Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04101 and BPUM_2463

See Amino acid alignment / Visit BSNT_04101 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:37
# Commandline: needle
#    -asequence dna-align/BSNT_04101___clpX.1.24716.seq
#    -bsequence dna-align/BPUM_2463___clpX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04101___clpX-BPUM_2463___clpX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04101___clpX-BPUM_2463___clpX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04101___clpX
# 2: BPUM_2463___clpX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1271
# Identity:    1038/1271 (81.7%)
# Similarity:  1038/1271 (81.7%)
# Gaps:          13/1271 ( 1.0%)
# Score: 4218.0
# 
#
#=======================================

BSNT_04101___      1 ATGTTTAAATTTAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGTGG     50
                     |||||||||||.||||||||||||||.|||||||||||||||||.||.||
BPUM_2463___c      1 ATGTTTAAATTCAACGAGGAAAAAGGTCAATTAAAATGCTCGTTTTGCGG     50

BSNT_04101___     51 AAAAACACAAGATCAGGTTCGTAAGCTTGTAGCTGGACCTGGTGTATATA    100
                     ||||||.||||||||.||.|||||.||.||.||.||||||||.|||||||
BPUM_2463___c     51 AAAAACGCAAGATCAAGTGCGTAAACTGGTCGCAGGACCTGGCGTATATA    100

BSNT_04101___    101 TATGTGACGAATGTATCGAACTCTGCACTGAAATTGTAGAGGAAGAACTC    150
                     |||||||.|||||||||||.||.|||||.|||||.||.||.|||||.|||
BPUM_2463___c    101 TATGTGATGAATGTATCGAGCTTTGCACGGAAATAGTTGAAGAAGAGCTC    150

BSNT_04101___    151 GGAACAGAAGAAGAAGTAGAATTTAAAGACGTACCAAAGCCTCAGGAAAT    200
                     ||.||.||.||||||||.|||||.||.||.||.||.||||||||.|||||
BPUM_2463___c    151 GGCACTGAGGAAGAAGTTGAATTCAAGGATGTTCCGAAGCCTCATGAAAT    200

BSNT_04101___    201 TCGCGAAATT-TTGAATGAATATGTCATCGGCCAAGATCAAGCGAAGAAA    249
                     |||.||.||| ||| ||||||||||||||||.|||||..|.|||||||||
BPUM_2463___c    201 TCGGGAGATTCTTG-ATGAATATGTCATCGGTCAAGAAAATGCGAAGAAA    249

BSNT_04101___    250 TCACTT-GCTGTTGCTGTGTATAACCACTATAAGCGCATTAACTCCAACA    298
                     || ||| |||||.||.||.|||||.||||||||.||.||.||.||.||||
BPUM_2463___c    250 TC-CTTAGCTGTAGCGGTTTATAATCACTATAAACGGATCAATTCAAACA    298

BSNT_04101___    299 GCAAAGTTGATGATGTTGAGCTTTCAAAAAGTAATATTTCATTAATCGGC    348
                     ||||..|||||||||||||||||||.|||||||||||.||..|.||.||.
BPUM_2463___c    299 GCAAGATTGATGATGTTGAGCTTTCGAAAAGTAATATCTCTATGATTGGG    348

BSNT_04101___    349 CCTACGGGAAGCGGTAAAACCCTTCTGGCGCAAACATTGGCTCGCATTTT    398
                     ||.||.||||||||||||||..|.||.||.|||||..|.|||||.|||||
BPUM_2463___c    349 CCAACAGGAAGCGGTAAAACATTACTTGCTCAAACGCTTGCTCGTATTTT    398

BSNT_04101___    399 AAATGTGCCGTTTGCGATTGCGGACGCTACATCTTTGACTGAAGCTGGAT    448
                     |||||||||.|||||||||||.||.||.|||||..|.||||||||.||.|
BPUM_2463___c    399 AAATGTGCCATTTGCGATTGCAGATGCAACATCACTAACTGAAGCAGGTT    448

BSNT_04101___    449 ACGTGGGTGAAGATGTAGAGAATATTCTCTTGAAGCTCATCCAAGCTGCT    498
                     |.||.||||||||.||||||||||||.|..|.|||||.||||||||.||.
BPUM_2463___c    449 ATGTTGGTGAAGACGTAGAGAATATTTTACTAAAGCTGATCCAAGCAGCC    498

BSNT_04101___    499 GATTATGATGTGGAAAAAGCCGAAAAAGGCATTATCTATATTGATGAAAT    548
                     |||||||||||.||||||||.|||||||||||||||||.||.||||||||
BPUM_2463___c    499 GATTATGATGTAGAAAAAGCGGAAAAAGGCATTATCTACATCGATGAAAT    548

BSNT_04101___    549 CGATAAAGTGGCTAGAAAATCTGAAAACCCGTCTATCACACGTGATGTGT    598
                     |||||||||.||.||||||||.||||||||.||||||||.||||||||.|
BPUM_2463___c    549 CGATAAAGTAGCAAGAAAATCAGAAAACCCTTCTATCACTCGTGATGTAT    598

