Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04112 and BPUM_2472

See Amino acid alignment / Visit BSNT_04112 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_04112___ilvB.1.24716.seq
#    -bsequence dna-align/BPUM_2472___ilvB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04112___ilvB-BPUM_2472___ilvB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04112___ilvB-BPUM_2472___ilvB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04112___ilvB
# 2: BPUM_2472___ilvB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1748
# Identity:    1330/1748 (76.1%)
# Similarity:  1330/1748 (76.1%)
# Gaps:          46/1748 ( 2.6%)
# Score: 4987.0
# 
#
#=======================================

BSNT_04112___      1 ATGAGGACTAATGTACAGGTGGATTC---AGCATCTGCCAAATGTA-CAC     46
                     |||.||||.||||||||.|||||..|   |.|||||    ||.|.| |||
BPUM_2472___i      1 ATGGGGACAAATGTACAAGTGGAGACGGAAACATCT----AAAGCACCAC     46

BSNT_04112___     47 AGACGATGAGCGGAGCATTAATGCTGATTGAATCATTAAAAAAAGAGAAA     96
                     |.|||||||.|||.|||.|.|||.|.||||||.||.|.||||.|||.|||
BPUM_2472___i     47 AAACGATGAACGGTGCACTCATGTTAATTGAAGCACTTAAAAGAGAAAAA     96

BSNT_04112___     97 GTAGAAATGATTTTCGGTTATCCGGGCGGGGCTGTGCTTCCGATTTACGA    146
                     ||||||.|.||||||||.|||||.|||||.||.||..|.|||||.|||||
BPUM_2472___i     97 GTAGAAGTCATTTTCGGATATCCAGGCGGAGCGGTTTTACCGATCTACGA    146

BSNT_04112___    147 TAAGCTATACAATTCAGGGTTGGTACATATCCTTCCCCGTCACGAACAAG    196
                     |||..|.||..||||.|||||..|.|||.||||.||..|.||.|||||||
BPUM_2472___i    147 TAAAATTTATGATTCTGGGTTATTCCATGTCCTGCCAAGACATGAACAAG    196

BSNT_04112___    197 GAGCAATTCATGCAGCGGAGGGATACGCAAGGGTCTCCGGAAAACCGGGT    246
                     ||||.||||||||.||.||.|||||||||||.||.||.||.|||||.|||
BPUM_2472___i    197 GAGCGATTCATGCGGCAGAAGGATACGCAAGAGTATCTGGCAAACCAGGT    246

BSNT_04112___    247 GTCGTCATTGCCACGTCAGGGCCGGGAGCGACAAACCTTGTTACAGGCCT    296
                     ||.||||||||.||.|||||.||.|||||.||||||||.||.|||||..|
BPUM_2472___i    247 GTTGTCATTGCAACATCAGGACCTGGAGCAACAAACCTAGTCACAGGAAT    296

BSNT_04112___    297 TGCTGATGCCATGATTGATTCATTGCCGTTAGTTGTCTTTACAGGGCAGG    346
                     |||.|||||.||||||||||||.|.||..|.||||||||.|||||.||||
BPUM_2472___i    297 TGCAGATGCAATGATTGATTCACTTCCTCTTGTTGTCTTCACAGGACAGG    346

BSNT_04112___    347 TAGCAACCTCTGTAATCGGGAGC-GATGCATTTCAGGAAGCAGACATTTT    395
                     |.||||||||.||.|| .|||.| ||.||.||.||||||||||||.|..|
BPUM_2472___i    347 TGGCAACCTCAGTCAT-TGGATCAGACGCTTTCCAGGAAGCAGACGTGCT    395

BSNT_04112___    396 AGGGATTACGATGCCAGTAACAAAACACAGCTACCAGGTTCGCCAGCCGG    445
                     .||.||.||.|||||..|.||||||||||||||||||||..|..|.||.|
BPUM_2472___i    396 CGGCATCACAATGCCTATCACAAAACACAGCTACCAGGTGAGAAATCCAG    445

BSNT_04112___    446 AAGATCTGCCGCGCATCATTAAAGAAGCGTTCCATATTGCAACAACTGGA    495
                     |.||..|.||..||.|||||||||||||||||||.||.|||||.||.|||
BPUM_2472___i    446 AGGAATTACCTGGCGTCATTAAAGAAGCGTTCCACATCGCAACGACAGGA    495

BSNT_04112___    496 AGACCCGGACCTGTATTGATTGATATTCCGAAAGATGTAGCAACAATTGA    545
                     |||||.||.||.||.||||||||||||||.||||||||.|||...|||||
BPUM_2472___i    496 AGACCTGGGCCAGTCTTGATTGATATTCCAAAAGATGTGGCAGGCATTGA    545

