Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04085 and BPUM_2452

See Amino acid alignment / Visit BSNT_04085 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:36
# Commandline: needle
#    -asequence dna-align/BSNT_04085___spoVID.1.24716.seq
#    -bsequence dna-align/BPUM_2452___spoVID.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04085___spoVID-BPUM_2452___spoVID.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04085___spoVID-BPUM_2452___spoVID.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04085___spoVID
# 2: BPUM_2452___spoVID
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1806
# Identity:     925/1806 (51.2%)
# Similarity:   925/1806 (51.2%)
# Gaps:         612/1806 (33.9%)
# Score: 2416.5
# 
#
#=======================================

BSNT_04085___      1 TTGCCGCAAAATCATCGATTGCAATTTTCTGTAGAAGAATCGATCTGTTT     50
                     |||.|.|||||..|||||||.||.|||||.|||||||||||.||||.|||
BPUM_2452___s      1 TTGTCTCAAAACAATCGATTACAGTTTTCAGTAGAAGAATCCATCTATTT     50

BSNT_04085___     51 CCAAAAAGGACAGGAAGTTTCTGAACTGCTTTCTATTTCATTAGATCCTG    100
                     |.|||..|||||||||||...|||.|||||.||||||||..|.|||||||
BPUM_2452___s     51 CAAAAGCGGACAGGAAGTCAGTGAGCTGCTGTCTATTTCTCTCGATCCTG    100

BSNT_04085___    101 ATATTAGGGTTCAGGAAGTAAATGATTATGTATCAATCATAGGATCGCTT    150
                     |.|||...|||||.|||||.|||||||||||.||.||.|.|||.||.||.
BPUM_2452___s    101 ACATTCTCGTTCAAGAAGTGAATGATTATGTTTCGATTAGAGGTTCACTC    150

BSNT_04085___    151 GAACTTACAGGTGAGTACAACATAGATCAAAACAAACATA----CCGAAG    196
                     ||.||.|||||.||.|||||||||.|||||.|..|.| ||    ..|||.
BPUM_2452___s    151 GAGCTAACAGGAGAATACAACATAAATCAAGAGGAGC-TATTGGGTGAAT    199

BSNT_04085___    197 AGATTT----------ATACAGATAAGC-GATTTGTTGAACAAGTCAGAA    235
                     .||.||          |||||||.|||| |||..|.|||  |.|||    
BPUM_2452___s    200 TGAGTTCCTATGCATCATACAGAGAAGCTGATGAGGTGA--AGGTC----    243

BSNT_04085___    236 AGAGAGAGGATGGAAGTGCGGA---ACTGACTCACTGTTTTCCTGTGGAT    282
                       |||||.||.||.|..|||||   .|||..|||   .||.||.||.|||
BPUM_2452___s    244 --AGAGAAGACGGGACAGCGGAGCTTCTGCATCA---ATTCCCAGTCGAT    288

BSNT_04085___    283 ATTACCATTCCGAAAAATAAAGTGAGCCATTTACAGGATGTCTTCGTCTT    332
                     ||.||.|||||.|||||.|||.|.||.||||||.|.|||||.||.||.||
BPUM_2452___s    289 ATCACGATTCCTAAAAACAAAATCAGTCATTTAAATGATGTGTTTGTGTT    338

BSNT_04085___    333 TATTGACGCATTTGACTATCAATTGACGG--ATTCGCGCATTT--TAACA    378
                     ||||||.||.|||||.||.||..||||.|  |.|||    |||  |.||.
BPUM_2452___s    339 TATTGATGCGTTTGATTACCAGCTGACAGAAAATCG----TTTGCTCACC    384

BSNT_04085___    379 ATTCAAGCTGATTTAGCGATCGAAGGGCTTTTGGACGATACGCAAGACAA    428
                     ||||||||||||.|||||||.||.||.|||||.|||||            
BPUM_2452___s    385 ATTCAAGCTGATCTAGCGATTGAGGGTCTTTTAGACGA------------    422

BSNT_04085___    429 AGAGCCGGAGATACCTTTATATGAAGCTCCTGCGGCATTCAGGGAGGAAG    478
                           |||.|..||      |.||||.|||               |.||
BPUM_2452___s    423 ------GGAAACGCC------TCAAGCGCCT---------------GTAG    445

