Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01495 and BPUM_2421

See Amino acid alignment / Visit BSNT_01495 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:02
# Commandline: needle
#    -asequence dna-align/BSNT_01495___thiC.1.24716.seq
#    -bsequence dna-align/BPUM_2421___thiC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01495___thiC-BPUM_2421___thiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01495___thiC-BPUM_2421___thiC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01495___thiC
# 2: BPUM_2421___thiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1856
# Identity:    1300/1856 (70.0%)
# Similarity:  1300/1856 (70.0%)
# Gaps:         181/1856 ( 9.8%)
# Score: 4539.0
# 
#
#=======================================

BSNT_01495___      1 ATGCAA------AACAAT-TCAGTGCAGCAAGCCAACATTTC---CATTA     40
                     |||.||      ||.||| ||           ||||||..||   |.|||
BPUM_2421___t      1 ATGAAAGAAAAGAAAAATATC-----------CCAACAACTCAATCGTTA     39

BSNT_01495___     41 -TGTCAAGTTTTTCAGGCAGCAAGAAGGTATACGTGGAGGGTTCTTCTTC     89
                      |.|||||.|||...||||||...|||||.||.|.|.|.||.||.....|
BPUM_2421___t     40 TTATCAAGCTTTGACGGCAGCCGAAAGGTGTATGAGAAAGGGTCAAGACC     89

BSNT_01495___     90 GGACATCCAAGTGCCGATGAGGGAGAT---CCTATTGAGTCCGACG---A    133
                     .|||||...||||||.|..||.||.||   |||         .|||   |
BPUM_2421___t     90 TGACATTTTAGTGCCAAAAAGAGAAATTGCCCT---------CACGCAAA    130

BSNT_01495___    134 CGG-GATCGTTCGGCGAAG--AGG--------AAAACGCGCCTGTGCGTG    172
                     ||| ||        ||.||  |||        ||||.|..||..|.||||
BPUM_2421___t    131 CGGTGA--------CGCAGGCAGGAATGATTCAAAATGAACCAATTCGTG    172

BSNT_01495___    173 TCTATGATACAAGCGGACCGTATACGGACCCTGAAG--TAACCATTAAT-    219
                     |.||.|||||.||.||.||.||.|||||   || ||  |..||||  || 
BPUM_2421___t    173 TGTACGATACGAGTGGTCCTTACACGGA---TG-AGCATGCCCAT--ATC    216

BSNT_01495___    220 -AT---TCAAGAAGGATTAA---------AGCCGCTCCGCCAAAAATGGA    256
                      ||   .|||.|.||.||||         |||.||          ||||.
BPUM_2421___t    217 GATGTGACAAAAGGGCTTAACCGTCTGAGAGCAGC----------ATGGG    256

BSNT_01495___    257 TCACAGAGCGCGGTGACGTGGAAGAG-TATGAAGGTCGGGCTATAAAACC    305
                     ||..|||..|.||.||....||| || ||||||||.||...|.|||||||
BPUM_2421___t    257 TCGAAGAAAGGGGAGATACAGAA-AGCTATGAAGGGCGCCATGTAAAACC    305

BSNT_01495___    306 AGAAGATAACGGTTA------TAAAAA-----------AGCAAATCCAAA    338
                     .|||||||||||.||      ||.|||           ||||.||.||.|
BPUM_2421___t    306 TGAAGATAACGGCTATCGCTCTAGAAACGGGTCTCATCAGCATATTCATA    355

BSNT_01495___    339 CGTAAGCTACCCAGGA-TTAAAGCGGAAACCGCTGAGGGCGAAGGCAGGT    387
                     |            .|| ||..|.|..||.|||||..|.||.||...||||
BPUM_2421___t    356 C------------TGATTTTCATCATAAGCCGCTTCGTGCAAAACAAGGT    393

BSNT_01495___    388 CAAAATGTCACACAAATGTACTATGCAAAAAAGGGGATCATTACACCTGA    437
                     .....|||.||.||||||.|||||||||||||.||.||..|.||.|||||
BPUM_2421___t    394 GCCTGTGTGACGCAAATGCACTATGCAAAAAAAGGTATTGTCACGCCTGA    443

BSNT_01495___    438 GATGGAATTTATCGCCATTCG--------TGAGCATGTGTCTCCTGAATT    479
                     .|||||.||.||||||.|..|        |.|||        |||||.||
BPUM_2421___t    444 AATGGAGTTCATCGCCTTAAGAGAAGGGCTAAGC--------CCTGAGTT    485

BSNT_01495___    480 CGTCAGAGACGAGGTAGCCAGCGGCCGGGCGATTATTCCTTCAAACATTA    529
                     |||.|||||.||.||.||||||||..|.||..|.|||||..|.||.||||
BPUM_2421___t    486 CGTGAGAGAGGAAGTTGCCAGCGGAAGAGCTGTCATTCCAGCGAATATTA    535

