Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04044 and BPUM_2424
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_04044___safA.1.24716.seq
# -bsequence dna-align/BPUM_2424___safA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04044___safA-BPUM_2424___safA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04044___safA-BPUM_2424___safA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04044___safA
# 2: BPUM_2424___safA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1468
# Identity: 753/1468 (51.3%)
# Similarity: 753/1468 (51.3%)
# Gaps: 527/1468 (35.9%)
# Score: 1932.5
#
#
#=======================================
BSNT_04044___ 1 TTGAAAATCCATATCGTTCAAAAAGGTGATTCGCTCTGGAAAATAGCTGA 50
||||||||.|||||.||.||||||||.||.||.||.||||||||..|..|
BPUM_2424___s 1 TTGAAAATTCATATTGTGCAAAAAGGAGACTCCCTTTGGAAAATTTCAAA 50
BSNT_04044___ 51 AAAGTACGGAGTCGATGTTGAGGAAGTGAAAAAACTCAATACACAGCTTA 100
.||.|||||||||||..||.|.|||.||||||||||.|||.|||||||.|
BPUM_2424___s 51 GAAATACGGAGTCGACTTTCAAGAATTGAAAAAACTAAATTCACAGCTCA 100
BSNT_04044___ 101 GCAATCCAGACTTAATCATGCCTGGAATGAAAATAAAAGTGCCGTC-AGA 149
|.||||||||.||.||||||||.||.|||||.||.||..|.||.|| ||
BPUM_2424___s 101 GTAATCCAGATTTGATCATGCCGGGTATGAAGATCAAGATTCCATCTAG- 149
BSNT_04044___ 150 AGGAGTCCCGGTCAGAAAAGAGC--CA-AAAGCGGGCAAAAGTCCTGC-- 194
.||.||.||.||.|.||.|||.| || ||| |||||||...|||
BPUM_2424___s 150 TGGTGTTCCTGTAAAAACAGATCATCAGAAA----GCAAAAGAAATGCCA 195
BSNT_04044___ 195 -GGCCGGGAGTGTGAAGCAAGAACATCCATATGCGAAAGAGAAGCCTAAA 243
.||| |.||||||||||.||||.||||||.|||||.|||
BPUM_2424___s 196 AAGCC-----------GAAAGAACATCCGTATGTGAAAGAAAAGCCAAAA 234
BSNT_04044___ 244 TCCGTTGTCG---ATGTAGAAGACACAAAGCCGAAAGAAAAGAAGTCCA- 289
|.||||| |.||..||||.||.||.|||||||||||| |||
BPUM_2424___s 235 ---GATGTCGTGCAAGTGCAAGATACGAAACCGAAAGAAAAG----CCAA 277
BSNT_04044___ 290 ---------TGCCGTATGTCCCGCCGATGCCTAATTT---GCAGGAAAAT 327
|.||.|||||.|||||..||||.||..| ||||..|
BPUM_2424___s 278 ATGAACCTGTCCCTTATGTACCGCCAGTGCCAAAAATCGAGCAGCCA--- 324
BSNT_04044___ 328 GTGTACCCTGAAGCTGATGTGAACGATTATTATGATATGAAACAGCTTTT 377
||.|..||..|||.||||||||||.|||||.| ||...|.||.|.
BPUM_2424___s 325 GTTTTTCCGCAAGTTGATGTGAACTATTATCA------GACCAATCTCTA 368
BSNT_04044___ 378 CCAGCCTTGGTCGCCTCCT---AAACCGGAGGAGCCGAAAAAACATCATG 424
||||||.|...|||||||| ||| |||.|||||||||
BPUM_2424___s 369 CCAGCCATTCACGCCTCCTCCCAAA------------AAAGAACATCATG 406
BSNT_04044___ 425 ------------ACG----------GAAATAT-----------------G 435
||| ||||.|| |
BPUM_2424___s 407 AGAAAAAAGATCACGTTCATGAAAAGAAAGATCATGTTCATGACAAAAAG 456
BSNT_04044___ 436 GATCAT-------ATGTATCA-TATG----------------------CA 455
|||||| |||| ||| |||| ||
BPUM_2424___s 457 GATCATAAAGATCATGT-TCACTATGAGAACAAGGAGCATAAAGATCACA 505
BSNT_04044___ 456 A-GACCA--------ATTTCCA---------------------------- 468
| ||||| |||||||
BPUM_2424___s 506 AGGACCACAAGGACCATTTCCATCATGAAAATAAAGGTCATTTAAAAGAT 555
BSNT_04044___ 469 ------------------------------------------CAACAGGA 476
|||.||||
BPUM_2424___s 556 GAAGTGGCAAAGGGATATGATCCATTTATTCATATTCCGCATCAAAAGGA 605
BSNT_04044___ 477 ----GGCTATGAGTAATATGGAAAATGCA----AATTATCCGAATATGCC 518
|||.|.| ||||||| ||| |||||.||.||..|.||
BPUM_2424___s 606 GGAGGGCAAAG----ATATGGA----GCACAGCAATTACCCAAACCTTCC 647
BSNT_04044___ 519 TAAT---------ATGCCAA-------AGGCGCCAGAGGTAGGCGG---- 548
|||| |||||.| ||||| |||.||||||.||
BPUM_2424___s 648 TAATTTCCCGCAAATGCCGAATGTAGGAGGCG-CAGCGGTAGGGGGAATG 696
BSNT_04044___ 549 --TGTAGAA-GAGGAAAACGTTCATCA----CACAGTTCCGAAT-ATGCC 590
|| |||| .||||..| |||||| ||| |.|.|| |||.|
BPUM_2424___s 697 GCTG-AGAATAAGGAGCA---TCATCACCATCAC----CAGCATCATGAC 738
BSNT_04044___ 591 G---ATGCCGGCTGTTCAGCCTTATTATCATTATCCGGCTCATTTCGTAC 637
| ||| |.|||||||||..|||| |.|||||.|.|.|
BPUM_2424___s 739 GCATATG----------ATCCTTATTATGGTTAT---GGTCATTACATGC 775
BSNT_04044___ 638 C------GTGTCC---------------GGTGCCTGTTTCGCCAATTTTT 666
| ||.||| |||.||.|..|||||||||||.