BSNT_04101___    599 CAGGTGAGGGTGTACAGCAGGCATTGCTTAAAATTCTTGAGGGTACAGTG    648
                     |.||.||.|||||.|||||.|||.|..|.|||||||||||.||.||.||.
BPUM_2463___c    599 CTGGGGAAGGTGTTCAGCAAGCACTATTGAAAATTCTTGAAGGAACTGTC    648

BSNT_04101___    649 GCAAGCGTACCGCCTCAAGGTGGACGTAAGCATCCTCATCAAGAATTCAT    698
                     ||.||.||||||||||||||||||||||||||||||||||||||||||||
BPUM_2463___c    649 GCTAGTGTACCGCCTCAAGGTGGACGTAAGCATCCTCATCAAGAATTCAT    698

BSNT_04101___    699 TCAAATTGACACAACAAATATTTTGTTCATTTGCGGCGGAGCTTTCGATG    748
                     ||||||.||.||.||||||||..|.||.|||||.||.|||||.||.||.|
BPUM_2463___c    699 TCAAATCGATACTACAAATATCCTCTTTATTTGTGGTGGAGCCTTTGACG    748

BSNT_04101___    749 GTATCGAACAAATCATCAAACGCCGTTTAGGCCAAAAAGTGATTGGATTC    798
                     |.||.||.|||||||||||||||||..||||.||||||||.|||||||||
BPUM_2463___c    749 GCATTGAGCAAATCATCAAACGCCGCCTAGGTCAAAAAGTCATTGGATTC    798

BSNT_04101___    799 GGTGCCGACAATAAAGCTGCTGATCTTGAGAAAGAAGATCTTCTTTCAAA    848
                     |||||.||.||||||...|..||||||||.|||||||..|||||.|||||
BPUM_2463___c    799 GGTGCGGAAAATAAAATCGAAGATCTTGAAAAAGAAGTCCTTCTATCAAA    848

BSNT_04101___    849 AGTGCTTCCAGAAGATTTGCTCCGTTTCGGGTTAATTCCTGAATTTATCG    898
                     |||.||.||||||||.|||||.||||||||.|||||.||.|||||.||||
BPUM_2463___c    849 AGTACTCCCAGAAGACTTGCTTCGTTTCGGTTTAATCCCAGAATTCATCG    898

BSNT_04101___    899 GACGTCTT-CCGGTTATTGCAAGCCTTGAAAAGCTTGACGAAGAAGCATT    947
                     |.|| ||| |||||||||||||||||.||...|.|.||.|||.|||||.|
BPUM_2463___c    899 GCCG-CTTGCCGGTTATTGCAAGCCTAGAGCCGTTAGATGAAAAAGCACT    947

BSNT_04101___    948 GGTTGCGATCTTAACAAAACCGAAAAACGCTCTTGTTAAGCA--ATTCAA    995
                     .||.|.||||||.||.||.||.|||||.||.||.||||||||  ||.|| 
BPUM_2463___c    948 TGTAGAGATCTTGACGAAGCCTAAAAATGCACTCGTTAAGCAGTATACA-    996

BSNT_04101___    996 GAAAATGCTTGAGCTTGACAACGTTGAGCTTGAGTTTGAAGAAGAAGCGC   1045
                      |||||||||||||||||..|.||.|||||.||.|||||||||||.||.|
BPUM_2463___c    997 -AAAATGCTTGAGCTTGATGATGTAGAGCTAGAATTTGAAGAAGATGCTC   1045

BSNT_04101___   1046 TTTCTGAAATTGCTAAAAAAGCAATTGAACGCAAGACTGGAGCACGCGGA   1095
                     ||...||||||||.||||||||||||||.||.||.||.|||||.||.||.
BPUM_2463___c   1046 TTAGCGAAATTGCGAAAAAAGCAATTGAGCGTAAAACAGGAGCTCGTGGT   1095

BSNT_04101___   1096 CTCCGTTCTATCATTGAAGGCATCATGCTTGATGTGATGTTTGAGCTGCC   1145
                     ||.|||||.|||||||||||||||||||||||||||||||||||.||.||
BPUM_2463___c   1096 CTTCGTTCAATCATTGAAGGCATCATGCTTGATGTGATGTTTGACCTTCC   1145

BSNT_04101___   1146 TTCTCGTGATGACATTGAAAAATGTGTAATCACCGGGGCAACTGTGACAC   1195
                     .||.|||||.||.||||||||||||||.|||||.||.|||||.||..|..
BPUM_2463___c   1146 ATCACGTGACGATATTGAAAAATGTGTCATCACTGGTGCAACGGTTGCTG   1195

BSNT_04101___   1196 ACGGAGAGCCTCCTCGCCTCTTATTAAAAGACGGCACTGAGGTAAGCCAA   1245
                     |.||.|||.|.||.||.||..|.|||||.||||||||.|..||.|...||
BPUM_2463___c   1196 ATGGCGAGTCGCCGCGTCTTGTGTTAAAGGACGGCACAGTCGTCAATAAA   1245

BSNT_04101___   1246 GAT---AAAACATCTGCATAA   1263
                     |||   |||||||||||||||
BPUM_2463___c   1246 GATACGAAAACATCTGCATAA   1266


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