Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04056 and BPUM_2433
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_04056___spo0B.1.24716.seq
# -bsequence dna-align/BPUM_2433___spo0B.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04056___spo0B-BPUM_2433___spo0B.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04056___spo0B-BPUM_2433___spo0B.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04056___spo0B
# 2: BPUM_2433___spo0B
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 622
# Identity: 407/622 (65.4%)
# Similarity: 407/622 (65.4%)
# Gaps: 80/622 (12.9%)
# Score: 1229.5
#
#
#=======================================
BSNT_04056___ 1 ATGAAGGATGTTTCAAAAAATCAAGAAGAAAATATAAGCGACACG--GCA 48
|||.|.||..|.||||..||.|||.|.|||||..||| ..|||| |||
BPUM_2433___s 1 ATGGAAGAGATATCAAGTAAACAAAACGAAAAATTAA--CTCACGTTGCA 48
BSNT_04056___ 49 TTAACAAACGAACTGATTCATCTGCTTGGCCATTCCCGGCATGATTGGAT 98
||||||||.|||.||||..|||||||..|.|.|||..|.|||||.|||||
BPUM_2433___s 49 TTAACAAATGAATTGATCTATCTGCTCAGTCGTTCAAGACATGACTGGAT 98
BSNT_04056___ 99 GAATAAGCTGCAGCTGATTAAAGGAAACTTAAGCTTACAGAAGTATGACC 148
||||||..||||||||||.||.||.|||||.|..|||.|.||.|||||||
BPUM_2433___s 99 GAATAAATTGCAGCTGATCAAGGGCAACTTGACATTAGAAAAATATGACC 148
BSNT_04056___ 149 GTGTCTTTGAAATGATTGAAGAAATGGTTATAGACGCAAAGCACGAATCA 198
||||.||||||||.||.|||||||||||.||.||.|||.||||.|||||.
BPUM_2433___s 149 GTGTGTTTGAAATTATAGAAGAAATGGTCATTGAAGCACAGCATGAATCC 198
BSNT_04056___ 199 AAGCTCTCAAACCTGAAAACACCGCATTTGGCGTTTGATTTTCTTACGTT 248
||.||||||||..|.||||..||.||.|||||.|.|.|.|||||.||.||
BPUM_2433___s 199 AAACTCTCAAATTTAAAAATTCCCCAATTGGCCTATTACTTTCTAACATT 248
BSNT_04056___ 249 TAATTGGAAAACCCATTATATGACGCTTGAATATGAAGTTCTCGGAGAAA 298
|||||||.|..|.||||.|||.||.||.|||||||||||.||.||.||||
BPUM_2433___s 249 TAATTGGGAGTCGCATTTTATCACCCTAGAATATGAAGTGCTTGGTGAAA 298
BSNT_04056___ 299 TTAAGGATTTGTCGGCTTATG-ATCAAAAGCTGGCGAAACTG-ATGAGA- 345
.....||.||.||.||.|||| ||| ..||||| ..|||.| ||.|.|
BPUM_2433___s 299 CCCGAGACTTATCAGCATATGAATC-GCAGCTG--CTAACGGTATCACAG 345
BSNT_04056___ 346 AAGCTGTTTCATC--TGTTTGATCAAGCAGTCAGCAGAGAGAGTGAAAAT 393
.||.||||| || |.||.||||||.||||..||..|.|.|.|||||||
BPUM_2433___s 346 GAGTTGTTT--TCGATATTCGATCAATCAGTTTGCCAAAAAACTGAAAAT 393
BSNT_04056___ 394 CATTTAACGGTTTCGCTTCAAACGGATCATCCTGACAGACAGCTGAT--- 440
|||||||||||..||.|.|||||.||||| ||| |||.| .||||
BPUM_2433___s 394 CATTTAACGGTCACGTTCCAAACAGATCA---TGA-AGAGA-ATGATGTG 438
BSNT_04056___ 441 -TC-TGTACCTTGATTTTCACGG--------CGCCTTTGCCGATCC---A 477
|| |.||..|||||||..|.|| |...|||| |||.| |
BPUM_2433___s 439 GTCTTATATTTTGATTTCAAAGGAAAATTAACAAGTTTG--GATGCGTTA 486
BSNT_04056___ 478 TCTGCTTTTGATGA-------TATTCGGCAGAATGGATATGAGGACATTG 520
..|||.|||.|||| |||.| ||| |||||| ||
BPUM_2433___s 487 AATGCGTTTCATGACGCAAACTATCC------ATG--TATGAG-----TG 523
BSNT_04056___ 521 -------ATATCATGCGTTTTGAAATCACGAGTCACGAATGTTTGATTGA 563
||.||||| |.||.|||||.||.|...|||||||
BPUM_2433___s 524 TAGTTCAATTTCATG----------TGACAAGTCATGAGTCCATGATTGA 563
BSNT_04056___ 564 AATTGGGTTG-GACTAG----- 579
..||.|.||| |.|.||
BPUM_2433___s 564 GCTTTGTTTGAGGCAAGAATGA 585
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