BSNT_01495___    530 ATCACCCTGAAAGTGAGCCAATGATTATCGGCCGGAATTTTCATGTGAAG    579
                     |.||.|||||||||||.||.|||||||||||..|.|||||||||||.||.
BPUM_2421___t    536 ACCATCCTGAAAGTGAACCGATGATTATCGGAAGAAATTTTCATGTCAAA    585

BSNT_01495___    580 ATTAATGCAAATATCGGGAATTCAGCGGTTACGTCATCCATTGAAGAAGA    629
                     ||.|||||.||.||.||.||||||||.||.||.|||||||||||.|||||
BPUM_2421___t    586 ATCAATGCGAACATTGGCAATTCAGCTGTGACATCATCCATTGATGAAGA    635

BSNT_01495___    630 AGTGGAAAAAATGACGTGGGCCATCCGCTGGGGAGCGGATACGATGATGG    679
                     |||.|||||||||||.|||||.|||.|.|||||..|.||.||.|||||||
BPUM_2421___t    636 AGTTGAAAAAATGACATGGGCGATCAGATGGGGGACAGACACCATGATGG    685

BSNT_01495___    680 ATCTCTCTACCGGAAAAGATATTCATACGACGCGTGAATGGATTATCCGC    729
                     ||||.|||||.|||||.|||||||||||.|||.|.||||||||.||.||.
BPUM_2421___t    686 ATCTGTCTACAGGAAAGGATATTCATACAACGAGGGAATGGATCATACGG    735

BSNT_01495___    730 AATTGCCCCGTGCCTGTGGGAACTGTTCCGATTTATCAGGCGCTTGAAAA    779
                     |||||.||.||.||.||.||.||.|||||.|||||||||||||||||.||
BPUM_2421___t    736 AATTGTCCAGTCCCAGTAGGCACCGTTCCCATTTATCAGGCGCTTGAGAA    785

BSNT_01495___    780 AGTAAACGGCGTAGCGGAGGATTTAACGTGGGAGATTTATCGTGATACGC    829
                     |||.||.|||||.||.||.|||||.||||||||..|.||..|.||.||..
BPUM_2421___t    786 AGTGAATGGCGTGGCAGAAGATTTGACGTGGGACGTGTACAGAGACACAT    835

BSNT_01495___    830 TAATCGAGCAGGCAGAGCAGGGAGTGGATTATTTTACGATTCACGCGGGT    879
                     ||||.||.||.||||||||.|||||.||.||.||.||||||||.|||||.
BPUM_2421___t    836 TAATTGAACAAGCAGAGCAAGGAGTAGACTACTTCACGATTCATGCGGGC    885

BSNT_01495___    880 GTTTTGCTTAGGTATGTACCGCTGACTGCCAAACGGACAACTGGTATTGT    929
                     ||...|.|.||||||.|.||.|||||.|.|.|.|||...|||||||||||
BPUM_2421___t    886 GTGCGGTTAAGGTATATTCCTCTGACAGTCGACCGGGTGACTGGTATTGT    935

BSNT_01495___    930 GTCACGCGGGGGAGCGATTATGGCGCAGTGGTGTCTGGCTCATCATCAAG    979
                     .|||.|.||.||.||.||||||||...|||||||||.|||||||||||||
BPUM_2421___t    936 TTCAAGAGGCGGTGCCATTATGGCAAGGTGGTGTCTTGCTCATCATCAAG    985

BSNT_01495___    980 AAAGCTT--TTTATACACACATTTTGAAGAAATCTGTGAGATTATGAAAA   1027
                     |.|..||  |||||||.|||  ||||||||.||.||||||||||||||||
BPUM_2421___t    986 AGAATTTCCTTTATACCCAC--TTTGAAGACATTTGTGAGATTATGAAAA   1033

BSNT_01495___   1028 CGTATGATATTGCTTTCTCTCTTGGGGATGGTTTGCGTCCCGGATCAATT   1077
                     ||||||||||||||||.||.|||||.|||||..|..|.||.||||||||.
BPUM_2421___t   1034 CGTATGATATTGCTTTTTCACTTGGAGATGGGCTTAGACCAGGATCAATA   1083

BSNT_01495___   1078 GCTGATGCCAATGACGAAGCGCAGTTTGCTGAATTAGAGACGCTTGGAGA   1127
                     ||||||||||||||.||||||||||||||.||..||||.|||.|.||.||
BPUM_2421___t   1084 GCTGATGCCAATGATGAAGCGCAGTTTGCAGAGCTAGAAACGTTAGGTGA   1133

BSNT_01495___   1128 GCTGACGCAAATTGCCTGGAAGCATGATGTTCAGGTGATGATTGAGGGTC   1177
                     ..||||..|.||.||.|||||.||||||||.||||||||||||||.||.|
BPUM_2421___t   1134 ATTGACAGAGATCGCTTGGAAACATGATGTACAGGTGATGATTGAAGGAC   1183

