Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04080 and BPUM_2449
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_04080___valS.1.24716.seq
# -bsequence dna-align/BPUM_2449___valS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04080___valS-BPUM_2449___valS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04080___valS-BPUM_2449___valS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04080___valS
# 2: BPUM_2449___valS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2668
# Identity: 2101/2668 (78.7%)
# Similarity: 2101/2668 (78.7%)
# Gaps: 50/2668 ( 1.9%)
# Score: 8231.5
#
#
#=======================================
BSNT_04080___ 1 ATGGAAACGAATGAACAAACAATGCCGACGAAATATGATCCGGCAGCGGT 50
||||||||.|||.|.|||..||||||.||.||.||.||.||....|||.|
BPUM_2449___v 1 ATGGAAACAAATAATCAAGAAATGCCAACAAAGTACGACCCAAATGCGAT 50
BSNT_04080___ 51 TGAAAAAGACCGATATGATTTTTGGCTAAAAGGCAAATTTTTTGAAGCGG 100
||||||||||||.|||...|..|||||..||||.|||||.||.|||||..
BPUM_2449___v 51 TGAAAAAGACCGCTATACGTACTGGCTTGAAGGGAAATTCTTCGAAGCAC 100
BSNT_04080___ 101 GCAGTGACCAGACAAAAGAGCCATACTCTGTTGTCATCCCGCCGCCAAAC 150
..|.||||.|.||.|||||.|||||..|.||.|||||.||.||.||||||
BPUM_2449___v 101 AAAATGACAAAACGAAAGATCCATATACAGTCGTCATTCCTCCACCAAAC 150
BSNT_04080___ 151 GTAACAGGAAGACTTCACCTTGGCCACGCATGGGACACAACGCTGCAAGA 200
||.|||||||.|||.||||||||.||.||||||||..|.||.||.|||||
BPUM_2449___v 151 GTGACAGGAAAACTGCACCTTGGGCATGCATGGGATTCGACTCTTCAAGA 200
BSNT_04080___ 201 CATTGTAACAAGAATGAAACGCATGCAGGGCTATGATGTGCTGTGGCTTC 250
|||.||.|||.|.||||||||.||||||||||||||.||.||.|||||||
BPUM_2449___v 201 CATCGTGACACGTATGAAACGTATGCAGGGCTATGACGTTCTATGGCTTC 250
BSNT_04080___ 251 CAGGCATGGACCATGCCGGCATCGCAACACAGGCTAAAGTGGAGGCGAAA 300
||||.|||||.||||||||.||.||.|||||.||.||.||.|||||.||.
BPUM_2449___v 251 CAGGAATGGATCATGCCGGTATTGCGACACAAGCAAAGGTTGAGGCAAAG 300
BSNT_04080___ 301 CTTCGTGAAGAAGGCAAATC--CCGCTACGATTTAGGCCGTGAAAAATTC 348
|||||.||||||||| .|| |||.||.||..|.|||||.||.||||||
BPUM_2449___v 301 CTTCGCGAAGAAGGC--GTCAGCCGTTATGACCTTGGCCGCGAGAAATTC 348
BSNT_04080___ 349 CTCGAAGAAACGTGGAAGTGGAAGGAAGAATATGCTGACTTTATTCGCAG 398
.|.||||||||||||||.|||||.|||||||||||.||||||||||||||
BPUM_2449___v 349 GTGGAAGAAACGTGGAAATGGAAAGAAGAATATGCGGACTTTATTCGCAG 398
BSNT_04080___ 399 CCAGTGGGCGAAATTAGGTCTTGGCCTAGATTATTCCCGTGAACGTTTTA 448
|||.|||||||||.|.||.|||||.||.|||||.||.|||||||||||||
BPUM_2449___v 399 CCAATGGGCGAAAATGGGACTTGGTCTTGATTACTCGCGTGAACGTTTTA 448
BSNT_04080___ 449 CGCTGGATGAAGGCTTGAGCAAAGCGGTAAGAGAAGTATTCGTTAAGCTT 498
|..|||||||.||..|||..|||||.|||.|..||||.||.|||.|..|.