BSNT_04085___    479 AGCTTTCAGAGCCGTCGGCA------CATAGTGTAGTAGAAGAACCGGGT    522
                     ||      |||||||..|.|      |||.||...|.|||||||...||.
BPUM_2452___s    446 AG------GAGCCGTATGAATTTGTTCATCGTTCTGAAGAAGAATATGGC    489

BSNT_04085___    523 G-CATCATCGGCAGAGGA--AGCAGTTCTTCAGC------ATGAACCGCC    563
                     | |||    |.|..|.||  |.|||  ||.||||      |||||..||.
BPUM_2452___s    490 GACAT----GACCTATGATTATCAG--CTGCAGCCAGAAGATGAAGAGCA    533

BSNT_04085___    564 AGCCGAACCGCCAGAACTTTTTATCTCGAAAGCGGGCCTCCGTGAAGAAC    613
                     ||..|||..||.|.||           ||             .||.||||
BPUM_2452___s    534 AGAAGAAGAGCTACAA-----------GA-------------CGATGAAC    559

BSNT_04085___    614 TGGAGACAGA--AAAAGCAGAATCTGAGCCGCCTGAATCGGTTGCTTCAG    661
                     ..||||..||  |..||||||           |||.||       |||||
BPUM_2452___s    560 GTGAGATTGATGAGGAGCAGA-----------CTGTAT-------TTCAG    591

BSNT_04085___    662 AACCAGA----GGCCAGAGAAGATGTGAAAG-AGGAAGAAG--AGTCAGA    704
                     .|..|.|    .|||..||||||    |||| |||||||||  |.|.|||
BPUM_2452___s    592 CATGACACGCGCGCCGAAGAAGA----AAAGCAGGAAGAAGAAATTGAGA    637

BSNT_04085___    705 -AGAGCTTGCTGTGCCGGAAACGGAGGTTCGTGCTGAATCGGAAACAGAA    753
                      ||||| ||.||.|..||.||              |||   ||.||.|||
BPUM_2452___s    638 TAGAGC-TGGTGAGTAGGGAA--------------GAA---GAGACCGAA    669

BSNT_04085___    754 GAATCTGAGCCAGAACCTGATCCTTCAGAAATAGAGATTCAAGAGATCGT    803
                     ||||             |||      ||.|||.| ||      |||.|||
BPUM_2452___s    670 GAAT-------------TGA------AGGAATCG-GA------AGAACGT    693

BSNT_04085___    804 TAAAGCAAAAAAAGAAACGGCTGAGCCGGCAGCTGCAATAGCGGATGTTC    853
                               .|.||||||| .||||         |||            
BPUM_2452___s    694 ----------GAGGAAACGG-AGAGC---------CAA------------    711

BSNT_04085___    854 GTGAAGAAGCAGACTCTCCAGCGGAGACTGAGCTTCGTGAACACGCCGGA    903
                       |||||||.|                  |.||||.||            
BPUM_2452___s    712 --GAAGAAGTA------------------GCGCTTGGT------------    729

BSNT_04085___    904 GCAGAAGAATCGCCTGCTTTG---GAAGCTGAACTTCATTCAGAGACTGT    950
                            .|||||  .|||||   ||||||.||.|.|             
BPUM_2452___s    730 -------TATCGC--TCTTTGCCTGAAGCTCAAGTGC-------------    757

BSNT_04085___    951 GATTGCAGAGGAAAAAGAGGAAACAACA------GAGTCTCCTAATCATG    994
                                      |.|||.||.||      ||..|.|||||     
BPUM_2452___s    758 -----------------AAGAACCACCATTTTTTGAACCGCCTAA-----    785

BSNT_04085___    995 AATATGCGCTGCGCCAAGAGGCTC-AAAATGAAGAAGCAGCTCAATCGGA   1043
                                         |||| .|.||||.||||.|..|.|   |||
BPUM_2452___s    786 --------------------GCTCTTAGATGAGGAAGAACGTGA---GGA    812

BSNT_04085___   1044 TCAGGCTGATCCTGCGCTTTGCCAAGAAGAGGCGGAAGCG-GATGAAGCT   1092
                      ||.|.||         |||        ||||.|||||.| || .|||.|
BPUM_2452___s    813 -CACGTTG---------TTT--------GAGGTGGAAGTGAGA-AAAGAT    843

BSNT_04085___   1093 TTGGAGAGTGTATCAGAGGCCGCTCTCTCCATAGAAGATAGCAG--AGAA   1140
                     ..|||.|                  ||.||   ||||  |||||  ||||
BPUM_2452___s    844 CCGGAAA------------------TCGCC---GAAG--AGCAGGAAGAA    870

