Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04088 and BPUM_2454

See Amino acid alignment / Visit BSNT_04088 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:36
# Commandline: needle
#    -asequence dna-align/BSNT_04088___hemB.1.24716.seq
#    -bsequence dna-align/BPUM_2454___hemB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04088___hemB-BPUM_2454___hemB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04088___hemB-BPUM_2454___hemB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04088___hemB
# 2: BPUM_2454___hemB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 995
# Identity:     725/995 (72.9%)
# Similarity:   725/995 (72.9%)
# Gaps:          43/995 ( 4.3%)
# Score: 2524.5
# 
#
#=======================================

BSNT_04088___      1 ATGAGTCAATCATTTAATAGACACCGCCGCCTGCGGTCATCAAAAGC---     47
                     |||| |.||  ||||||.|||||||||.|.||||||     |.||||   
BPUM_2454___h      1 ATGA-TGAA--ATTTAACAGACACCGCAGACTGCGG-----ACAAGCGCA     42

BSNT_04088___     48 --AATGAGAGAAATGGTAAAGGAAACACGTTTGCA-TCCATCAGATTTTA     94
                       ||||||||||.|.||.|..||||| |.|||..| .|||||.|||||.|
BPUM_2454___h     43 GGAATGAGAGAATTAGTCAGAGAAAC-CTTTTTAAGACCATCTGATTTCA     91

BSNT_04088___     95 TTTATCCGATTTTTGTCGTTGAAGGGCTGGAA--GGCAAAAAAGCTGTTC    142
                     ||||||||||.|||.|.||.||  ||.||.||  |.|..|||||..|||.
BPUM_2454___h     92 TTTATCCGATCTTTTTTGTAGA--GGGTGAAAATGTCCGAAAAGAAGTTT    139

BSNT_04088___    143 CGTCAATGCCTGATGTTTACCATGTATCATTAGATTTATTGAAGGATGAA    192
                     |.||||||||.|.||||||.||..|.|||.|.||..|..|.||.||.|||
BPUM_2454___h    140 CTTCAATGCCGGGTGTTTATCACATTTCAGTGGACCTTGTAAAAGAAGAA    189

BSNT_04088___    193 GTAGCGGAGCTGGTCAAACTGGGCATTCAATCTGTTATCGTGTTCGGCAT    242
                     ||....|||||.|||.|.||.||.||..||||..||||.||.||.||..|
BPUM_2454___h    190 GTCAAAGAGCTTGTCGACCTAGGTATCAAATCAATTATTGTATTTGGTGT    239

BSNT_04088___    243 CCCGGAAGAAAAAGATGAT-TGCGGAACACAAGCGTACCATGATCACGGA    291
                     .||.||..|.|||||..|| || ||.|...|.|||||.||.||.||.||.
BPUM_2454___h    240 TCCAGATCATAAAGACCATGTG-GGCAGTGAGGCGTATCACGACCATGGC    288

BSNT_04088___    292 ATTGTCCAAAAAGCCATCAC-AGAAATTAAAGAACACTTCCCTGAAATGG    340
                     |||||.||||.|||.| |.| .||.||.|||.|.||.|||||.||   |.
BPUM_2454___h    289 ATTGTGCAAAGAGCGA-CGCTTGAGATCAAAAAGCATTTCCCAGA---GC    334

BSNT_04088___    341 TTGTTGTC---GCTGACACGTGCCTGTGCGAATATACAGACCACGGCCAT    387
                     ||||.|||   ||.|||||.|||.|.|||.||||||||||.||.||.|||
BPUM_2454___h    335 TTGTGGTCATTGCAGACACTTGCTTATGCCAATATACAGATCATGGACAT    384

BSNT_04088___    388 TGCGGACTTGTCAAAGACGGGGTCATCCTCAATGATGAATCGCTGGAGCT    437
                     ||||||.||||..||||.||.|..||..|.|||||||||||.||..||||
BPUM_2454___h    385 TGCGGAATTGTTGAAGATGGAGAGATTTTAAATGATGAATCACTTCAGCT    434

