Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04077 and BPUM_2447
See
Amino acid alignment /
Visit
BSNT_04077 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_04077.1.24716.seq
# -bsequence dna-align/BPUM_2447.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04077-BPUM_2447.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04077-BPUM_2447.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04077
# 2: BPUM_2447
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 823
# Identity: 331/823 (40.2%)
# Similarity: 331/823 (40.2%)
# Gaps: 389/823 (47.3%)
# Score: 560.5
#
#
#=======================================
BSNT_04077 0 -------------------------------------------------- 0
BPUM_2447 1 ATGATTGAGATTTTTCTGTTTCTTGCAGGCATCACGATGGGATCGTTCTT 50
BSNT_04077 0 -------------------------------------------------- 0
BPUM_2447 51 TCATCTCGTTGGTGAAAGGCTACCGGTGAAGCGGTCTATTCTTATTCCAC 100
BSNT_04077 1 --------------------------------------------ATGTAT 6
||| ||
BPUM_2447 101 GCTCTCACTGCACAGCCTGTAAACAGCCGCTATCCCTACGCGAAATG-AT 149
BSNT_04077 7 CCCGC----AGCAGAGCTTGT---GACAGCGTGTT-TA---TTTGCCGCC 45
||||| ..|..|.||||| ||..|.||.|| || .||||
BPUM_2447 150 CCCGCTCGTTTCTTATCTTGTATGGAAGGGGTCTTGTAAACATTGC---- 195
BSNT_04077 46 GCAGGAATACG-CT---TTGGCACGT------CGCTGGAACTGTTTCCCG 85
||.||.|| || |||||.| | ||.|.||.|| |
BPUM_2447 196 ---GGCATTCGTCTATCTTGGCTC-TATCCAACGATTGAGCT-------G 234
BSNT_04077 86 CTGT-----GGTGTTTATCTCTCTTCTCA-TTATTG--TTGCAG------ 121
|||| |||.|||.|.|.| ||| ||||.| |.||.|
BPUM_2447 235 CTGTCAGGCGGTCTTTTTTTGT----TCATTTATAGGATCGCTGGTTTTT 280
BSNT_04077 122 ----TGACAGATATTCATTTTATGCTGATTCCAAATCGTATAT---TGAT 164
|||..| ||.||||.|..||||||....|.||.||| ||||
BPUM_2447 281 CGTTTGAAGG----TCTTTTTCTTATGATTCTTTGTAGTTTATTCGTGAT 326
BSNT_04077 165 ---TTTCTT------TCTTCCCTTTTT--GGCGGCCG--CGAGATTGATT 201
|.||.| |||||.||.|.| ||..|||| ||||.| .||
BPUM_2447 327 TGCTGTCGTGAGTGATCTTCTCTATATGAGGGTGCCGAACGAGCT--GTT 374
BSNT_04077 202 TCTCCGCTTGATTCCTGGTAT-----------GCAGGCCTG--------- 231
||||..|||..|||||..|.| |||.| |||
BPUM_2447 375 TCTCTTCTTTTTTCCTCTTTTCGCCATATACCGCACG-CTGGAACCGCTT 423
BSNT_04077 232 ----TTAGGTGCGGCA--GCCGGATT-TCT-ATTTCTGGC-------TG- 265
||.|||| ||.| |.|||.|| ||| ||||.|.|| ||
BPUM_2447 424 CTAATTTGGTG-GGAAGGGACGGCTTCTCTCATTTTTTGCATTCTTTTGT 472
BSNT_04077 266 --------------TAATT---GCCGCAATCACCCATGGGGGAGTA--GG 296
||.|| ||| .||| |||| ||
BPUM_2447 473 TTTCTAGTCTAGATTATTTTAAGCC-AAAT------------AGTATGGG 509
BSNT_04077 297 GGGAGGAGATATTAAATTATTTGCGGTG-ATTGGCTTTGTGC-TTGGTGT 344
.||||..|||||.|| .||.|.|.||| |.|.||.||.||| ||||..|
BPUM_2447 510 CGGAGCTGATATGAA--GATGTTCAGTGTACTTGCATTTTGCTTTGGCTT 557
BSNT_04077 345 GAAA------------ATGCTGGCAGCTGCCTTTTTCTTTTCTGTTT--- 379
.||| ||| ||||||||.|..|||.|
BPUM_2447 558 CAAACCGTTCCTTCTCATG-----------CTTTTTCTCTCATGTATCAC 596
BSNT_04077 380 TG--ATAGGTGCATTATATGGAGCGGCA---GCCGTT--CTGACTGGTAG 422
|| || ||| |||| ||| |.|.|| ||
BPUM_2447 597 TGGAAT-GGT---TTAT--------GCAAAGGTCTTTTCCT--------- 625
BSNT_04077 423 ACTCGCTAAAAGGCAGCCGCTTCCC-TTTGCCCCCGCTATAGCCGCAGGG 471
.|||.|.|||.| |||| .||||| ||||..||..|.||.||
BPUM_2447 626 -TTCGATTAAACG-AGCC-ATTCCCTTTTGTTCCTTCGATCGC------- 665
BSNT_04077 472 AGCATTTTAGCCTATTTATACGGTGACTCT------ATCATTTCTTTTTA 515
.|||| || |||.|.|.||..|||| .||.|.||||.||
BPUM_2447 666 --TATTT----CT-TTTTTTCTGTATCTCTGTGGTACTCCTGTCTTGTT- 707
BSNT_04077 516 TATCAAAATGGCATTGGGCTGA- 537
||| |||.|||| |
BPUM_2447 708 --TCA-------ATTTGGCT-AG 720
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.