAGAATCACATACGA    883

BSNT_04022___    884 TTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGA    933
                     |||||||.||.||.|||||.|||.|.|||||||||||.||..||||||||
BPUM_2415___r    884 TTGAAGATGTGTACGAACCGTATTTACTGCAAATTGGTTTCCTACAAAGA    933

BSNT_04022___    934 ACGCCGCGTGGAAGGATCGTGACACCGGCCGTTTATCATCATTTCCAAAT    983
                     ||.||..|.|||.|..||||.|||...|..|..|||.|.||.||.|||||
BPUM_2415___r    934 ACACCAAGAGGACGAGTCGTCACAAGAGAAGCGTATGAACACTTTCAAAT    983

BSNT_04022___    984 GGAGGCTCCCCGAT--ATGACTGA   1005
                     |||||.|  |||||  .|||||||
BPUM_2415___r    984 GGAGGTT--CCGATTCGTGACTGA   1005


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