BSNT_04085___   1141 ACAGCTTCAGCTGTA-----TATGTGGAGAATGACAAAGCCGATTTCCAT   1185
                     || |.||||||.|||     |||.|   ||||.||    |||.||     
BPUM_2452___s    871 AC-GGTTCAGCCGTATCCGGTATTT---GAATCAC----CCGCTT-----    907

BSNT_04085___   1186 TTCCATCA-----AAAAACAAGCTCGGAGGAGGCATCTCAAGA-----AG   1225
                         ||||     ||.|..||     |||||||      ||||     ||
BPUM_2452___s    908 ----ATCACGTGGAAGAGGAA-----GAGGAGG------AAGAGACGCAG    942

BSNT_04085___   1226 AATTGCCTGAACCGGCATACCGTACCTTCCTGCCTGAACAAGAAGAGGAG   1275
                     ||     |||            |||.|.||.||..|.||          |
BPUM_2452___s    943 AA-----TGA------------TACGTACCAGCTCGGAC----------G    965

BSNT_04085___   1276 GATTCTTTTTATTCAGCGCCTAAGCTGCTGGAGGAGGAAGAACAAGAGGA   1325
                     |       ||||                         |.||||.|||   
BPUM_2452___s    966 G-------TTAT-------------------------ATGAACGAGA---    980

BSNT_04085___   1326 AGAGAGCTTCGAAATTGAAGTGAGAAAAACACCATCAGCTGAAGAGCCTA   1375
                         |||..|.|||.| |..||||          ||||||.|||      
BPUM_2452___s    981 ----AGCGCCAAAAGT-ATATGAG----------TCAGCTCAAG------   1009

BSNT_04085___   1376 AGGAAGAAACACCTTTTCAATCCTTTCAGCTGCCTGAATCTTCTGAGAC-   1424
                     |.|||||..||   |||.||               ||        |||| 
BPUM_2452___s   1010 AAGAAGAGGCA---TTTGAA---------------GA--------AGACG   1033

BSNT_04085___   1425 TGAAAGGAAGGAAACGGATGCTGTTCCTAGGGTTGCTCCTGCTGCTGAAA   1474
                     |||.|     ||||||..||.|                            
BPUM_2452___s   1034 TGAGA-----GAAACGTCTGGT----------------------------   1050

BSNT_04085___   1475 CGAAGGAACCTCAAACAAAGGAAAGTGATAATTCTCTTTATTTAACAAAA   1524
                                            |||||.||||||||||||||||||||.
BPUM_2452___s   1051 -----------------------AGTGAGAATTCTCTTTATTTAACAAAG   1077

BSNT_04085___   1525 CTCTTTACAA---AAGAAGCGGATGAGTTTTCGAGAATGAAAATTTGTAT   1571
                     ||.|||.|.|   |.||.|.|||.||.|||||..|.||||||||.|||||
BPUM_2452___s   1078 CTGTTTGCTAAGCAGGAGGAGGAAGATTTTTCTCGCATGAAAATATGTAT   1127

BSNT_04085___   1572 TGTGCAGCAGGAAGATACGATCGAGCGTTTATGCGAACGGTA-----TGA   1616
                     .||.|||||.|||||||||.||||.|||.|.||.||.||.||     |||
BPUM_2452___s   1128 AGTTCAGCAAGAAGATACGGTCGATCGTATTTGTGAGCGATATCAGTTGA   1177

BSNT_04085___   1617 AATTACATCCCAGCAGCTGATCAGGATGAATTCTTTAGCCTTGGATGATG   1666
                     |..|     .||||||||..|..|.|..|||||.|||.|..||||||..|
BPUM_2452___s   1178 ATGT-----GCAGCAGCTTCTTCGCACAAATTCATTATCGGTGGATGCGG   1222

BSNT_04085___   1667 AATTAAAAGCAGGACAGATTCTCTATATTCCTCAATATAAAAATAGCCAT   1716
                     |..|..|||.|||.||||||||.|||||||||.|||||.||||.|||.||
BPUM_2452___s   1223 AGCTTGAAGAAGGGCAGATTCTTTATATTCCTGAATATCAAAAAAGCAAT   1272

BSNT_04085___   1717 GCGTAA   1722
                     ||.|||
BPUM_2452___s   1273 GCCTAA   1278


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