Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04095 and BPUM_2459

See Amino acid alignment / Visit BSNT_04095 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:36
# Commandline: needle
#    -asequence dna-align/BSNT_04095.1.24716.seq
#    -bsequence dna-align/BPUM_2459___ysxD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04095-BPUM_2459___ysxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04095-BPUM_2459___ysxD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04095
# 2: BPUM_2459___ysxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity:     298/592 (50.3%)
# Similarity:   298/592 (50.3%)
# Gaps:         200/592 (33.8%)
# Score: 687.5
# 
#
#=======================================

BSNT_04095         1 ATGAAACAAAAATCAATTTTATTCCCTTGTCTGCTGCTTGCCGCTT----     46
                     .||||..|.|||||.|||||         .||||.|||   |.|||    
BPUM_2459___y      1 TTGAAGAAGAAATCCATTTT---------GCTGCCGCT---CACTTTGCT     38

BSNT_04095        47 --CTG------TATATG-CAT-------GGCTAGAAAGCGGCCAAGCCGA     80
                       |||      |||||| |||       |        |.||.|||     
BPUM_2459___y     39 GGCTGTAGCGCTATATGCCATTCTCTCCG--------GAGGTCAA-----     75

BSNT_04095        81 ACTGTTTTCA----------GGGCAGGATCAATGGCCTGTTCTCCTCATG    120
                          |||.|          |.|||.||..|||||..|...|||.|..||
BPUM_2459___y     76 -----TTTGACATTTGGAAGGAGCAAGAGAAATGGTATACACTCATACTG    120

BSNT_04095       121 CTGTTAGGCGCAGCCTTTGTATATCAAGGAAAAA------AAGAAGCCGT    164
                     ||.||.|||...||.||..|||||||||||||.|      |||||..|| 
BPUM_2459___y    121 CTTTTTGGCCTTGCTTTCTTATATCAAGGAAAGAAGGAGCAAGAAAGCG-    169

BSNT_04095       165 TACACCCCATTTCTTCATCGGTTTGCTTCTCTTCGGGAT--CGG--CT--    208
                          |.|||.|.||.||||||.||||         |||  |||  ||  
BPUM_2459___y    170 -----CTCATGTGTTTATCGGTATGCT---------GATGACGGGCCTTT    205

BSNT_04095       209 ---TACACTTTTTTGCCAAGCCGAAATGGGTATGGTGGCC----------    245
                        ||||||||.||....||||.||||.||..|..|||||          
BPUM_2459___y    206 CGCTACACTTTATTCTTCAGCCAAAATTGGACTACTGGCCAGACACATTT    255

BSNT_04095       246 -GGATGAT-----------TTTGAAATGCTCCTCTTTATGATCGGCTTCT    283
                      .||||||           ||.||..||| |||.|||.|||         
BPUM_2459___y    256 ACGATGATTGTATTCATCGTTGGACTTGC-CCTTTTTGTGA---------    295

BSNT_04095       284 CACTTCTCGTTTCAGCCGTTCAAAAAAAAGAATAT-GTATATGAAGCTGT    332
                      |.|.|||           |||.|||||||||||| |||| ||||..|| 
BPUM_2459___y    296 -AATCCTC-----------TCAGAAAAAAGAATATCGTAT-TGAAAGTG-    331

BSNT_04095       333 GTCGATGATTTGTTTT--------TC--CCTGTTTTTGTACTT-TTTCAA    371
                              |||||.|        ||  .|||||..|.||.|| |||| |
BPUM_2459___y    332 ---------TTGTTCTCATTGCACTCGGTCTGTTCCTTTATTTCTTTC-A    371

BSNT_04095       372 ACAAATTATGGCA------------TGGCTT--GAGTCTGCGCATA-TTC    406
                     .|||||||   ||            |..|||  || ||    |.|| |||
BPUM_2459___y    372 GCAAATTA---CAAAACAGCTAAGTTCCCTTTCGA-TC----CCTACTTC    413

BSNT_04095       407 CAACAGCGCTTCTGAAGGAGTATTGGCCGTTTGTCTTTATTGGAATCAGT    456
                           ||.||.|||| ..|||.|||||.|.|||..|.||.|...|||||
BPUM_2459___y    414 ------CGGTTTTGAA-TTGTACTGGCCTTATGTACTGATAGCTGTCAGT    456

BSNT_04095       457 TTATTGTTATTATTGATAAAACGAAAAAAATCTATACGATAA    498
                     .|..|.||||||||..|||||.|.|||.||            
BPUM_2459___y    457 CTCCTCTTATTATTTTTAAAAAGGAAATAA------------    486


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