BSNT_04112___    546 AGGA------GAATTCAGCTACGATCATGAGATGAATCTCCCGGGATACC    589
                     ||||      |||      ||||||||....||..||.|.||.||.||.|
BPUM_2472___i    546 AGGAACGTTTGAA------TACGATCAGCCAATTGATTTACCAGGTTATC    589

BSNT_04112___    590 AGCCGACAACAGAGCCGAATTATTTGCAGATCCGCAAGCTTGTGGAAGCC    639
                     ||||.|.|..|||||||||.||||||||.||.||.||..|.||.|||||.
BPUM_2472___i    590 AGCCAAAAGTAGAGCCGAACTATTTGCAAATTCGTAAATTAGTAGAAGCT    639

BSNT_04112___    640 GTGAGCAGTGCGAAAAAACCGGTGATCCTGGCGGGTGCGGGCGTATTGCA    689
                     ||.|||||.|||||.|||||.||.||.||.||.||.||.|||||..|.||
BPUM_2472___i    640 GTCAGCAGAGCGAAGAAACCAGTCATTCTAGCAGGAGCTGGCGTTCTTCA    689

BSNT_04112___    690 TGGAAAAGCGTCAGAAGAATTAAAAAATTATGCTGAACAGCAGCAAATCC    739
                     |||.|||||.||.||||||||||...|.||||..||.||.||||||||||
BPUM_2472___i    690 TGGCAAAGCATCTGAAGAATTAAGGCAGTATGTAGAGCAACAGCAAATCC    739

BSNT_04112___    740 CTGTGGCACACACCCTTTTGGGGCTCGGAGGCTTCCCGGCTGACCATCCG    789
                     |.||.||.||.||.||..|.||.||.||.|||||||||||..|.||.||.
BPUM_2472___i    740 CAGTCGCTCATACACTGCTAGGACTTGGCGGCTTCCCGGCAAAGCACCCT    789

BSNT_04112___    790 CTTTTCCTAGGGATGGCGGGAATGCACGGTACTTATACAGCCAATATGGC    839
                     |||||||||||||||||.||.|||||.||.||.||..|.||.||.|||||
BPUM_2472___i    790 CTTTTCCTAGGGATGGCTGGTATGCATGGCACATACGCGGCAAACATGGC    839

BSNT_04112___    840 TCTTCATGAATGTGATCT----ATTAATCAGTATCGGCGCCCGTTTTGAT    885
                     .||||||.||||.|||||    |||  |||  |||||.||..|.||.|||
BPUM_2472___i    840 ACTTCATCAATGCGATCTGCTCATT--TCA--ATCGGTGCGAGATTCGAT    885

BSNT_04112___    886 GACCGTGTCACAGGAAACCTGAAACACTTTGCCAGAAAC--GCAAAGATA    933
                     ||..|.||.||.||.||.||.||.||||||||  |||||  ||.|||.|.
BPUM_2472___i    886 GATAGGGTAACTGGCAATCTCAATCACTTTGC--GAAACATGCGAAGGTG    933

BSNT_04112___    934 GCCCACATCGATATTGATCCAGCTGAAATCGGAAAAATCATGAAAACACA    983
                     ||.|||||.|||||.||.|||||.|||||.||.||.|.|||..|.||.||
BPUM_2472___i    934 GCACACATTGATATCGACCCAGCAGAAATTGGCAAGAACATTCATACGCA    983

BSNT_04112___    984 GATTCCTGTAGTCGGAGACAGCAAAATTGTCCTGCAGGAGCTGATCAAAC   1033
                     .||.||.||.||.||||||||.||..|.|||||.||.||||||||.||.|
BPUM_2472___i    984 TATCCCGGTTGTTGGAGACAGTAAGCTAGTCCTTCAAGAGCTGATTAAGC   1033

BSNT_04112___   1034 AAGACGGCAAACAAAGCGATTCAAGCGAATGGAAAAAACAGCTCGCCGAA   1083
                     |||||||.||.|||.|.||.|||..||||||||||||.||.||.|...|.
BPUM_2472___i   1034 AAGACGGGAAGCAAGGAGAGTCAGACGAATGGAAAAACCAACTAGATCAG   1083

BSNT_04112___   1084 TGGAAAGAAGAGTATCCGCTCTGGTATGTAGATAATGAAGAAGAAGGTTT   1133
                     |||||.|||||.|||||.|||||||||||.||.|||||||.|||.||.||
BPUM_2472___i   1084 TGGAAGGAAGAATATCCACTCTGGTATGTTGAAAATGAAGCAGAGGGCTT   1133