BPUM_2449___v 449 CATTGGATGAGGGTCTGAATAAAGCAGTACGTCAAGTGTTTGTTCAATTG 498
BSNT_04080___ 499 TATGAAAAAGGCCTGATCTACAGAGGCGAATATATTATTAACTGGGACCC 548
|||||||||||.||||||||..|.||.||.||.||.|||||||||||.||
BPUM_2449___v 499 TATGAAAAAGGGCTGATCTATCGCGGAGAGTACATCATTAACTGGGATCC 548
BSNT_04080___ 549 AGCGACAAAAACAGCCCTATCCGACATTGAGGTGATTTACAAGGATGTTC 598
||||||.|||||.||.||.||.||.|||||.||||||||.||.|||||||
BPUM_2449___v 549 AGCGACGAAAACGGCACTTTCTGATATTGAAGTGATTTATAAAGATGTTC 598
BSNT_04080___ 599 AAGGCGCGTTCTATCATATGAGCTATCCGCTTGCTGACGGTTCAGGCTCA 648
||||.|||||.|||||..|.||.||.||.|||.|.||.||..|.||.|||
BPUM_2449___v 599 AAGGTGCGTTTTATCACTTAAGATACCCACTTTCAGATGGCACGGGTTCA 648
BSNT_04080___ 649 ATTGAAATTGCGACGACACGTCCTGAAACAATGCTCGGTGATACAGCTGT 698
||||||||||||||||||.|.|||||||||||||||||.|||||||||||
BPUM_2449___v 649 ATTGAAATTGCGACGACAAGACCTGAAACAATGCTCGGAGATACAGCTGT 698
BSNT_04080___ 699 TGCCGTTCACCCTGAAGACGAGCGCTATAAACACCTTATCGGAAAAACGG 748
|||.||.||.||.||.|||||.||.|||.|.||..|.||.||||||||.|
BPUM_2449___v 699 TGCTGTGCATCCAGATGACGAACGTTATCAGCATTTGATTGGAAAAACAG 748
BSNT_04080___ 749 TGATCCTGCCGATTGTAAATCGTGAAATTCCGATTGTCGGTGATGACTAT 798
||.||.||||.|||..|...||.||.||||||||.||.|.|||||||||.
BPUM_2449___v 749 TGGTCTTGCCAATTACAGGACGCGAGATTCCGATCGTTGCTGATGACTAC 798
BSNT_04080___ 799 GTTGATATGGAATTTGGTTCAGGTGCCGTGAAAATTACGCCTGCTCATGA 848
||.||||||||.|||||||||||.||.|||||||||||.|||||||||||
BPUM_2449___v 799 GTCGATATGGAGTTTGGTTCAGGCGCTGTGAAAATTACACCTGCTCATGA 848
BSNT_04080___ 849 TCCGAACGACTTCGAGCTTGGCAACCGCCACAATTTAGAACGCATTCTTG 898
.|||||.|||||.||||||||.||||||||..|.|||||.||.|||||.|
BPUM_2449___v 849 CCCGAATGACTTTGAGCTTGGAAACCGCCATGACTTAGAGCGTATTCTAG 898
BSNT_04080___ 899 TCATGAATGAAGATGGCACGATGAATGAAAATGCTCTGCAATATCAAGGC 948
|.|||||||||||||||||.|||||||.||||||.|||||||||.|||..
BPUM_2449___v 899 TTATGAATGAAGATGGCACAATGAATGCAAATGCACTGCAATATAAAGAA 948
BSNT_04080___ 949 ATGGATCGTTTTGAATGCCGCAAAAAGCTCGTGAAAGATTTACAGGAGGC 998
|||||.||.|||||||||||.|||.||||.||.|||||.|||||.||.|.
BPUM_2449___v 949 ATGGACCGCTTTGAATGCCGTAAACAGCTTGTAAAAGACTTACAAGAAGA 998
BSNT_04080___ 999 GGGAGTTCTCTTCAAGATCGAGGATCATATGCACTCTGTCGGCCATAGTG 1048
|||..||.|.|||||.||.|||||.||||||||.||.||.||.|||||||
BPUM_2449___v 999 GGGTATTTTGTTCAAAATTGAGGACCATATGCATTCAGTTGGTCATAGTG 1048
BSNT_04080___ 1049 AACGAAGCGGGGCTGTTGTGGAGCCTTATCTTTCTACACAATGGTTTGTG 1098
|.||||||||.|||||.||.||.||||||.|.||.||||||||||||||.