BSNT_01495___   1178 CTGGACATGTTCCGATGCATAAAATCAAAGAGAACGTCGATAAACAAATG   1227
                     |||||||||||||.|||.|||||||||||||.||.||.||.||.||||||
BPUM_2421___t   1184 CTGGACATGTTCCAATGGATAAAATCAAAGAAAATGTGGACAAGCAAATG   1233

BSNT_01495___   1228 GACATTTGTAAAGAAGCGCCTTTTTACACATTGGGGCCGTTGACAACGGA   1277
                     ||.|||||.|||||.||.||.|||||.|||||.|||||..|.|||||.||
BPUM_2421___t   1234 GAGATTTGCAAAGAGGCACCATTTTATACATTAGGGCCTCTTACAACAGA   1283

BSNT_01495___   1278 TATTGCTCCGGGATATGACCATATTACTTCAGCGATCGGAGCGGCGATGA   1327
                     ||||||||||||||||||.||||||||.||.||.|||||.||.||.||||
BPUM_2421___t   1284 TATTGCTCCGGGATATGATCATATTACATCTGCCATCGGCGCAGCTATGA   1333

BSNT_01495___   1328 TCGGTTGGTACGGGACAGCAATGCTTTGTTATGTAACGCCGAAGGAGCAT   1377
                     ||||.|||||.||.|||||.|||||.||||||||||||||.|||||||||
BPUM_2421___t   1334 TCGGCTGGTATGGAACAGCGATGCTATGTTATGTAACGCCAAAGGAGCAT   1383

BSNT_01495___   1378 TTGGGGCTGCCAAACCGTGATGATGTTCGTGAAGGAGTCATTACATATAA   1427
                     ||.||||||||.|||...||.|||||..|.|||||.||.||..|.|||||
BPUM_2421___t   1384 TTAGGGCTGCCGAACAAAGAAGATGTAAGAGAAGGTGTGATCGCTTATAA   1433

BSNT_01495___   1428 GATCGCTGCGCACGCTGCGGACCTTGCAAAAGGGCATCCCGGAGCGCAAA   1477
                     .||.||.||.||.|||||.||.||.||.|||||.|||||.|..||.||||
BPUM_2421___t   1434 AATTGCCGCTCATGCTGCTGATCTAGCGAAAGGACATCCTGCTGCTCAAA   1483

BSNT_01495___   1478 TCCGGGATGATGCGTTATCGAAAGCCCGTTTTGAATTCCGCTGGCGGGAT   1527
                     ..||.||||||||.|||||||||||..|.||||||||..|.|||||.||.
BPUM_2421___t   1484 AGCGTGATGATGCTTTATCGAAAGCAAGGTTTGAATTTAGATGGCGTGAC   1533

BSNT_01495___   1528 CAGTTTAATTTATCTCTTGATCCGGAGAGAGCCCTTGAATACCATGATGA   1577
                     ||.||.||..|.||.||||||||.||.|||||..|.|..|.|||||||||
BPUM_2421___t   1534 CAATTCAACCTGTCACTTGATCCAGAAAGAGCGATGGCGTTCCATGATGA   1583

BSNT_01495___   1578 AACCCTGCCTGCTGAAGGAGCAAAAACCGCTCACTTTTGTTCCATGTGCG   1627
                     |||..|||||||.|||||.||.||.||.||.||.|||||.||.|||||||
BPUM_2421___t   1584 AACATTGCCTGCCGAAGGCGCTAAGACTGCCCATTTTTGCTCGATGTGCG   1633

BSNT_01495___   1628 GTCCGAAATTTTGCAGCATGAGAATTTCACAGGATATTCGGGATTATGCG   1677
                     |.|||||.|||||||||||||.||||||.||.||||||||          
BPUM_2421___t   1634 GACCGAAGTTTTGCAGCATGAAAATTTCCCATGATATTCG----------   1673

BSNT_01495___   1678 AAGAAAAACGATCTCAGTGAAGCAGAAGCCATAAATAAAG-GATTAAAAG   1726
                                   ||.|.||.||||||...|.||.|||| |||  ..||
BPUM_2421___t   1674 --------------CAATCAATCAGAAGAAGTGAAAAAAGAGAT--GGAG   1707

BSNT_01495___   1727 AA-AAAGCAAAAGAGTTTGTC----GATACGGGAAGC--AATTTATATCA   1769
                     || ||.||.||.||||||.||    ||    ||||||  |||.||| |||
BPUM_2421___t   1708 AAGAAGGCGAAGGAGTTTATCAGCGGA----GGAAGCCAAATATAT-TCA   1752

BSNT_01495___   1770 --ATAA   1773
                       .|||
BPUM_2421___t   1753 TCCTAA   1758


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