Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04046 and BPUM_2426
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_04046___nadC.1.24716.seq
# -bsequence dna-align/BPUM_2426___nadC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04046___nadC-BPUM_2426___nadC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04046___nadC-BPUM_2426___nadC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04046___nadC
# 2: BPUM_2426___nadC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 937
# Identity: 577/937 (61.6%)
# Similarity: 577/937 (61.6%)
# Gaps: 140/937 (14.9%)
# Score: 1498.0
#
#
#=======================================
BSNT_04046___ 1 ATGAATCATTTACAGCTGAAAAAATTACTGAATCACTTTTTTC-TTGAGG 49
|||.|.|.|||||||.|.|||.||.|.||||..|| ||||||| ..||||
BPUM_2426___n 1 ATGGAACGTTTACAGTTAAAACAAATGCTGACGCA-TTTTTTCGCAGAGG 49
BSNT_04046___ 50 ATATTGGGACAGGGGATCTTACATCGCAGTCT------ATTTTTGGAGAA 93
|||||||....||.|||.| || ||| || ||||||||||||
BPUM_2426___n 50 ATATTGGTTTTGGAGATGT---AT--CAG-CTGATGGCATTTTTGGAGAA 93
BSNT_04046___ 94 CAG--AGCTGTGA--AGCGGAGATTGTTGCAAAGTCAGAGGGTATTTTTG 139
.|| || || |||..|.||..|.|||||...|..||||.|.||.|
BPUM_2426___n 94 AAGAAAG----GAACAGCCTATATCATCGCAAAACAATCGGGTGTATTGG 139
BSNT_04046___ 140 CAGG------AG-CAGCGATCATAAAAGAAGGCTTTTCGTTATTGGACGA 182
|||| || ||..|| ||||..|.|..|| .|..||.|.||
BPUM_2426___n 140 CAGGTTCTCAAGTCATTGA-CATAGGATACCGC------CTGCTGAATGA 182
BSNT_04046___ 183 AAATGTTC-GAATCA------TTTTACACAAAAAAGATGGGGACAT--GT 223
|.|..||| ||.|.| |||| |||||.||.|| || ||
BPUM_2426___n 183 ACAGATTCAGACTGAGTTGTTTTTT-------AAAGAAGGTGA-ATGGGT 224
BSNT_04046___ 224 TGCATAAAGGTGAAGTGATTGCCGAGTTACACGGTCCCG-CAGCTGCGCT 272
| |||..|||.|.|||..|.||..|..||.|.||.||.| ||||..|
BPUM_2426___n 225 T-CATTCAGGGGCAGTTTTAGCGAAAATAAAAGGACCAGTCAGCGAC--- 270
BSNT_04046___ 273 CCTTT-----CAGGAGAGCGGGTCGTATTAAATCTTATTCAGAGGCTGTC 317
|| .||||||.||||||.|.||||||.|..|.|||.|..||.|
BPUM_2426___n 271 ---TTATTAAAAGGAGAACGGGTCATTTTAAATGTCTTGCAGCGCATGAC 317
BSNT_04046___ 318 AGGAATTGCGACAATGACAAGAGAGGCTGTTCGGTGTCTGGATGATGAAC 367
|||.||.||.||..|.|||...||.||.||.|.| .|||.|.|
BPUM_2426___n 318 AGGTATCGCCACTTTAACACATGAAGCAGTACAG--------CGATTAGC 359
BSNT_04046___ 368 --------AGATTAAAATTTGTGACACGAGAAAAACAACACCGGGGCTCA 409
.|||||..||||||||.|||||||||||.||.||.||..|..
BPUM_2426___n 360 GGACCCGTCGATTACGATTTGTGATACGAGAAAAACGACGCCTGGCTTGC 409
BSNT_04046___ 410 GAATGCTGGAGAAATATGCTGTCAGAG-CCGGCGGCGGGTATAATCATCG 458
|.|||.|.||||||||.|||||.| || |.||.||.||..|.||||||||
BPUM_2426___n 410 GTATGTTAGAGAAATACGCTGTGA-AGACAGGAGGGGGAAAAAATCATCG 458
BSNT_04046___ 459 ATTCGGTTTGTATGACGGCATCATGATTAAAGATAATCATATCGCAGCAT 508
.|||||.||.|..||.||..|.|||||||||||.||||||||.||.||||
BPUM_2426___n 459 CTTCGGCTTATCAGATGGGGTGATGATTAAAGACAATCATATTGCCGCAT 508
BSNT_04046___ 509 GCGGCTCTATTTTAGAGGCATGCA-AAAAAGCCCGTCAGGCC----GCAG 553
|.|||||.|||...||.|| ||.| |.||||| .|||.| ||.|
BPUM_2426___n 509 GTGGCTCCATTCGTGAAGC-TGTAGAGAAAGC----AAGGGCATATGCCG 553
BSNT_04046___ 554 GGCACATGGTAAATATCGAGGTGGAAATTGAAACGGAGGGACAGCTGCGG 603
|.||.|||||.||.||.||.||||||||||||.|.||....|||||...|
BPUM_2426___n 554 GTCATATGGTGAAAATTGAAGTGGAAATTGAATCAGAAACGCAGCTAAAG 603
BSNT_04046___ 604 GAAGCAATTGCAGCTGGCGCGGATGTTATTATGTTTGACAACTGTCCGCC 653
|||||.||||..||....||.|||||.||.||||||||||||||..|.||
BPUM_2426___n 604 GAAGCCATTGATGCAAAGGCCGATGTCATCATGTTTGACAACTGCTCTCC 653
BSNT_04046___ 654 TGATACGGTCCGT----CATTTT--GCAAAGCTCACACCGGATCATATAA 697
|.|||.| || |.|||| .|||| |.||.|||| |.|.
BPUM_2426___n 654 --AGACGAT--GTAAAACGTTTTAAACAAA--TGACGCCGG-----AGAC 692
BSNT_04046___ 698 AA-----ACTGAAGCCTCCGGCGGGATTACGTTAGAATCTTTGCCTGCTT 742
|| ||.||.||.||.||.||.||.|||.||||..|.|||||...||
BPUM_2426___n 693 AATTCTGACCGAGGCTTCAGGAGGCATCACGCTAGAGACATTGCCAAGTT 742
BSNT_04046___ 743 TTAAAGGGACGGGTG-TGAATTATATTTCATTAGGATTTCTGACTCATTC 791
..|.||||||.|||| |||..| ||||||..|.||.||||||||.||.||
BPUM_2426___n 743 ACAGAGGGACAGGTGTTGACCT-TATTTCGCTTGGTTTTCTGACACACTC 791
BSNT_04046___ 792 CG-TCAA------AAGTTTAGATATCAGCATGGATGTTACGTTATCAAAT 834
.| ||.| .|.||||| |||.|..|||||..||| ||.||.||
BPUM_2426___n 792 TGCTCCAGCATTTGATTTTAG-TATGAATATGGAATTTA-GTCATAAA-- 837
BSNT_04046___ 835 GAATCTGTGGAGGAATGCC-GTTATGTCAATTCTTGA 870
||.||| ||| .|.||||||.|.|||||
BPUM_2426___n 838 --------GGGGGA--GCCACTCATGTCACTGCTTGA 864
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