BPUM_2449___v 1049 AGCGAAGCGGAGCTGTCGTTGAACCTTATTTATCAACACAATGGTTTGTA 1098
BSNT_04080___ 1099 CGCATGCAGCCGCTTGCTGATGCAGCGATTGAGCTGCAAAAGAAAGAAGA 1148
...|||||||||||.||.||.|.|||.||..|.||.|||||....||.||
BPUM_2449___v 1099 AAAATGCAGCCGCTGGCAGACGAAGCCATCAACCTTCAAAATGGGGACGA 1148
BSNT_04080___ 1149 -AAAGGTCAACTTTGTGCCTGACCGTTTCGAAAAAACGTATTTACACTGG 1197
.|||.|||| |||||.||.|||||.||.|||||.|||||||||||||||
BPUM_2449___v 1149 CCAAGTTCAA-TTTGTTCCAGACCGCTTTGAAAAGACGTATTTACACTGG 1197
BSNT_04080___ 1198 ATGGAAAACATCCGCGACTGGTGTATCTCCCGTCAATTGTGGTGGGGCCA 1247
||||||||.|||||.|||||||||||.||.|||||..|.||||||||.||
BPUM_2449___v 1198 ATGGAAAATATCCGTGACTGGTGTATTTCTCGTCAGCTATGGTGGGGACA 1247
BSNT_04080___ 1248 TCGTATTCCTGCCTGGTATCATAAAGAAACAGGCGAGCTATATGTCGGGC 1297
.||.|||||.||||||||||||||||||||....||..||||.||.||.|
BPUM_2449___v 1248 CCGCATTCCAGCCTGGTATCATAAAGAAACGAAAGAAGTATACGTAGGAC 1297
BSNT_04080___ 1298 TTGAAGCGCCGGAAGACAGCGAAAATTGGGAACAGGATACAGACGTACTG 1347
|.|||||.||.|||||.|..||.||.|||||||||||||..||.||.||.
BPUM_2449___v 1298 TGGAAGCACCAGAAGATATAGAGAACTGGGAACAGGATAACGATGTGCTT 1347
BSNT_04080___ 1348 GATACATGGTTCAGTTCTGCGCTATGGCCTTTCTCCACAATGGGCTGGCC 1397
|||||.|||||.|||||.|||||.|||||||||||.||||||||||||||
BPUM_2449___v 1348 GATACTTGGTTTAGTTCAGCGCTTTGGCCTTTCTCTACAATGGGCTGGCC 1397
BSNT_04080___ 1398 TGATGTAACGGCTGAAGACTTTAAACGCTACTATCCGACAGATGTTCTCG 1447
.||||.|..|..|||||||||.||.|||||||||||.|||.|..|.||.|
BPUM_2449___v 1398 GGATGCAGAGAGTGAAGACTTCAAGCGCTACTATCCAACAAACCTGCTTG 1447
BSNT_04080___ 1448 TGACAGGGTACGATATCATTTTCTTCTGGGTATCACGCATGATTTTCCAA 1497
|.|||||.||.||.|||||||||||||||||.||.||||||||.||||||
BPUM_2449___v 1448 TTACAGGCTATGACATCATTTTCTTCTGGGTCTCTCGCATGATCTTCCAA 1497
BSNT_04080___ 1498 GGCATTGAATTTACAGGCGAGCGCCCGTTCAAAGATGTTTTAATCCACGG 1547
||..|||||||.|||||.||....|||||.|||||.|||.|.||.||.||
BPUM_2449___v 1498 GGTCTTGAATTCACAGGAGAAAAACCGTTTAAAGACGTTCTTATTCATGG 1547
BSNT_04080___ 1548 CTTAATCCGTGACGAGCAAGGCCGGAAAATGAGTAAATCTCTTGGCAACG 1597
..|.|||||||||||||||||.||.|||||||||||.||.||.||.||||
BPUM_2449___v 1548 GCTGATCCGTGACGAGCAAGGACGTAAAATGAGTAAGTCGCTAGGAAACG 1597
BSNT_04080___ 1598 GTGTCGACCCGATGGATGTGATTGACAAGTACGGAGCCGATTCTCTGCGT 1647
|..|.||.||.|||||.||.||.|||||||||||.||.|||||..|..|.