BPUM_2424___s 776 CAGCGATGTATCCATATCCGCAGCAAATGGTACCAGCGTCGCCAATTTTA 825
BSNT_04044___ 667 CCAGGATCAGGATTATGCTATCCGTACTATCCGGCACAAGC----TTAT- 711
|||||||||||..|.|||||.| ||.||| ||| ||||
BPUM_2424___s 826 CCAGGATCAGGTCTTTGCTACC----CTGTCC------AGCCGTATTATC 865
BSNT_04044___ 712 -CCAATGCATCCGATGC---ATGGATA-CCAGC-CAGGCTTTGTATCGCC 755
|||...||| ||||| ||..||| ||||| |||.|.|..||| ||
BPUM_2424___s 866 ACCATCACAT--GATGCCATATCCATACCCAGCGCAGCCATATTAT--CC 911
BSNT_04044___ 756 TCAGTAT---GACCCGGGTTAT----GAAAACCAGCATCATGAAAACAGC 798
|..|||| |..||.|.|||| ||.|| |||.|||||
BPUM_2424___s 912 TGCGTATCAAGCGCCAGCTTATTACGGAGAA----CATTATGAA------ 951
BSNT_04044___ 799 CATCACGGACATTACGGTTCATACGGTGCGCCGCAATACGCATCTCCGGC 848
|||||.|.|.||.|.|| |||||.|.|||
BPUM_2424___s 952 CATCATGCAAATGATGG----------------------GCATCACTGGC 979
BSNT_04044___ 849 TTATGGATCTCCGTATGGACATATGCCGTATGGCCCTTATTACGGCACTC 898
|.|.||.|||| ||| |||.|||.| |..|||..|
BPUM_2424___s 980 ------ACCACCATATG--CAT---CCGAATGCC-------AATGCAAAC 1011
BSNT_04044___ 899 CCCAA-GT-AATGGGAGCAT--ACCAGCCTGCTGCGGCT--------CAT 936
.|||| || ||||.||.|.| |.|| .|||| .||
BPUM_2424___s 1012 GCCAATGTCAATGCGAACGTGAATCA--------AGGCTTTTATCCAAAT 1053
BSNT_04044___ 937 GGTT-ACATGCCATACAAAGATCAT------GACGACTGCGGCTGTGACG 979
|.|| |.||| |||.|.|| ||.||||||||.|||||.|
BPUM_2424___s 1054 GTTTCAAATG-------AAGCTTATGGCAAGGAAGACTGCGGATGTGATG 1096
BSNT_04044___ 980 GTG---------ATCATCAGCC---------ATATT-------TCTCTGC 1004
.|| |.|||||.|| |.||| || |||.
BPUM_2424___s 1097 ATGGCATGAAGCAGCATCAACCGTGGCCAGGACATTACCCGAATC-CTGT 1145
BSNT_04044___ 1005 GCC---TGGCCATTCGGGAATGGGAGCTTATGGAAGC----CCTAATATG 1047
.|| |||||| ||||||||||||| ..||| |||.|||||
BPUM_2424___s 1146 ACCTTATGGCCA------AATGGGAGCTTAT-CCAGCGCAGCCTTATATG 1188
BSNT_04044___ 1048 CCATATGGCACAGCTAACCCAAATCCAAACCCATATTCGGCAGGAGTTTC 1097
| |.|||||| .|||| ||
BPUM_2424___s 1189 C---------------------------AGCCATAT---CCAGG----TC 1204
BSNT_04044___ 1098 TATGCCAATGACGAATCAGCCTTCTGTAA-ACCAAATGTTTGGCCGGCCG 1146
||||.| .||.||.|| ||||.| |
BPUM_2424___s 1205 -------------AATCTG-TTTTTGCAAGACCAGA-------------G 1227
BSNT_04044___ 1147 GAAGAAGAAAATGAGTGA 1164
|||||.|||.|.||||.|
BPUM_2424___s 1228 GAAGACGAAGAAGAGTAA 1245
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