BSNT_04112___   1134 TAAACCTCAGAAATTGATTGAATATATTCATCAATTTACAAAAGGAGAGG   1183
                     ||||||.||.||..||||||||||.|||||||||||.||||||||.||.|
BPUM_2472___i   1134 TAAACCGCAAAAGCTGATTGAATACATTCATCAATTCACAAAAGGTGAAG   1183

BSNT_04112___   1184 CCATTGTCGCAACAGATGTAGGCCAGCATCAAATGTGGTCAGCGCAATTT   1233
                     |||||||.|||||.|||||.||.|||||||||||||||.||||.|||||.
BPUM_2472___i   1184 CCATTGTGGCAACGGATGTTGGACAGCATCAAATGTGGGCAGCTCAATTC   1233

BSNT_04112___   1234 TATCCGTTCCAAAAAGCAGATAAATGGGTCACGTCAGGCGGACTTGGAAC   1283
                     |||||.||..||||.|||||||||||||||||.||.|||||.|||||.||
BPUM_2472___i   1234 TATCCATTTGAAAATGCAGATAAATGGGTCACATCTGGCGGCCTTGGTAC   1283

BSNT_04112___   1284 GATGGGATTCGGTCTTCCGGCGGCGATCGGCGCACAGCTGGCCGAAAAAG   1333
                     ||||||.||||||.|.||.||.||.||.|||||.|||.|.||.||..|||
BPUM_2472___i   1284 GATGGGCTTCGGTTTACCAGCAGCCATTGGCGCTCAGTTAGCTGATCAAG   1333

BSNT_04112___   1334 ATGCTACTGTTGTCGCGGTTGTCGGAGACGGCGGATTCCAAATGACGCTT   1383
                     |.||.||.|||||.|||.||.|.||||||||.||.|||||||||||.||.
BPUM_2472___i   1334 AGGCAACGGTTGTGGCGATTTTAGGAGACGGAGGTTTCCAAATGACCCTG   1383

BSNT_04112___   1384 CAAGAACTCGATGTTATTCGCGAATTAAATCTTCCGGTCAAGGTAGTGA-   1432
                     ||||||||.|..|||||.||.||..|.||.|||||.||.||   ||||| 
BPUM_2472___i   1384 CAAGAACTTGCCGTTATCCGTGAGCTGAACCTTCCAGTGAA---AGTGAT   1430

BSNT_04112___   1433 --TTTTAAATAACGCTTGTCTCGGAATGGTCAGACAGTGGCAGGAAATTT   1480
                       ||.|.|||||...|.|.||.||||||||.|||||.|||||.|||||||
BPUM_2472___i   1431 TGTTCTCAATAATCATAGCCTTGGAATGGTAAGACAATGGCAAGAAATTT   1480

BSNT_04112___   1481 TCTATGAAGAACGTTATTCAGAATCTAAATTCGCTTC---TCAGCCTGAC   1527
                     ||||.||||||||.||.|||.|.||||||||   |||   .|||||.|||
BPUM_2472___i   1481 TCTACGAAGAACGCTACTCATATTCTAAATT---TTCAGAGCAGCCGGAC   1527

BSNT_04112___   1528 TTCGTCAAATTGTCCGAAGCATACGGCATTAAAGGCATCAGAATTTCATC   1577
                     |||||.|||||.||.|||||.||.|||||||||||.||||||||.|||||
BPUM_2472___i   1528 TTCGTTAAATTATCTGAAGCTTATGGCATTAAAGGAATCAGAATCTCATC   1577

BSNT_04112___   1578 AGAAGCGGAAGCAAAGGTAAAGCTGGAAGAGGCATTAACATCAAGAGAAC   1627
                     |||.|..||.||.||.|.||||||.|||||.||..||||.||.|||||.|
BPUM_2472___i   1578 AGACGAAGAGGCGAAAGAAAAGCTTGAAGAAGCGCTAACCTCTAGAGAGC   1627

BSNT_04112___   1628 CTGTTGTCATTGACGTGCGGGTTGCCAGCGAAGAAAAAGTATTCCCGATG   1677
                     |||||.||||.||.||....||.||.||.||.||||||||||||||||||
BPUM_2472___i   1628 CTGTTTTCATCGATGTCAATGTAGCGAGAGATGAAAAAGTATTCCCGATG   1677

BSNT_04112___   1678 GTGGCTCCGGGGAAAGGGCTGCATGAAATGGTGGGGGTGAAACCTTGA   1725
                     ||.||.|||||||||||.||.|||||.|||||||||||||||||||||
BPUM_2472___i   1678 GTAGCACCGGGGAAAGGACTTCATGAGATGGTGGGGGTGAAACCTTGA   1725


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