BPUM_2449___v 1598 GAATTGATCCAATGGAGGTCATCGACAAGTACGGTGCAGATTCATTAAGA 1647
BSNT_04080___ 1648 TATTTCCTTGCGACTGGAAGCTCTCCTGGCCAGGATCTGCGCTTCAGCTA 1697
||||||.|.||.|||||||||||.||.||.||||||||.|||||.||||.
BPUM_2449___v 1648 TATTTCTTAGCAACTGGAAGCTCACCAGGTCAGGATCTTCGCTTTAGCTT 1697
BSNT_04080___ 1698 TGAAAAAGTGGAATCGACCTGGAATTTTGCCAATAAAATTTGGAACGCCT 1747
||||||.||.|||||.||.|||||.|||||.||.||||||||||||||.|
BPUM_2449___v 1698 TGAAAAGGTTGAATCCACTTGGAACTTTGCGAACAAAATTTGGAACGCAT 1747
BSNT_04080___ 1748 CCCGTTTTGCATTAATGAATATGGATGGCATGACGTACGATGAGCTTGAT 1797
|.||||||||.||||||||.|||||||||.|.|||||.||||||||||||
BPUM_2449___v 1748 CACGTTTTGCTTTAATGAACATGGATGGCTTAACGTATGATGAGCTTGAT 1797
BSNT_04080___ 1798 CTGTCAGGCGAAAAATCAGTCGCTGACAAGTGGATTTTAACGCGATTAAA 1847
.||..|||.|||||||||||.||||||.|.|||||||||||.||||||||
BPUM_2449___v 1798 TTGATAGGAGAAAAATCAGTTGCTGACCAATGGATTTTAACCCGATTAAA 1847
BSNT_04080___ 1848 TGAAACGATCGAGCACGTG--ACCCAGCTTGCTGATCGA-TATGAATTTG 1894
|||||||||.|| |.||| ||.|||||.||||| |.| ||||||||.|
BPUM_2449___v 1848 TGAAACGATTGA--AAGTGTCACACAGCTGGCTGA-CAAGTATGAATTCG 1894
BSNT_04080___ 1895 GTGAAGTAGGACGCCATTTATATAACTTTATTTGGGACGATTTCTGTGAT 1944
|||||||.||..|.||||||||.|||||.||||||||.||||||||||||
BPUM_2449___v 1895 GTGAAGTGGGCAGACATTTATACAACTTCATTTGGGATGATTTCTGTGAT 1944
BSNT_04080___ 1945 TGGTATATTGAAATGGCGAAGCTTCCGCTTTATGGGGAAGACGAAGCGGC 1994
|||||.|||||||||||||||||||||||||||||.|||||.|||||.||
BPUM_2449___v 1945 TGGTACATTGAAATGGCGAAGCTTCCGCTTTATGGTGAAGATGAAGCAGC 1994
BSNT_04080___ 1995 TAAGAAAACTACCCGTTCCATCCTTGCTTACGTACTTGATCAAACGATGC 2044
.||||||||.||.||.||.||||||||.||.|||.|.||||||||||||.
BPUM_2449___v 1995 GAAGAAAACGACTCGGTCGATCCTTGCGTATGTATTAGATCAAACGATGA 2044
BSNT_04080___ 2045 GTCTGCTCCATCCGTTTATGCCATTCTTAACGGAGGAAATTTGGCAGCAC 2094
|.||.||.||||||||||||||.||||||||.||.|||||.||||||||.
BPUM_2449___v 2045 GACTTCTACATCCGTTTATGCCGTTCTTAACAGAAGAAATCTGGCAGCAT 2094
BSNT_04080___ 2095 CTTCCTCACCAAGGGGAATCGATTACAGTA-AGTCAATGGCCTGTAGTAG 2143
|||||.|||.||||.|||||||||||.||| .|.| .|||||||..||..