BSNT_04088___    438 TTTGGCGCAGACAGCTGTCAGCCAAGCGAAAGCAGGTGCGGATATCATTG    487
                     .||.|||.|.||.|||||.||.|||||.|..||||||||.||||||||||
BPUM_2454___h    435 ATTAGCGAAAACCGCTGTTAGTCAAGCAAGCGCAGGTGCAGATATCATTG    484

BSNT_04088___    488 CGCCATCAAACATGATGGACGGATTTGTTACAGTG---ATCAGAGAAGCA    534
                     |.||.||.||.||||||||.|||||||||   |||   ||..|.|||||.
BPUM_2454___h    485 CTCCTTCTAATATGATGGATGGATTTGTT---GTGGCCATTCGTGAAGCG    531

BSNT_04088___    535 CTTGATAAAGAAGG----ATTCGTCAATATTCCCATCATGTCTTACGCTG    580
                     ||||||.|||..||    ||||    ||.|.|||.|||||||.||.||||
BPUM_2454___h    532 CTTGATGAAGCTGGCTTTATTC----ATGTACCCGTCATGTCATATGCTG    577

BSNT_04088___    581 TTAAATATTCAAGTGAGTTTTACGGTCCGTTCCGTGATGCAGCAAACAGC    630
                     |.||||||.||||||.||||||.||||||||.||||||||.||..|.|||
BPUM_2454___h    578 TGAAATATGCAAGTGCGTTTTATGGTCCGTTTCGTGATGCGGCGCATAGC    627

BSNT_04088___    631 ACACCGCAATTCGGAGACCGCAAAACATATCAGATGGACCCTGCCAACCG    680
                     ||||||||.||.|||||.||.||||||||.||.|||||||||||.|||||
BPUM_2454___h    628 ACACCGCAGTTTGGAGATCGTAAAACATACCAAATGGACCCTGCAAACCG    677

BSNT_04088___    681 TATGGAGGCACTCCGCGAAGCACAATCAGATGTCGAAGAAGGCGCAGACT    730
                     |.|.||.|||.|..|.|||||.|||||.||.||.|||||.||.||.||||
BPUM_2454___h    678 TTTAGAAGCATTAAGAGAAGCGCAATCTGACGTAGAAGAGGGAGCTGACT    727

BSNT_04088___    731 TTTTGATTGTCAAACCTTCGCTTTCTTATATGGATATCATGCGTGACGTA    780
                     |..|.|||||.|||||.||.|||||||||.|.||||||||||||||.||.
BPUM_2454___h    728 TCCTCATTGTGAAACCATCCCTTTCTTATTTAGATATCATGCGTGATGTG    777

BSNT_04088___    781 AAAAATGAGTTTACTTTGCCGCTCGTCGCTTATAATGTAAGCGGAGAGTA    830
                     ||||||||.|||||..|.||..|.||.|||||.|||||.||||||||.||
BPUM_2454___h    778 AAAAATGAATTTACACTCCCTGTTGTTGCTTACAATGTGAGCGGAGAATA    827

BSNT_04088___    831 TTCAATGGTGAAGGCTGCAGCGCAGAACGGCTGGATCAAAGAAAAAGAAA    880
                     |.|||||||.||.||.||.||.||.||.||.|||||....||||||||..
BPUM_2454___h    828 TGCAATGGTCAAAGCCGCTGCTCAAAATGGGTGGATTTCTGAAAAAGAGC    877

BSNT_04088___    881 TTGTGTTGGAAATTTTGACAAGCATGAAGCGCGCGGGTGCCGACCTGATT    930
                     ||||..|.|||||..|||||||||||||.||.||.||.||.||.||.||.
BPUM_2454___h    878 TTGTTCTTGAAATGCTGACAAGCATGAAACGTGCAGGAGCAGAACTCATC    927

BSNT_04088___    931 ATTACGTATCATGCGAAAGACGCAGCGAAATGGCTTGCGGAGTAA    975
                     ||||||||||||||.|||||.|||||.||||||||..|.||.|||
BPUM_2454___h    928 ATTACGTATCATGCAAAAGATGCAGCAAAATGGCTCTCAGAATAA    972


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04088 and BPUM_2454

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
