Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04099 and BPUM_2462

See Amino acid alignment / Visit BSNT_04099 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:37
# Commandline: needle
#    -asequence dna-align/BSNT_04099___lonB.1.24716.seq
#    -bsequence dna-align/BPUM_2462___lonB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04099___lonB-BPUM_2462___lonB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04099___lonB-BPUM_2462___lonB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04099___lonB
# 2: BPUM_2462___lonB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1702
# Identity:    1257/1702 (73.9%)
# Similarity:  1257/1702 (73.9%)
# Gaps:          83/1702 ( 4.9%)
# Score: 4482.0
# 
#
#=======================================

BSNT_04099___      1 ATGAGTTGGACAGGGATCGCGTTATTTATTCAGCTGTTTTTTGGGATCAT     50
                     .||||.||||||||.||||..|||||.||.||.|||||.|||||.|||.|
BPUM_2462___l      1 TTGAGCTGGACAGGAATCGTATTATTCATACAACTGTTCTTTGGTATCGT     50

BSNT_04099___     51 CATCGGTTTGTATTTTTGGAATTTGCTTAAAAATCAAAGGACACAAAAGG    100
                     ||||||..||||.||||||||.||.||.|.||||||..|.||||||||||
BPUM_2462___l     51 CATCGGGCTGTACTTTTGGAACTTACTGAGAAATCAGCGCACACAAAAGG    100

BSNT_04099___    101 TCACGATAGATAAAGAATCAAAGAAGGAAATGGAGCAGC-TTCGGAAA-A    148
                     |.||||||||.|||||.||||||||.||||||||  ||| .||.|||| |
BPUM_2462___l    101 TGACGATAGACAAAGAGTCAAAGAAAGAAATGGA--AGCACTCAGAAAGA    148

BSNT_04099___    149 TGCGTGCTATC-AGCT-TGTCCGAGCCATTATCTGAGAAGGTCCGCCCCA    196
                     ||||..|.||| |||| .||  ||.||.||.||.||||..|||||.||.|
BPUM_2462___l    149 TGCGGTCAATCAAGCTGAGT--GAACCCTTGTCAGAGAGAGTCCGGCCAA    196

BSNT_04099___    197 AAAGCTTTAAAGATATCGTCGGACAGGAAGACGGCATTAAAGCATTAAAG    246
                     |..|.|||.||||||||||.||.|||||||||||||||...|||.||||.
BPUM_2462___l    197 AGGGGTTTCAAGATATCGTGGGGCAGGAAGACGGCATTCGTGCACTAAAA    246

BSNT_04099___    247 GCGGCTTTATGCGGGCCAAATCCTCAGCATGTGATTGTCTATGGGCCACC    296
                     |||||..|||||||.||.||.||.||||||||.||.||.||.||.|||||
BPUM_2462___l    247 GCGGCACTATGCGGACCGAACCCACAGCATGTCATCGTTTACGGACCACC    296

BSNT_04099___    297 GGGAGTTGGGAAAACGGCTGCTGCGCGGCTTGTGTTGGAAGAAGCAAAAA    346
                     ||||||.||.|||||.||.|||||.||.||||||.||||||||||.||..
BPUM_2462___l    297 GGGAGTCGGTAAAACAGCCGCTGCCCGTCTTGTGATGGAAGAAGCGAAGC    346

BSNT_04099___    347 AACATAAAC----AATCACCGTTTAAAGAGCAGGCTGTCTTTGTGGAACT    392
                     ..|    ||    |.|||||.||||||.|..|.||.||||||||.||.||
BPUM_2462___l    347 GTC----ACGCTGATTCACCATTTAAAAAAGATGCGGTCTTTGTAGAGCT    392

BSNT_04099___    393 CGATGCGACAACAGCCCGTTTTGATGAAAGAGGAATTGCCGATCCGCTCA    442
                     ||||||.|||||.||..|.||.||||||.||||.|||||.||.|||||.|
BPUM_2462___l    393 CGATGCCACAACCGCAAGATTCGATGAACGAGGCATTGCAGACCCGCTTA    442

BSNT_04099___    443 TCGGCTCTGTCCATGACCCGATATATCAAGGGGCCGGAGCGATGGGACAG    492
                     |.||.||.||.||||||||.||.||.||.|||||.|||||.|||||.|||
BPUM_2462___l    443 TTGGTTCCGTGCATGACCCCATTTACCAGGGGGCTGGAGCAATGGGGCAG    492