BPUM_2449___v 2095 CTTCCGCACGAAGGTGAATCGATTACTGTAGCGGC-TTGGCCTGAGGTGA 2143
BSNT_04080___ 2144 TGCCGGAGCAT---ACCGATACTGAAGCGACAGCTGACATGAAGCTTCTT 2190
.||||||||.| |.||| || |||||.|.|||||.|||||.||.||.
BPUM_2449___v 2144 AGCCGGAGCTTTCAAACGA-AC--AAGCGTCTGCTGATATGAAACTGCTC 2190
BSNT_04080___ 2191 GTTGAGCTGATCCGTTCTGTGCGCAATATCCGCAGTGAAGTCAATACGCC 2240
||.|||||.|||||.|||||.||.||.||||||||||||||.||||||||
BPUM_2449___v 2191 GTGGAGCTCATCCGCTCTGTTCGTAACATCCGCAGTGAAGTGAATACGCC 2240
BSNT_04080___ 2241 AATGAGCAAGCAGGTTGAACTGTACATTAAAAC-----------AAGCAC 2279
|||||||||.|||||.||.||.|||||||||.| |.|..|
BPUM_2449___v 2241 AATGAGCAAACAGGTGGAGCTTTACATTAAAGCCTCTACATCTGATGTGC 2290
BSNT_04080___ 2280 AGACGAAATAGCAGCCCGCCTCGAGGCGAACCGTTCATATGTTGAACGCT 2329
|| ||| |||.|.|||...||||||||||||.||||.||||
BPUM_2449___v 2291 AG--GAA---------CGCTTAGAGAAAAACCGTTCATATATTGAGCGCT 2329
BSNT_04080___ 2330 TTACGAATCCGAGCGTGCTTAAAATCGGCACCGATATTGAGGCTGTTGAT 2379
|||||||.||.||.||.|||.||||.|||||.|||.||...|||..||||
BPUM_2449___v 2330 TTACGAACCCAAGTGTACTTGAAATTGGCACAGATGTTCCAGCTAGTGAT 2379
BSNT_04080___ 2380 AAGGCGATGACGGCCGTTGTCTCAGGAGCAGAGGTTATTCTTCCGCTTGA 2429
||.|||||||||||.|||.|.||.|||||||||.|.|||||.||||||||
BPUM_2449___v 2380 AAAGCGATGACGGCTGTTATTTCTGGAGCAGAGCTCATTCTGCCGCTTGA 2429
BSNT_04080___ 2430 AGGCTTAATCAATATTGATGAAGAAATTGCCCGTCTGCAAAAAGAATTTG 2479
||||||||||||..|.|||||.|||||.||.|||||.|||||||||||.|
BPUM_2449___v 2430 AGGCTTAATCAACTTAGATGAGGAAATCGCTCGTCTACAAAAAGAATTGG 2479
BSNT_04080___ 2480 ATAAACTGACAAAAGAAGTTGAGCGTGTCCAAAAGAAACTTGGAAATGAA 2529
||||.||||||||||||||.|||||.|||||.||.||.||.||.||.|||
BPUM_2449___v 2480 ATAAGCTGACAAAAGAAGTAGAGCGCGTCCAGAAAAAGCTAGGCAACGAA 2529
BSNT_04080___ 2530 GGATTTATGAAAAAAGCGCCTGCACA----CGTAATTGATGAAGAACGTG 2575
||.||||||||||||||||||| |.| |||| ||.|||||.||||
BPUM_2449___v 2530 GGCTTTATGAAAAAAGCGCCTG-AAAGTGTCGTA---GAAGAAGAGCGTG 2575
BSNT_04080___ 2576 AAAAAGAAAAAGATTATATGGCGAAGCGTGACGCTGTTCAAAAACGAATG 2625
..||||||...||.|||.|.||.||.||.||.|||||||||||.||.||.
BPUM_2449___v 2576 CGAAAGAACGTGACTATGTCGCAAAACGCGAAGCTGTTCAAAAGCGTATT 2625
BSNT_04080___ 2626 GCTGAGCTGAAGGGTTAA 2643
|..||||||||.|..|||
BPUM_2449___v 2626 GAAGAGCTGAAAGCATAA 2643
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