BSNT_04099___    493 GCTGGGATTCCGCAGCCGAAGCAGGGAGCTGTCACCCATGCCCATGGCGG    542
                     ||.||.|||||||||||.||.||.|||||.|||||.|||||.||||||||
BPUM_2462___l    493 GCAGGCATTCCGCAGCCAAAACAAGGAGCCGTCACACATGCTCATGGCGG    542

BSNT_04099___    543 TGTGCTGTTTATTGATGAAATAGGGGAGCTGCATCCTATTCAAATGAATA    592
                     |||.||||||||.||||||||.||.|||||||||||.|||||||||||.|
BPUM_2462___l    543 TGTTCTGTTTATCGATGAAATTGGCGAGCTGCATCCGATTCAAATGAACA    592

BSNT_04099___    593 AAATGCTGAAGGTGCTTGAGGACAGAAAAGTCTTTTTAGACAGTGCGTAT    642
                     |||||||.||.|||||.||.||..|.||||||||||||||||||||.||.
BPUM_2462___l    593 AAATGCTCAAAGTGCTGGAAGATCGGAAAGTCTTTTTAGACAGTGCTTAC    642

BSNT_04099___    643 TACAGTGAGGAAAATACACAAATTCCGAATCATATTCATGATATTTTTCA    692
                     ||.|||||.||||||||.||.||.||||||||.||||||||||||||.||
BPUM_2462___l    643 TATAGTGAAGAAAATACCCAGATCCCGAATCACATTCATGATATTTTCCA    692

BSNT_04099___    693 AAATGGGCTGCCGGCTGATTTTCGCTTGATTGGCGCGACCACGAGAATGC    742
                     |||||||||.||||||||||||||.||.|||||.|||||.||.||||..|
BPUM_2462___l    693 AAATGGGCTTCCGGCTGATTTTCGATTAATTGGTGCGACGACAAGAACAC    742

BSNT_04099___    743 CAAACGAAATTCCGCCAGCTATCAGGTCCCGCTGTCTGGAGGTTTTTTTC    792
                     |..||||||||||.|||||.||..||||..|.||||||||..||||.||.
BPUM_2462___l    743 CTGACGAAATTCCACCAGCGATTCGGTCAAGATGTCTGGAAATTTTCTTT    792

BSNT_04099___    793 CGCGAGCTTGAAAAGGACGAGCTGAAAACTGT---TGCCAAAACAGCAGC    839
                     ...||.|||||..||.|.||.|||||||..||   |||.||   .||.|.
BPUM_2462___l    793 AAAGACCTTGACCAGCATGAACTGAAAATCGTCGCTGCTAA---GGCTGT    839

BSNT_04099___    840 GGATAAAATTGAAAA--AAATATCTCCGAAGAAGGCCTAGATCTT-TTGA    886
                     ..|.||||||.||||  ||.||..|  ||.|||||.|| ||.||| ||.|
BPUM_2462___l    840 CCAAAAAATTCAAAAGGAATTAAGT--GATGAAGGGCT-GAACTTGTTAA    886

BSNT_04099___    887 CCAGCTA---CACACGGAACGGGCGGGAAGCCGTCAATATGATTCAAATC    933
                     ||..|||   .|.|   ||.||.||.|||||.|||||.|||.|.||.||.
BPUM_2462___l    887 CCTCCTATGTGAAA---AATGGACGTGAAGCGGTCAACATGGTGCAGATT    933

BSNT_04099___    934 GCAGCGGGGATGGCTGTAACGGAGAATCGGAAGGACATTACGATTGAGGA    983
                     ||.||.||.|||||.||.|||||.||.||.||.|||||.||||||||.||
BPUM_2462___l    934 GCCGCTGGTATGGCGGTGACGGAAAACCGAAAAGACATCACGATTGAAGA    983

BSNT_04099___    984 TATTGAATGGGTCATTCACTCCAGTCAGCTTACTCCAAAGCACGAGCAAA   1033
                     |.|.||||||||||||||.||.||.|||||.||.||||...|.||.||||
BPUM_2462___l    984 TGTAGAATGGGTCATTCATTCAAGCCAGCTGACACCAAGATATGAACAAA   1033

BSNT_04099___   1034 AA--ATCGGTGTTGAA---CCACAGGTTGGCATTGTAAATGGGCTTGCAG   1078
                     ||  |.||     |||   |||.|.||.||..|.||.|||||.||.||.|
BPUM_2462___l   1034 AAGTACCG-----GAAAAGCCAAAAGTGGGGGTCGTCAATGGACTGGCTG   1078

BSNT_04099___   1079 TCTATGGGCCTAACAGCGGATCGCTTCTGGAAATCGAAGTGA----GTGT   1124
                     |.|||||.||.||||||||..|.||.||.||.||.|||||||    .|||
BPUM_2462___l   1079 TTTATGGACCAAACAGCGGTGCCCTGCTTGAGATTGAAGTGAATATCTGT   1128

BSNT_04099___   1125 AACCGCGGCTCAAGATAAAGGATCA--ATTAACATCACAGGAATAGCTGA   1172
                     ||    |||.|..||.|||||  ||  ||||||||.|||||.||.||.||
BPUM_2462___l   1129 AA----GGCACTTGAGAAAGG--CAGTATTAACATTACAGGCATTGCAGA   1172

BSNT_04099___   1173 AGAAGAAAGCATCGGCAGCCAATCAAAATCAATCAGACGAAAAAGCATGG   1222
                     ||||||||||||.||||..||.||||||||.||..|.||||||||.||||
BPUM_2462___l   1173 AGAAGAAAGCATTGGCAATCAGTCAAAATCTATTCGGCGAAAAAGTATGG   1222

BSNT_04099___   1223 CGAAGGGTTCGGTTGAAAATGTATTAACCGTGCTCCGGACAATGGGAATG   1272
                     ||||.||.||.|||||||||||||||||.|||||.||.|       |.|.
BPUM_2462___l   1223 CGAAAGGGTCAGTTGAAAATGTATTAACGGTGCTTCGAA-------ATTT   1265

BSNT_04099___   1273 AAGCCTTC-------TGATTATGATATTCACATCAATTTCCCAGGAGGGA   1315
                     |.||.|||       |||.|||||.||.||.||.|||||.|||||.||..
BPUM_2462___l   1266 AGGCATTCGGACAAATGAATATGACATCCATATTAATTTTCCAGGCGGTG   1315

BSNT_04099___   1316 TTCCGATTGATGGGCCGTCAGCAGGCATTGCGATGGCGGCGGGGATTTTC   1365
                     ..||.||||||||.|||||.||.||.|||||.||||||.|.|..||.|||
BPUM_2462___l   1316 CCCCAATTGATGGACCGTCTGCTGGGATTGCCATGGCGACCGCAATCTTC   1365

BSNT_04099___   1366 TCGGCGATACACAAAATTCCTATTGACAAT---ACCGTTGCGATGACGGG   1412
                     ||.||.|||||..|||||||.|||||..||   ||   .||.||||||||
BPUM_2462___l   1366 TCAGCCATACATCAAATTCCGATTGATCATCTGAC---AGCCATGACGGG   1412

BSNT_04099___   1413 CGAAATCAGCCTGAATGGTCTTGTGAAACCCATTGGAGGCGTCATTCCGA   1462
                     .||||||.|..||.|.||||..|||||.||.||.||.||.||.||.||.|
BPUM_2462___l   1413 TGAAATCGGATTGCAGGGTCAGGTGAAGCCAATCGGTGGTGTGATACCAA   1462

BSNT_04099___   1463 AAATAAAAGCGGCCAAGCAGTCCGGGGCGAAAAAGGTGATTATCCCATAT   1512
                     |.||.||.||.||.||||||.|.||.||.|.||..||.|||||.||.|||
BPUM_2462___l   1463 AGATTAAGGCAGCGAAGCAGGCTGGTGCCACAACCGTCATTATTCCTTAT   1512

BSNT_04099___   1513 GAAAATCAGCAGGCCATCTTAAAGCAGATTGACGGGATCGAGATTATTGC   1562
                     ||.|||||||||.|.|||||||||.|||||||.|||.||...|||.|..|
BPUM_2462___l   1513 GACAATCAGCAGTCGATCTTAAAGGAGATTGAAGGGGTCACCATTGTGCC   1562

BSNT_04099___   1563 AGTGAAG-ACGTTCCAAGAAGTGCTTGATGAAATTTTGGTGAATCCGCCA   1611
                     .|||||| || ||||||||.|||||.|||.|...|.||||.||.||||||
BPUM_2462___l   1563 TGTGAAGCAC-TTCCAAGAGGTGCTGGATCAGTGTCTGGTCAACCCGCCA   1611

BSNT_04099___   1612 -ACG-GAACAAAAACCGTTTCATA--TCGAAATCAATAAAGAATCTGTTT   1657
                      ||| |||.|||.|..|..| |.|  .||||||.||.|.|.|||||||||
BPUM_2462___l   1612 GACGAGAAGAAAGATGGACT-AGAAGACGAAATGAAAAGAAAATCTGTTT   1660

BSNT_04099___   1658 AA   1659
                     ||
BPUM_2462___l   1661 AA   1662


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